CmaCh06G012540 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G012540
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr06: 8343669 .. 8343969 (-)
RNA-Seq ExpressionCmaCh06G012540
SyntenyCmaCh06G012540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGGTAGCCGCACGGCATTTGGCAGATTCTTCCTCTTCGCGGTCTCCGTCGTTCTCACTGAGTCACAGCTCGGTACATATAAATACAGCCAATCATCGCTCGGCTTTCGAGCCGTCGTTTTCTCCATTCTTTCTCTGCTGAAGCCCTAGAGTTTCTCCTCTTGCAGCCATCAACTTCACCGAGGTAGATTCTGTTCCTATTTTCTGTTTCTTTGCTAAGAAAATGATGGAAGTGGAAGTGGAAAATGATAGAAACATATGTCCCTGGAGCTTTTGGCTGCCTGCTTATTTGTTTTAA

mRNA sequence

ATGCCGGGTAGCCGCACGGCATTTGGCAGATTCTTCCTCTTCGCGGTCTCCGTCGTTCTCACTGAGTCACAGCTCGCCATCAACTTCACCGAGGTAGATTCTGTTCCTATTTTCTGTTTCTTTGCTAAGAAAATGATGGAAGTGGAAGTGGAAAATGATAGAAACATATGTCCCTGGAGCTTTTGGCTGCCTGCTTATTTGTTTTAA

Coding sequence (CDS)

ATGCCGGGTAGCCGCACGGCATTTGGCAGATTCTTCCTCTTCGCGGTCTCCGTCGTTCTCACTGAGTCACAGCTCGCCATCAACTTCACCGAGGTAGATTCTGTTCCTATTTTCTGTTTCTTTGCTAAGAAAATGATGGAAGTGGAAGTGGAAAATGATAGAAACATATGTCCCTGGAGCTTTTGGCTGCCTGCTTATTTGTTTTAA

Protein sequence

MPGSRTAFGRFFLFAVSVVLTESQLAINFTEVDSVPIFCFFAKKMMEVEVENDRNICPWSFWLPAYLF
Homology
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BLAST of CmaCh06G012540 vs. NCBI nr
Match: KAG7028768.1 (hypothetical protein SDJN02_09949, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 62/68 (91.18%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 1  MPGSRTAFGRFFLFAVSVVLTESQLAINFTEVDSVPIFCFFAKKMMEVEVENDRNICPWS 60
          MPGSRTAFGRFFLFAVS+VLTESQLAINF EVDSV I+CFFAKKMMEVEVENDRNIC W 
Sbjct: 1  MPGSRTAFGRFFLFAVSIVLTESQLAINFIEVDSVAIYCFFAKKMMEVEVENDRNICHWR 60

Query: 61 FWLPAYLF 69
          FWLPAYLF
Sbjct: 61 FWLPAYLF 68

The following BLAST results are available for this feature:
BLAST of CmaCh06G012540 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G012540 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G012540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028768.11.4e-2791.18hypothetical protein SDJN02_09949, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmaCh06G012540 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G012540.1CmaCh06G012540.1mRNA