CmaCh06G012130 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G012130
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr06: 8087856 .. 8090831 (-)
RNA-Seq Expression	CmaCh06G012130
Synteny	CmaCh06G012130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCATGGCCAATCAAAAGCCAATTCCGTTCTCAGAGATATTCATAGATCGCTGTAAATTGTTTAAATTGGGGAATTCAAATTTCAGCATCTAGTCAATCGGTAGGGTCTTGGGATTTAGGATTCGGAGGCGGAATTATGAAGGTCGAGCCTCTAAATCGTTCAAGACATGGCGTTAGCCGTTGGATCTAAATACTAATTCGCTTTTAATCGGAATTAGGTGCTGCAGATTCTCGAACTCATAGTTCTGGGTATTTGCATCACATCAGAGATAATATATGGCGTCCAGTTTCACTCAATCATCTGGAAATTTAGTTGAGATGGTATTTTATATCTATCTATATATACCTCTCTCTCTATATATAGATATATATGTATGCTTAAAATAGCAACTGCACTTCTTTCACCATATATTTTTCAAGGGTTTGCTGGTTGGAGAAATCATGCGCCAAAATGTTAGCCTACAGTTTAGGGGATTCTGTTTTTTCTACATATCTTTATATATTGCTAAGTTTTATATTAAAGAAGTTTATTACAATGTCTTGTGTGTTAAGCGAACTCATTGACCCATCTTTGCTTTTGTTCACTATTATCCACCAATAAGGGGAGTCTTTTGTTAAGCGAACTCATTGACCCATCTTTGCTTTTGTTCACTATTATCCACCAATAAGGGGAGTCTTTTGATCATTGTTAAGATTGTGCAATATGTATCAAGTTTTTATGGCTCTGATTTGAGTGTAGAGAATTTTAACTGATTGGAACAATTTTTTAATATAGTGGACTCATAATAACCTGTTTAAAACTAATGACTAAATTAACTGATTGGAACAATTTTTTAATATAGTGGACTCATAATAACCTGTTTAAAACTAATGACTAAAGGGCATTGAATTTCATTATCTTAAAGCAGGGTCGGTTCTGTGGTCTGACTAGATTATGTAACTTTTAGATTTTTTTTATATGGCTTGGAAGAATATAGAGAACCATTTCTAGTTTCTGGTTCTAAGTCCTTTTAGATTTTTTTTATATGGCTTGGAAGAATATAGAGAACCATTTCTAGTTTCTGGTTCTAAGTCTTGCTTGAACATGTTATGTTTTTAAAAATTGGTTTGTTGTAAAGGTTTTTCCAGTTAGAATGGGATAAATGGAGTATTAAATCAGTTGAGCTACGTGCTCGTGCTTTTCTTGTTCAATTCGTTATTCTTCTCAATTCTATCTTTTCTTTATTCTTCCTTAGGCTTCCTATACTAGACCCTCAAAAGATTTGAGTCAACAGAAGTGCTCCATGAGGGAGTGTTGTACATTCAATTTGAAAAAAGCCCTCAAAAGATTTGAGTCAACAGAAGTGCTCCATGAGGGAGTGTTGTACATTCAATTTGAAAAAAGTGATAATAAAGTGCATTAGAACAAGAAGTTTAGTTTGAAATTATTAGGTCAAGGTCCATACCTCTTTTTATTGTCGTTAAGTAAATTTCTTTTCTGGAAGGTCCGACTCTGATTCAGTCAGGTTAATGCTCTTTTTATTGTCGTTAAGTAAATTTCTTTTCTGGAAGGTCCGACTCTGATTCAGTCAGGTTAATGGAAGAACAATGATTCTTAATTTTTTTATCTAAGTCTTATTACTGGGACGTGCATAAAGATGAGTGCAACCGAGTTTAGAGTACCTCCTTAATTTCTATGGGTATTGGACCCAAATCTGCAGTTTTTCTTAATTAACTATTGCATAGTTGTAGCAGTCCAACCTCATGGCTAACAGATATTGTATTTTTTGGGCTTTTCCCTCGAGGTTTTAAAATGAGTTCCCTAGTGAGAGGTTTCTACACTTAAGGAATGTTTCATTCCCTTCTCCAATCGATTTAAAATGAGTTCCCTAGTGAGAGGTTTCTACACTTAAGGAATGTTTCATTCCCTTCTCCAATCGAGCGTGGGATTTCACAATCCACCCTCCTTGTGACCTAACATACTCGTTGCACAGGGCCTGGTGTCTGACTTTGATACCGTTTGTAACAGTCCAAGCCTATCGTTTGTAACAGCACAGCGTGCTTTTGGGCTTCCACACTGACCCGTCAACTGACCCTACCCGCCTAGTGACCCGAAAGTCAACACCGGCCTGACCCGACCCATATAGCTGATTCCGACTCACTACCCAAACCAGATCCGAAGGTAAACATGACCCAAGGTTCAGAGACCCAATTCTCGCAAATTTACATCGTTTTGACTCGAATTCTACAACTTCTTTAGTTTTGATATATTTTCTTAATGCAGGACTTGAAGATCTGGAAAGGAATTAAAAATTTGTTAAAGACCCTCCCTCAAGATTTTAAAATGCCTCTTCATGCCTCTTCTAGAGAGATGTTTTCACAATGTTTCGTTTCCCCTCTCCAACAGATGTGGGATCTCACAATATCATTCGGGTTTTTATGCAAAATCTGCACTCAATTTTAGTGGACATCTGAACGTCATTTATCAGTTTAGCAACTGCAATCAAATTATGCATTCCTTTTCTCCCCATTTTCTTGGCCGCTCTTGTTTGTGTGCTTGTCTATGTATGTTGCAAGAATCTAGCTATTGTGTGTTATAAATTTTGCTTACAATTGTCGCTATACACTGCCAGTGCCGTTAATACTTCATTGCAGCTTCTGGATCCCTTTTTGTCCAGCCAGAATAACATTTTGAATCCCTTGCAGAAAACAAAACAAACAGAGTGCCATTATATGGATATAACAGTACCTGGAAAGAATGTTTCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATCTCTTACTCAGAACCAGAATCAGCTCTCTCTTCAAAGCGACCATCTGGAAAGCTCAATAGCAAAAACCTCAATCTGGTGGAAGGGAAAGAATTTGATGCAGATGAGAAATATAGATCTGAGCTGATTGCTATTTCCTTCCTCGAGTCGCCACCCGAAATTGGAAGTGTACCCGTCGGCAAACTCAAAGGTTAG

mRNA sequence

ATGGGATTCATGGCCAATCAAAAGCCAATTCCGTTCTCAGAGATATTCATAGATCGCTGTGCTGCAGATTCTCGAACTCATAGTTCTGGGTATTTGCATCACATCAGAGATAATATATGGCGTCCAGTTTCACTCAATCATCTGGAAATTTATGCCGTTAATACTTCATTGCAGCTTCTGGATCCCTTTTTGTCCAGCCAGAATAACATTTTGAATCCCTTGCAGAAAACAAAACAAACAGAGTGCCATTATATGGATATAACAGTACCTGGAAAGAATGTTTCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATCTCTTACTCAGAACCAGAATCAGCTCTCTCTTCAAAGCGACCATCTGGAAAGCTCAATAGCAAAAACCTCAATCTGGTGGAAGGGAAAGAATTTGATGCAGATGAGAAATATAGATCTGAGCTGATTGCTATTTCCTTCCTCGAGTCGCCACCCGAAATTGGAAGTGTACCCGTCGGCAAACTCAAAGGTTAG

Coding sequence (CDS)

ATGGGATTCATGGCCAATCAAAAGCCAATTCCGTTCTCAGAGATATTCATAGATCGCTGTGCTGCAGATTCTCGAACTCATAGTTCTGGGTATTTGCATCACATCAGAGATAATATATGGCGTCCAGTTTCACTCAATCATCTGGAAATTTATGCCGTTAATACTTCATTGCAGCTTCTGGATCCCTTTTTGTCCAGCCAGAATAACATTTTGAATCCCTTGCAGAAAACAAAACAAACAGAGTGCCATTATATGGATATAACAGTACCTGGAAAGAATGTTTCTGAGGAAGTGACTCGTGAGTCGCTTATCGCCATCTCTTACTCAGAACCAGAATCAGCTCTCTCTTCAAAGCGACCATCTGGAAAGCTCAATAGCAAAAACCTCAATCTGGTGGAAGGGAAAGAATTTGATGCAGATGAGAAATATAGATCTGAGCTGATTGCTATTTCCTTCCTCGAGTCGCCACCCGAAATTGGAAGTGTACCCGTCGGCAAACTCAAAGGTTAG

Protein sequence

MGFMANQKPIPFSEIFIDRCAADSRTHSSGYLHHIRDNIWRPVSLNHLEIYAVNTSLQLLDPFLSSQNNILNPLQKTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG

Homology

[Close]

BLAST of CmaCh06G012130 vs. ExPASy TrEMBL
Match: A0A6J1IHW2 (uncharacterized protein LOC111473815 OS=Cucurbita maxima OX=3661 GN=LOC111473815 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 9.7e-44
Identity = 97/107 (90.65%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 63  FLSSQNNILNPLQKTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG 122
           F  S  N++    KTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG
Sbjct: 5   FTQSSGNLVE--MKTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG 64

Query: 123 KLNSKNLNLVEGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG 170
           KLNSKNLNLVEGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG
Sbjct: 65  KLNSKNLNLVEGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG 109

[Close]

BLAST of CmaCh06G012130 vs. ExPASy TrEMBL
Match: A0A6J1HHB9 (uncharacterized protein LOC111463263 OS=Cucurbita moschata OX=3662 GN=LOC111463263 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 2.2e-43
Identity = 96/107 (89.72%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 63  FLSSQNNILNPLQKTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG 122
           F  S  N++    KTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG
Sbjct: 5   FTQSSGNLVE--MKTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG 64

Query: 123 KLNSKNLNLVEGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG 170
           KLNSKNLNLVEGKEFDADEKYRSELI+ISFLESPPEIGSVPVGKLKG
Sbjct: 65  KLNSKNLNLVEGKEFDADEKYRSELISISFLESPPEIGSVPVGKLKG 109

[Close]

BLAST of CmaCh06G012130 vs. ExPASy TrEMBL
Match: A0A5A7U641 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003470 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.9e-23
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 85  MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNL--------VEGKE 144
           MDITVPG+N  EEVTRESLI+ISY EPE+ LSSKRPS KL+S+N+NL        VEGKE
Sbjct: 1   MDITVPGRNAPEEVTRESLISISYEEPETILSSKRPSEKLSSENINLANGINHNQVEGKE 60

Query: 145 FDADEKYRSELIAISFLESPPEIGSVPV 165
           +D DEK+RSELIAISFLES PE GSVPV
Sbjct: 61  YDGDEKFRSELIAISFLESLPETGSVPV 88

[Close]

BLAST of CmaCh06G012130 vs. ExPASy TrEMBL
Match: A0A0A0L967 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127140 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 85  MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNL--------VEGKE 144
           MD TVPG+N  EEVTRESLI+ISY EPE+ LSS +PS K++ +N+NL        +EGKE
Sbjct: 1   MDTTVPGRNAPEEVTRESLISISYEEPETVLSSNQPSEKISRENINLANGINHNQMEGKE 60

Query: 145 FDADEKYRSELIAISFLESPPEIGSVPVGKLKG 170
           +D DEK+RSELIAISFLES PE GSVPV +LKG
Sbjct: 61  YDGDEKFRSELIAISFLESLPETGSVPVAELKG 93

[Close]

BLAST of CmaCh06G012130 vs. ExPASy TrEMBL
Match: A0A803NHW8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 0


Query: 78  KQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEF 137
           +Q + H+MD T  GK VSEEVTRESLI+ISYS PE  L+SKR   K+N +  +LVE  +F
Sbjct: 4   EQADRHFMDKTALGKEVSEEVTRESLISISYSLPEKVLTSKRSVDKVNGE--SLVERVDF 63

Query: 138 DADEKYRSELIAISFLESPPEIGSVPVGKLK 169
           D ++K RSELI+IS+ +S P++G +P G LK
Sbjct: 64  DGEDKCRSELISISYTQS-PDVGGLPDGVLK 91

[Close]

BLAST of CmaCh06G012130 vs. NCBI nr
Match: XP_022974968.1 (uncharacterized protein LOC111473815 [Cucurbita maxima])

HSP 1 Score: 186.4 bits (472), Expect = 2.0e-43
Identity = 97/107 (90.65%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 63  FLSSQNNILNPLQKTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG 122
           F  S  N++    KTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG
Sbjct: 5   FTQSSGNLVE--MKTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG 64

Query: 123 KLNSKNLNLVEGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG 170
           KLNSKNLNLVEGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG
Sbjct: 65  KLNSKNLNLVEGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG 109

[Close]

BLAST of CmaCh06G012130 vs. NCBI nr
Match: XP_022963288.1 (uncharacterized protein LOC111463263 [Cucurbita moschata])

HSP 1 Score: 185.3 bits (469), Expect = 4.5e-43
Identity = 96/107 (89.72%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 63  FLSSQNNILNPLQKTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG 122
           F  S  N++    KTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG
Sbjct: 5   FTQSSGNLVE--MKTKQTECHYMDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSG 64

Query: 123 KLNSKNLNLVEGKEFDADEKYRSELIAISFLESPPEIGSVPVGKLKG 170
           KLNSKNLNLVEGKEFDADEKYRSELI+ISFLESPPEIGSVPVGKLKG
Sbjct: 65  KLNSKNLNLVEGKEFDADEKYRSELISISFLESPPEIGSVPVGKLKG 109

[Close]

BLAST of CmaCh06G012130 vs. NCBI nr
Match: KAG6597232.1 (DAR GTPase 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-36
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 85  MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 144
           MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR
Sbjct: 1   MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNLVEGKEFDADEKYR 60

Query: 145 SELIAISFLESPPEIGSVPVGKLKG 170
           SELI+ISFLESPPEIGSVPVGKLKG
Sbjct: 61  SELISISFLESPPEIGSVPVGKLKG 85

[Close]

BLAST of CmaCh06G012130 vs. NCBI nr
Match: KAA0049081.1 (hypothetical protein E6C27_scaffold171G003100 [Cucumis melo var. makuwa] >TYK17482.1 hypothetical protein E5676_scaffold434G003470 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 3.9e-23
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 85  MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNLNL--------VEGKE 144
           MDITVPG+N  EEVTRESLI+ISY EPE+ LSSKRPS KL+S+N+NL        VEGKE
Sbjct: 1   MDITVPGRNAPEEVTRESLISISYEEPETILSSKRPSEKLSSENINLANGINHNQVEGKE 60

Query: 145 FDADEKYRSELIAISFLESPPEIGSVPV 165
           +D DEK+RSELIAISFLES PE GSVPV
Sbjct: 61  YDGDEKFRSELIAISFLESLPETGSVPV 88

[Close]

BLAST of CmaCh06G012130 vs. NCBI nr
Match: KAG6582528.1 (hypothetical protein SDJN03_22530, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.7 bits (291), Expect = 1.9e-22
Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 85  MDITVPGKNVSEEVTRESLIAISYSEPESALSSKRPSGKLNSKNL--------NLVEGKE 144
           MDITVPG N  EEVTRESLIAISY EPE+ LSSKR SGKL+S+NL        NLVEGKE
Sbjct: 1   MDITVPGGNDPEEVTRESLIAISYEEPETTLSSKRSSGKLSSENLNLVNGIDHNLVEGKE 60

Query: 145 FDADEKYRSELIAISFLESPPEIGSVPVGKLK 169
           +D  EKYRSELIAISFLESPPEIGS  V +LK
Sbjct: 61  YDV-EKYRSELIAISFLESPPEIGSGTVTELK 91

The following BLAST results are available for this feature:

BLAST of CmaCh06G012130 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G012130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IHW2	9.7e-44	90.65	uncharacterized protein LOC111473815 OS=Cucurbita maxima OX=3661 GN=LOC111473815...	[more]
A0A6J1HHB9	2.2e-43	89.72	uncharacterized protein LOC111463263 OS=Cucurbita moschata OX=3662 GN=LOC1114632...	[more]
A0A5A7U641	1.9e-23	72.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L967	1.2e-22	65.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127140 PE=4 SV=1	[more]
A0A803NHW8	1.6e-14	54.95	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CmaCh06G012130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974968.1	2.0e-43	90.65	uncharacterized protein LOC111473815 [Cucurbita maxima]	[more]
XP_022963288.1	4.5e-43	89.72	uncharacterized protein LOC111463263 [Cucurbita moschata]	[more]
KAG6597232.1	2.4e-36	98.82	DAR GTPase 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAA0049081.1	3.9e-23	72.73	hypothetical protein E6C27_scaffold171G003100 [Cucumis melo var. makuwa] >TYK174...	[more]
KAG6582528.1	1.9e-22	73.91	hypothetical protein SDJN03_22530, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh06G012130 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35282:SF2	F5D14.24 PROTEIN	coord: 75..163
None	No IPR available	PANTHER	PTHR35282	F5D14.24 PROTEIN	coord: 75..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G012130.1	CmaCh06G012130.1	mRNA