CmaCh06G012710 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G012710
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	GDT1 family protein
Location	Cma_Chr06: 8469631 .. 8474191 (+)
RNA-Seq Expression	CmaCh06G012710
Synteny	CmaCh06G012710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCAGGCACTGGTCCAAAACGACGCCGGAGGATTCATATTTTTTTCAACACCAAGTTTTACAAATTCGAGACGAGCTTTCCATTTTATCTCTGCAACTGCGACGTGGCAATCTTCGGAACTCAGATACGGATTTGTTGGCGGAGATTCAACTTCACTTCCGAGCAACTTTACGCTTGAACCGCCGGCGGCCGGCGAGAATTATGGTTTTGTAGTAGGTAGATATGAGGTCATAGGAACGAAAAGGAAGGAGAAATGGAAGGATTGGTGGTTCGGTCACCTTTCGTTTCAACAGGGAAGAAGTTTCCTTTCTCACCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCAGTGTATTTGCGAAGACCGTATCGAAATCGCGTAACCTTCTCTTGAATTATCTCTCTTTCCTTATAATTTTCAGTTTTGGTTTTGATTTTGCATATTTCCAAACGCTCAGTGTTTGCATTATAAGTAGATTAGTTACTCATTGTTTGGTGAAACTGATTGTTTGAGAGTTTCTTTGAGTAATTTATGGACGATTCTCGTTTTGACTGTCTTAATTTTGTTGTGATTGTTTGAGAGTTTCTTTGAGTAATTTATGGACGATTCTCGTTTTGACTGTCTTAATTTTGTTGAATGCTATGCGTTTTCCGTGCATTCTGTGAACATATTGAGCGAGCAGTGAGTGTGTTGTTGACAGTGAAATGTAGAAGAGTAACGAGATTGAACACGAAGTATTGAGCGAGCAGTGAGTGTGTTGTTGACAGTGAAATGTAGAAGAGTAACGAGATTGAACACGAAGTACGGTAAAATCAGAGCGCATTCGTCGAATGTAAGTATCGGATCCGATGGATACAAGCACGAGGAGGAAAAGGAGGGCCAGCATGTTATTTCCAGCAGTGCACCTGCTGATAGTTCATCTAAAACGTGAGGAGGAAAAGGAGGGCCAGCATGTTATTTCCAGCAGTGCACCTGCTGATAGTTCATCTAAAACGTGAGTTTCGTCATTTTTGTTTTGATTTTTCTGAGTTGTTGATATATTAAAATTTTGATTTCTGTGACTATGGCTTGGATTATGCACCATATGCATTTATTTCAGAACTCCAATTGATCTTCCGGAGCAATGGTTTATGGCTTGGATTATGCACCATATGCATTTATTTCAGAACTCCAATTGATCTTCCGGAGCAATGGTTATAAAATCGAAGGTTTCGTTGAAGGATTTTTTATTCTTATTATCATTTGAAATCAAAATTCTACTAATCTGGTTGNTTCCTCTAATCCATTCGATATTTGAAGGGCTGTGATAATGTGTTGTATTATTAAGAGGCAGTCAAATTGTAGCAACCTGGCTGAATAAGTTTTTAAGCTAATCGAGTAAATGACAACCTTATTTGTTGTGTAAAATGATGCTCTCACCTTGCTTTATAATTTAGTGAATCGAGTAAATGACAACCTTATTTGTTGTGTAAAATGATGCTCTCACCTTGCTTTATAATTTAGTGAATCCGGGACACATTTTTCTCTCATATGAACCTACATCACTTCTTCTTCACTCATTTATATATCTTATATTGTTTTGGCAGTGAGAAGTCTCCAAATGGATTGCCTTATCCTCTTTCTATTGCGCTAGTACTAATTGGGTGCAGTTTAGTATTCTCACTGATTGCCTTTGTGAAAGGAGGACCATCGTCAATCTTGGCCGCAGTCGCTAAGTCAGGGTTCACTGCTGCTTTCTCCTTAATATTTGTCTCTGAAATTGGAGACAAGGTGACTTTTTACATTCTTGGAACTTTGCCTTTATCAAGGTTCTCAATTCTCTGAAATTGGAGACAAGGTGACTTTTTACATTCTTGGAACTTTGCCTTTATCAAGGTTCTCAATTTTTTCCTATTGCTAGAAGGATTGTGCATAAACACACAATCCATAGAATAAATTACAGATGAATAAAAGAAAACAATTCAAAAGACTAAGATATGAGTTCAATCCACTGAGACTGGAAGTTTGAAGCTCGACCTTGTTACATTAAATTTCAAAGAATTAAGCGAAGTAACCAAAATATTCTAAATTTTCCAAATGTTTACTGTTATCATTAAATTTCAAAGAATTAAGCGAAGTAACCAAAATATTCTAAATTTTCCAAATGTTTACTGTTATATGGCTCTACTTCTTTCTAGCATCTTTAGTGTCACATCCCCTTAGAACTTTGAAGATATTGTCAGCTTATACCTTATCTCTTTTGGACAGACATTTTTCATTGCTGCACTCTTGGCCATGCAATATAAGAAAGGACTGGTATATCCTCTGTCGCCAGACATTTTTCATTGCTGCACTCTTGGCCATGCAATATAAGAAAGGACTGGTATATCCTCTGTCGCCCTCTCTCTGTCTACAAAAATGCATCTGCTATTTGCACCATGTTTTTCTTTTCCTTTGTTCCATATGGCTTGATTCTGTGGGTTAGGAATTGAAAGTGCTATTCAGGTATTGAATTGTTGAGCAGGTTCTGTTAGGATCTATGGGAGCTTTAGGAATTGAAAGTGCTATTCAGGTATTGAATTGTTGAGCAGGTTCTGTTAGGATCTATGGGAGCTCTTTCACTTATGACAGTCCTCTCAGTTATAATTGGACGGATATTTCACTCAGTACCTGCTCAGTTCCAGACAAGTAAGCTCAACTGCTCTAGAATAATCTCTTTTAACGTACTGCCTTCTTACTTCTTTCTCTGTTAGGACAATAACTTTGGCCCGTCTTCCTTATATTGTACTAGATACGATTCTGCTGAGACGATCGACATTTATTGTTGAAACCAGTGCATTTTGTTCTATTAAAAATTCAATTCTATATTTGATATTTTCTATCGTAACAAATAATACTTCTCCTACGCATACTCTTAGGTCCAAAATCTTAACTATATTTACGTGCTGTCGTTTGTGTAGCTTTACCAATTGGAGAATATGCGGCTGTAACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGAACTTCCCTCGAGTGTTCCTAAACAGGACAACGAGAGTCCTCCAGAACTTGATGAATATGTTGAAGCAGAGGAGCTTGTTAAAGAAAAGGTGGATCCCCAATCATTAGTTTCCTCTAGATTTTGAATTTTGTTTTGTTAAGGCTTGGAAACTGTTGCTTCTGGGTAGTCTATTTCATATTTGTCTGACTTTGTGACTAAAATTCCTGATTCTACCATATGGTATATCTTTTATAATTGTTTTCAGGTTTCAAAACGGCTCTCCAATCCTCTTGAAATCATCTGGAAGTCGTTCAGCCTTATATTTTTTGCTGTGAGTAGCTTTTAATCATTACTATTTCAGCAGAAAAGTATAACAAAAGCATAATATTTTAGATCGAGTCCACAGCTTTTAATCATTACTATTTCAGCAGAAAAGTATAACAAAAGCATAATATTTTAGATCGAGTCCACGTGTAAAAATTCATTATAGGAGGATATTTCGTTCGGCCCTTTTAGATCATCAAAAAGGGTATTGTAAACATATATATACACCTTCCCTCTATCACCTTTGCGCATCATATTTTGTAACTTAGACGTGAATGGATATCATATTTAGTTCATCGACTTAGGGACAGTCCCATGGGGCATTTTTAAAGCTCTTTATGATTTTCCCAGAGTATGTGTTTACATTTTAAAATTTTTGTATGTGCAAATACTTAAGTTTGAAACATTTTGTTAATGTTAGGAATGGGGTGATCGCTCAATGCTTGCAACCATTGCTCTTGGAGCTGCACAGGTTCGATTTTCTTTATTTAGAAGCCTGCAATATACTTCATTTGGTTCTCTCTCGTTTCATTTCAAACTTGCGTTTTTCTTTCAATTTCCACTCCACAGTCTCCTTGGGGCGTGGCTACGGGAGCTATCACTGGACACCTAATTGCAACCACCATTGCCACCACAGTCTCCTTGGGGCGTGGCTACGGGAGCTATCACTGGACACCTAATTGCAACCACCATTGCCATTCTAGGAGGAGCACTTCTTGCAAATTACATTTCTGAAAAACTGGTAGGAGCCTAACTCCTCTCACATATAATATGCCGTTTGATTCCTTCATCATTGATGCAACAACTCACTCGACCTTCAATCAGGTCGGCTATGTGGGCGGTGTACTCTTCTTGATTTTTGCAGTAGCAACCTTTTTCGGAGTTTTCTGACTATTGCACGACATCGAGTTCACTCTTCTTGATTTTTGCAGTAGCAACCTTTTTCGGAGTTTTCTGACTATTGCACGACATCGAGTTCTTCAACGCCCTATGGTCAGGTCAATGCATTCAAAGGCTCTAATGCTAGTAGCCACAGTGAGAAGAGGAAGAAAAGTGGCTTAACGTAGGTTATTGTTTCTTTTCTTTCTGATGTTTATGATATAATCCTTTTCATTATTCTCAAGCTTCATAATTATGATTTCGTGTGCTTGTCGTGAACAATTTTCTTTCCCCATATGGTTCGTAGTGGAATTCAGATTTTTGCCAATAAAATTTCATTTTCTGTTATATTGAT

mRNA sequence

ATGGGCCAGGCACTGGTCCAAAACGACGCCGGAGGATTCATATTTTTTTCAACACCAAGTTTTACAAATTCGAGACGAGCTTTCCATTTTATCTCTGCAACTGCGACGTGGCAATCTTCGGAACTCAGATACGGATTTGTTGGCGGAGATTCAACTTCACTTCCGAGCAACTTTACGCTTGAACCGCCGGCGGCCGGCGAGAATTATGGTTTTGTAGTAGGGAAGAAGTTTCCTTTCTCACCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCAGTGTATTTGCGAAGACCGTATCGAAATCGCTGAAATGTAGAAGAGTAACGAGATTGAACACGAAGTACGGTAAAATCAGAGCGCATTCGTCGAATGTAAGTATCGGATCCGATGGATACAAGCACGAGGAGGAAAAGGAGGGCCAGCATGTTATTTCCAGCAGTGCACCTGCTGATAGTTCATCTAAAACTGAGAAGTCTCCAAATGGATTGCCTTATCCTCTTTCTATTGCGCTAGTACTAATTGGGTGCAGTTTAGTATTCTCACTGATTGCCTTTGTGAAAGGAGGACCATCGTCAATCTTGGCCGCAGTCGCTAAGTCAGGGTTCACTGCTGCTTTCTCCTTAATATTTGTCTCTGAAATTGGAGACAAGACATTTTTCATTGCTGCACTCTTGGCCATGCAATATAAGAAAGGACTGGTTCTGTTAGGATCTATGGGAGCTCTTTCACTTATGACAGTCCTCTCAGTTATAATTGGACGGATATTTCACTCAGTACCTGCTCAGTTCCAGACAACTTTACCAATTGGAGAATATGCGGCTGTAACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGAACTTCCCTCGAGTGTTCCTAAACAGGACAACGAGAGTCCTCCAGAACTTGATGAATATGTTGAAGCAGAGGAGCTTGTTAAAGAAAAGGTTTCAAAACGGCTCTCCAATCCTCTTGAAATCATCTGGAAGTCGTTCAGCCTTATATTTTTTGCTGAATGGGGTGATCGCTCAATGCTTGCAACCATTGCTCTTGGAGCTGCACAGTCTCCTTGGGGCGTGGCTACGGGAGCTATCACTGGACACCTAATTGCAACCACCATTGCCATTCTAGGAGGAGCACTTCTTGCAAATTACATTTCTGAAAAACTGGTCGGCTATGTGGGCGGTGTACTCTTCTTGATTTTTGCAGTAGCAACCTTTTTCGGAGTTTTCTGACTATTGCACGACATCGAGTTCTTCAACGCCCTATGGTCAGGTCAATGCATTCAAAGGCTCTAATGCTAGTAGCCACAGTGAGAAGAGGAAGAAAAGTGGCTTAACGTAGGTTATTGTTTCTTTTCTTTCTGATGTTTATGATATAATCCTTTTCATTATTCTCAAGCTTCATAATTATGATTTCGTGTGCTTGTCGTGAACAATTTTCTTTCCCCATATGGTTCGTAGTGGAATTCAGATTTTTGCCAATAAAATTTCATTTTCTGTTATATTGAT

Coding sequence (CDS)

ATGGGCCAGGCACTGGTCCAAAACGACGCCGGAGGATTCATATTTTTTTCAACACCAAGTTTTACAAATTCGAGACGAGCTTTCCATTTTATCTCTGCAACTGCGACGTGGCAATCTTCGGAACTCAGATACGGATTTGTTGGCGGAGATTCAACTTCACTTCCGAGCAACTTTACGCTTGAACCGCCGGCGGCCGGCGAGAATTATGGTTTTGTAGTAGGGAAGAAGTTTCCTTTCTCACCTTTGCTCGATTCTTTGCCGAGTTGTTCTGCTTCTGGCAGTGTATTTGCGAAGACCGTATCGAAATCGCTGAAATGTAGAAGAGTAACGAGATTGAACACGAAGTACGGTAAAATCAGAGCGCATTCGTCGAATGTAAGTATCGGATCCGATGGATACAAGCACGAGGAGGAAAAGGAGGGCCAGCATGTTATTTCCAGCAGTGCACCTGCTGATAGTTCATCTAAAACTGAGAAGTCTCCAAATGGATTGCCTTATCCTCTTTCTATTGCGCTAGTACTAATTGGGTGCAGTTTAGTATTCTCACTGATTGCCTTTGTGAAAGGAGGACCATCGTCAATCTTGGCCGCAGTCGCTAAGTCAGGGTTCACTGCTGCTTTCTCCTTAATATTTGTCTCTGAAATTGGAGACAAGACATTTTTCATTGCTGCACTCTTGGCCATGCAATATAAGAAAGGACTGGTTCTGTTAGGATCTATGGGAGCTCTTTCACTTATGACAGTCCTCTCAGTTATAATTGGACGGATATTTCACTCAGTACCTGCTCAGTTCCAGACAACTTTACCAATTGGAGAATATGCGGCTGTAACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGAACTTCCCTCGAGTGTTCCTAAACAGGACAACGAGAGTCCTCCAGAACTTGATGAATATGTTGAAGCAGAGGAGCTTGTTAAAGAAAAGGTTTCAAAACGGCTCTCCAATCCTCTTGAAATCATCTGGAAGTCGTTCAGCCTTATATTTTTTGCTGAATGGGGTGATCGCTCAATGCTTGCAACCATTGCTCTTGGAGCTGCACAGTCTCCTTGGGGCGTGGCTACGGGAGCTATCACTGGACACCTAATTGCAACCACCATTGCCATTCTAGGAGGAGCACTTCTTGCAAATTACATTTCTGAAAAACTGGTCGGCTATGTGGGCGGTGTACTCTTCTTGATTTTTGCAGTAGCAACCTTTTTCGGAGTTTTCTGA

Protein sequence

MGQALVQNDAGGFIFFSTPSFTNSRRAFHFISATATWQSSELRYGFVGGDSTSLPSNFTLEPPAAGENYGFVVGKKFPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYGKIRAHSSNVSIGSDGYKHEEEKEGQHVISSSAPADSSSKTEKSPNGLPYPLSIALVLIGCSLVFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFFGVF

Homology

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BLAST of CmaCh06G012710 vs. ExPASy Swiss-Prot
Match: Q9T0H9 (Protein PAM71-homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM71-HL PE=1 SV=2)

HSP 1 Score: 420.2 bits (1079), Expect = 2.7e-116
Identity = 235/342 (68.71%), Postives = 270/342 (78.95%), Query Frame = 0


Query: 75  KKFPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYGKIRAHSSNVSIGSDGYK 134
           +K PF  L ++LP   +S     K     L+CRR  +L+  +GK R  +S+  +GS  Y 
Sbjct: 23  QKLPFLSLSETLPCPKSS----RKPTFLPLRCRRRPKLDLLWGKFRVRASDAGVGSGSYS 82

Query: 135 HEEEKEGQHVISSSAPADSSSKTEKSPNGLPYPLSIALVLIGCSLVFSLIAFVKGGPSSI 194
             EE   Q      +PA +SS++ K     PY LSIALVL+ C LVFSLI FVKGGPSS+
Sbjct: 83  GGEEDGSQSSSLDQSPA-TSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKGGPSSV 142

Query: 195 LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIG 254
           LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQY+K LVLLGSMGALSLMT+LSV+IG
Sbjct: 143 LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVIG 202

Query: 255 RIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEYVEA 314
           +IF SVPAQFQTTLPIGEYAA+ LL+FFGLKSIKDAW+LP    K   E+  EL EY EA
Sbjct: 203 KIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSEA 262

Query: 315 EELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGHL 374
           EELVKEK SK+L+NPLEI+WKSFSL+FFAEWGDRSMLAT+ALGAAQSP GVA+GAI GHL
Sbjct: 263 EELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGHL 322

Query: 375 IATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFFGVF 417
           +AT +AI+GGA LANYISEKLVGYVGG LFL+FA ATFFGVF
Sbjct: 323 VATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATFFGVF 359

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BLAST of CmaCh06G012710 vs. ExPASy Swiss-Prot
Match: Q2R2Z4 (GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0544500 PE=2 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 2.0e-100
Identity = 204/299 (68.23%), Postives = 246/299 (82.27%), Query Frame = 0


Query: 119 IRAHSSNVSIGSDGYK-HEEEKEGQHVISSSAPADSSSKTEKSPNGLPYPLSIALVLIGC 178
           +R  +SNV++G+  Y+  E    G+H + SSA  DS+  T K P+G  YP SIA VL+ C
Sbjct: 52  VRVQTSNVNVGAGSYEGGEAGSHGEH-LDSSATRDSNKPT-KPPSGSRYPQSIAAVLLLC 111

Query: 179 SLVFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLL 238
           +L  + I F KG PS+++A +AKSGFTAAF+LIFVSEIGDKTFFIAALLAMQY++ LVLL
Sbjct: 112 ALASAFIVFFKGQPSAVVAMLAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYQRALVLL 171

Query: 239 GSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSV 298
           GSM ALSLMT++SVIIGRIF SVPAQFQTTLPIGEYAA+ LL FFG KSIKDAW+LP + 
Sbjct: 172 GSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYAAIALLAFFGFKSIKDAWQLPDNA 231

Query: 299 PKQDNESPPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALG 358
              + +   E  E  EAEELVKEKV+K+L++PLE++WKSFSL+FFAEWGDRSMLATIALG
Sbjct: 232 -NGNLQGNSESGELAEAEELVKEKVAKKLTSPLEVLWKSFSLVFFAEWGDRSMLATIALG 291

Query: 359 AAQSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFFGVF 417
           AAQSP+GVA+GAI GHL+AT +AI+GGA LANY+SEKLVG +GGVLFL+FAVATFFGVF
Sbjct: 292 AAQSPFGVASGAIAGHLVATFLAIVGGAFLANYLSEKLVGLIGGVLFLLFAVATFFGVF 347

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BLAST of CmaCh06G012710 vs. ExPASy Swiss-Prot
Match: Q94AX5 (Protein PAM71, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM71 PE=1 SV=2)

HSP 1 Score: 169.1 bits (427), Expect = 1.1e-40
Identity = 107/218 (49.08%), Postives = 139/218 (63.76%), Query Frame = 0


Query: 201 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSV 260
           SGF +AF LIF SE+GDKTFFIAALLA +     V +G+ GAL +MT++SV++GR FH V
Sbjct: 157 SGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYV 216

Query: 261 ----PAQF-QTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEYVEAE 320
               P +F  T LPI + AAV LL++FG+ ++ DA    S   K D       +E  EAE
Sbjct: 217 DEVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDA---VSDEGKAD-------EEQKEAE 276

Query: 321 ELVKEKVSK--RLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGH 380
             V E       +      I  +F+L+F AEWGD+S  +TIAL AA SP GV  GA+ GH
Sbjct: 277 LAVSELSGNGAGIVAAANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGH 336

Query: 381 LIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVAT 412
             AT +A+LGG+LL N++SEK + YVGGVLFL+FA  T
Sbjct: 337 GAATLLAVLGGSLLGNFLSEKAIAYVGGVLFLVFAAVT 364

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BLAST of CmaCh06G012710 vs. ExPASy Swiss-Prot
Match: Q5NAY7 (GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0221700 PE=3 SV=2)

HSP 1 Score: 161.8 bits (408), Expect = 1.7e-38
Identity = 101/222 (45.50%), Postives = 140/222 (63.06%), Query Frame = 0


Query: 201 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSV 260
           +GF +AF LIF SE+GD+TFFIAALLA +    ++ LG+ GAL++MT++SV++GR FH V
Sbjct: 126 TGFASAFLLIFFSELGDRTFFIAALLAARNSGAIIFLGTFGALAVMTIISVVLGRAFHYV 185

Query: 261 ----PAQF-QTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEYVEAE 320
               P  F  T  P+ ++ A  LL+++G+ ++ DA          D E   +++E  E  
Sbjct: 186 DGIIPFSFGGTDFPVDDFLAACLLVYYGITTLLDA-------ASGDEE---KMNEEQEEA 245

Query: 321 ELVKEKVSKRLSNPLEI------IWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 380
           EL    VSK L N   I      I  +F L+F AEWGD+S  +TIAL AA SP GV  G+
Sbjct: 246 ELA---VSKFLGNGAGIISAASTIASTFVLVFIAEWGDKSFFSTIALAAASSPLGVIAGS 305

Query: 381 ITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVAT 412
           + GH +AT IA+LGG+LL  ++SEK+V Y+GG LFL FA  T
Sbjct: 306 LAGHAVATLIAVLGGSLLGTFLSEKIVAYIGGSLFLAFAAVT 334

[Close]

BLAST of CmaCh06G012710 vs. ExPASy Swiss-Prot
Match: B8AAM2 (GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_00941 PE=3 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-38
Identity = 101/222 (45.50%), Postives = 140/222 (63.06%), Query Frame = 0


Query: 201 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSV 260
           +GF +AF LIF SE+GD+TFFIAALLA +    ++ LG+ GAL++MT++SV++GR FH V
Sbjct: 126 TGFASAFLLIFFSELGDRTFFIAALLAARNSGAIIFLGTFGALAVMTIISVVLGRAFHYV 185

Query: 261 ----PAQF-QTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEYVEAE 320
               P  F  T  P+ ++ A  LL+++G+ ++ DA          D E   +++E  E  
Sbjct: 186 DGIIPFSFGGTDFPVDDFLAACLLVYYGVTTLLDA-------ASGDEE---KMNEEQEEA 245

Query: 321 ELVKEKVSKRLSNPLEI------IWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 380
           EL    VSK L N   I      I  +F L+F AEWGD+S  +TIAL AA SP GV  G+
Sbjct: 246 ELA---VSKFLGNGAGIISAASTIASTFVLVFIAEWGDKSFFSTIALAAASSPLGVIAGS 305

Query: 381 ITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVAT 412
           + GH +AT IA+LGG+LL  ++SEK+V Y+GG LFL FA  T
Sbjct: 306 LAGHAVATLIAVLGGSLLGTFLSEKIVAYIGGSLFLAFAAVT 334

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BLAST of CmaCh06G012710 vs. TAIR 10
Match: AT4G13590.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 420.2 bits (1079), Expect = 1.9e-117
Identity = 235/342 (68.71%), Postives = 270/342 (78.95%), Query Frame = 0


Query: 75  KKFPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYGKIRAHSSNVSIGSDGYK 134
           +K PF  L ++LP   +S     K     L+CRR  +L+  +GK R  +S+  +GS  Y 
Sbjct: 23  QKLPFLSLSETLPCPKSS----RKPTFLPLRCRRRPKLDLLWGKFRVRASDAGVGSGSYS 82

Query: 135 HEEEKEGQHVISSSAPADSSSKTEKSPNGLPYPLSIALVLIGCSLVFSLIAFVKGGPSSI 194
             EE   Q      +PA +SS++ K     PY LSIALVL+ C LVFSLI FVKGGPSS+
Sbjct: 83  GGEEDGSQSSSLDQSPA-TSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKGGPSSV 142

Query: 195 LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIG 254
           LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQY+K LVLLGSMGALSLMT+LSV+IG
Sbjct: 143 LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVIG 202

Query: 255 RIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEYVEA 314
           +IF SVPAQFQTTLPIGEYAA+ LL+FFGLKSIKDAW+LP    K   E+  EL EY EA
Sbjct: 203 KIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSEA 262

Query: 315 EELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGHL 374
           EELVKEK SK+L+NPLEI+WKSFSL+FFAEWGDRSMLAT+ALGAAQSP GVA+GAI GHL
Sbjct: 263 EELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGHL 322

Query: 375 IATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFFGVF 417
           +AT +AI+GGA LANYISEKLVGYVGG LFL+FA ATFFGVF
Sbjct: 323 VATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATFFGVF 359

[Close]

BLAST of CmaCh06G012710 vs. TAIR 10
Match: AT4G13590.2 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 419.5 bits (1077), Expect = 3.2e-117
Identity = 235/342 (68.71%), Postives = 269/342 (78.65%), Query Frame = 0


Query: 75  KKFPFSPLLDSLPSCSASGSVFAKTVSKSLKCRRVTRLNTKYGKIRAHSSNVSIGSDGYK 134
           +K PF  L ++LP   +S     K      KCRR  +L+  +GK R  +S+  +GS  Y 
Sbjct: 23  QKLPFLSLSETLPCPKSS----RKPTFLPCKCRRRPKLDLLWGKFRVRASDAGVGSGSYS 82

Query: 135 HEEEKEGQHVISSSAPADSSSKTEKSPNGLPYPLSIALVLIGCSLVFSLIAFVKGGPSSI 194
             EE   Q      +PA +SS++ K     PY LSIALVL+ C LVFSLI FVKGGPSS+
Sbjct: 83  GGEEDGSQSSSLDQSPA-TSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKGGPSSV 142

Query: 195 LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIG 254
           LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQY+K LVLLGSMGALSLMT+LSV+IG
Sbjct: 143 LAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVIG 202

Query: 255 RIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEYVEA 314
           +IF SVPAQFQTTLPIGEYAA+ LL+FFGLKSIKDAW+LP    K   E+  EL EY EA
Sbjct: 203 KIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSEA 262

Query: 315 EELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGHL 374
           EELVKEK SK+L+NPLEI+WKSFSL+FFAEWGDRSMLAT+ALGAAQSP GVA+GAI GHL
Sbjct: 263 EELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGHL 322

Query: 375 IATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFFGVF 417
           +AT +AI+GGA LANYISEKLVGYVGG LFL+FA ATFFGVF
Sbjct: 323 VATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATFFGVF 359

[Close]

BLAST of CmaCh06G012710 vs. TAIR 10
Match: AT1G64150.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 169.1 bits (427), Expect = 7.6e-42
Identity = 107/218 (49.08%), Postives = 139/218 (63.76%), Query Frame = 0


Query: 201 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSV 260
           SGF +AF LIF SE+GDKTFFIAALLA +     V +G+ GAL +MT++SV++GR FH V
Sbjct: 157 SGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYV 216

Query: 261 ----PAQF-QTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEYVEAE 320
               P +F  T LPI + AAV LL++FG+ ++ DA    S   K D       +E  EAE
Sbjct: 217 DEVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDA---VSDEGKAD-------EEQKEAE 276

Query: 321 ELVKEKVSK--RLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGH 380
             V E       +      I  +F+L+F AEWGD+S  +TIAL AA SP GV  GA+ GH
Sbjct: 277 LAVSELSGNGAGIVAAANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGH 336

Query: 381 LIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVAT 412
             AT +A+LGG+LL N++SEK + YVGGVLFL+FA  T
Sbjct: 337 GAATLLAVLGGSLLGNFLSEKAIAYVGGVLFLVFAAVT 364

[Close]

BLAST of CmaCh06G012710 vs. TAIR 10
Match: AT5G36290.1 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 136.3 bits (342), Expect = 5.4e-32
Identity = 95/224 (42.41%), Postives = 139/224 (62.05%), Query Frame = 0


Query: 195 LAAVAKSGFTA---AFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSV 254
           L A A S F A   +FS+I V+EIGD+TF IAAL+AM++ K  VL G++ AL +MT+LS 
Sbjct: 74  LDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILST 133

Query: 255 IIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEY 314
            +GRI  ++ ++  T       AA  L  FFGL+ +  AW    S   Q  E   E++E 
Sbjct: 134 GLGRIVPNLISRKHT-----NSAATVLYAFFGLRLLYIAWRSTDSKSNQKKEM-EEVEEK 193

Query: 315 VEAEE--LVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 374
           +E+ +      ++  R   P  I  +SF L F AEWGDRS +ATIAL   ++  GVA GA
Sbjct: 194 LESGQGKTPFRRLFSRFCTP--IFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIGA 253

Query: 375 ITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFF 414
             GH + T++A++GG++LA+ IS++ V  VGG+LFL F+V+++F
Sbjct: 254 SIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYF 289

[Close]

BLAST of CmaCh06G012710 vs. TAIR 10
Match: AT5G36290.2 (Uncharacterized protein family (UPF0016) )

HSP 1 Score: 136.3 bits (342), Expect = 5.4e-32
Identity = 95/224 (42.41%), Postives = 139/224 (62.05%), Query Frame = 0


Query: 195 LAAVAKSGFTA---AFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSV 254
           L A A S F A   +FS+I V+EIGD+TF IAAL+AM++ K  VL G++ AL +MT+LS 
Sbjct: 74  LDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVMTILST 133

Query: 255 IIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWELPSSVPKQDNESPPELDEY 314
            +GRI  ++ ++  T       AA  L  FFGL+ +  AW    S   Q  E   E++E 
Sbjct: 134 GLGRIVPNLISRKHT-----NSAATVLYAFFGLRLLYIAWRSTDSKSNQKKEM-EEVEEK 193

Query: 315 VEAEE--LVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGA 374
           +E+ +      ++  R   P  I  +SF L F AEWGDRS +ATIAL   ++  GVA GA
Sbjct: 194 LESGQGKTPFRRLFSRFCTP--IFLESFILTFLAEWGDRSQIATIALATHKNAIGVAIGA 253

Query: 375 ITGHLIATTIAILGGALLANYISEKLVGYVGGVLFLIFAVATFF 414
             GH + T++A++GG++LA+ IS++ V  VGG+LFL F+V+++F
Sbjct: 254 SIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYF 289

The following BLAST results are available for this feature:

BLAST of CmaCh06G012710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T0H9	2.7e-116	68.71	Protein PAM71-homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM71-HL...	[more]
Q2R2Z4	2.0e-100	68.23	GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=O...	[more]
Q94AX5	1.1e-40	49.08	Protein PAM71, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM71 PE=1 SV=2	[more]
Q5NAY7	1.7e-38	45.50	GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=O...	[more]
B8AAM2	2.2e-38	45.50	GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI...	[more]

BLAST of CmaCh06G012710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13590.1	1.9e-117	68.71	Uncharacterized protein family (UPF0016)	[more]
AT4G13590.2	3.2e-117	68.71	Uncharacterized protein family (UPF0016)	[more]
AT1G64150.1	7.6e-42	49.08	Uncharacterized protein family (UPF0016)	[more]
AT5G36290.1	5.4e-32	42.41	Uncharacterized protein family (UPF0016)	[more]
AT5G36290.2	5.4e-32	42.41	Uncharacterized protein family (UPF0016)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001727	Gdt1 family	PFAM	PF01169	UPF0016	coord: 205..283 e-value: 1.6E-19 score: 69.9 coord: 335..408 e-value: 6.9E-21 score: 74.3
IPR001727	Gdt1 family	PANTHER	PTHR12608	TRANSMEMBRANE PROTEIN HTP-1 RELATED	coord: 98..416
IPR001727	Gdt1 family	PROSITE	PS01214	UPF0016	coord: 214..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..160
None	No IPR available	PANTHER	PTHR12608:SF7	PROTEIN PAM71-HOMOLOG, CHLOROPLASTIC	coord: 98..416

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G012710.1	CmaCh06G012710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0032468	Golgi calcium ion homeostasis
biological_process	GO:0032472	Golgi calcium ion transport
biological_process	GO:0071421	manganese ion transmembrane transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0015085	calcium ion transmembrane transporter activity
molecular_function	GO:0005384	manganese ion transmembrane transporter activity