CmaCh06G011800 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G011800
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionpentatricopeptide repeat-containing protein At1g05670, mitochondrial-like
LocationCma_Chr06: 7938807 .. 7939897 (+)
RNA-Seq ExpressionCmaCh06G011800
SyntenyCmaCh06G011800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCGTCCGCCGCGTAATCTCCGATCAACCTCCGGGTTGAATGTAAGTGAAAAGCTCTTTGATGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAAATCTTTTATGGTGCATTACTGCATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTCCCCAAGTTTATAAATGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAGTCTTGCTTTTGATTACGTAGTTCAATTTTTGCCTTCCAACGACGGTACTTTGAGATTCATCTCTGTGAGTTCAGTGACAGTAGGGTCACTATTAGGTTATCCAAAGCGATTAAGCTGTATAGGGTTTGAAGATACTTTTGAGGAATTTATACCCTGTTTTTTTTGTCAAGATTATGAAATTGTTTGAATGTTGAGGAACCGCGTTTGCGTTCTTTAAGCTGGCATTTAAGGATGACTGTGAAGGAACTGTTAGGTCTTGTTGTGTTGTGTTGTAGGGAAGTTGTTTAGGTATGTGGTTCGAAAGGGACCTCTCCCTCATAATTATATGTTTAACATAATGATTCTTGGGTTTTGTAGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATTCTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCGCAAATGGCTGTAAATCTAGTATTGCTACAATCAGTTCCGTCATTGATGCCTTCTGCAGGGGGGGGGGGGGGGNGAAATTTTTTGTTGAAATTGTAGATATGTGGATCAATTATTAAGGGATATATCTGTATCTGGTTTGCTTAACGATTCTTCACTATGTCATGTAACTGTCTCAGGACTGTGCATGGGCTGGTAGATACGATGAAACCATGATGTTTTTAGAGGATTTACTCGAGAAAGGATTTCCTCCAACTGGTTGCTTTTAATTCCATTCTTGCAGAATGCGGCAGTGCAAGTTTAGAAGAGAGAGCATTTTATGCTTATGGTACAGTGGCGAATTTGGTTTAA

mRNA sequence

ATGGTATCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCGTCCGCCGCGTAATCTCCGATCAACCTCCGGGTTGAATGTAAGTGAAAAGCTCTTTGATGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAAATCTTTTATGGTGCATTACTGCATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTCCCCAAGTTTATAAATGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAGTCTTGCTTTTGATTACGTAGTTCAATTTTTGCCTTCCAACGACGGTACTTTGAGATTCATCTCTGTGAGTTCAGTGACAGGAAGTTGTTTAGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATTCTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCGCAAATGGCTAATGCGGCAGTGCAAGTTTAGAAGAGAGAGCATTTTATGCTTATGGTACAGTGGCGAATTTGGTTTAA

Coding sequence (CDS)

ATGGTATCCCTCTCCCAGTTCTTTCCCGCCTCTGTAACTCGCCGTCCGCCGCGTAATCTCCGATCAACCTCCGGGTTGAATGTAAGTGAAAAGCTCTTTGATGCTGCGCTGCCTTACAATGTTTGTCAATGTGCGTCGCCTACAGAAATCTTTTATGGTGCATTACTGCATTGGTCTTCTTCTTTGAGTTCACCCCAAACCACATTCCCCAAGTTTATAAATGAGTATTGTTCGTCGTCTTCTTCGGATTTGGATAGTCTTGCTTTTGATTACGTAGTTCAATTTTTGCCTTCCAACGACGGTACTTTGAGATTCATCTCTGTGAGTTCAGTGACAGGAAGTTGTTTAGAAAGGTTGGAGCATGTGACGAGCAAATTTAGCTGTGAACCAGATGTTTATTCGCATAATTCTGTGATAAATGCAAACTGCTTAAAAGGGCAGTCATCACAGGCACTTCACTGGGTGAATTTGATGATCGCAAATGGCTAA

Protein sequence

MVSLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFYGALLHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSCLERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG
Homology
BLAST of CmaCh06G011800 vs. ExPASy TrEMBL
Match: A0A6J1IER3 (pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111473475 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.6e-40
Identity = 98/162 (60.49%), Postives = 98/162 (60.49%), Query Frame = 0

Query: 1   MVSLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFYGALLHWSS 60
           MVSLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFY        
Sbjct: 1   MVSLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFY-------- 60

Query: 61  SLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSCLERLE 120
                                                                   ERLE
Sbjct: 61  --------------------------------------------------------ERLE 98

Query: 121 HVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 163
           HVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG
Sbjct: 121 HVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 98

BLAST of CmaCh06G011800 vs. ExPASy TrEMBL
Match: A0A0A0L7U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128950 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 56  LHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSC 115
           +HWSSSLSS QT  PK  NEYCSSSSSD  + +FDY+ QFLPSNDGTL+ ISV+SVT + 
Sbjct: 14  VHWSSSLSSSQTLIPKLFNEYCSSSSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTND 73

Query: 116 LERLEHVTSK 126
             R+    SK
Sbjct: 74  RRRVTVGLSK 83

BLAST of CmaCh06G011800 vs. ExPASy TrEMBL
Match: A0A0A0L7U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128950 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.8e-10
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 117 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 163
           E L HV  KF CEPDVYS+N VINANCLKGQSS ALH +NLMI NG
Sbjct: 277 EALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENG 322


HSP 2 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 56  LHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSC 115
           +HWSSSLS  QT  PKF+N+Y SSSSSD  + AFDY+ QFLPSNDGTL+ +SVSSVT + 
Sbjct: 14  VHWSSSLSPFQTLTPKFLNKYSSSSSSDSSTCAFDYIAQFLPSNDGTLKLVSVSSVTTND 73

Query: 116 LERLEHVTSK 126
             R+    SK
Sbjct: 74  RRRITVGLSK 83

BLAST of CmaCh06G011800 vs. ExPASy TrEMBL
Match: A0A6J1IVM8 (pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita maxima OX=3661 GN=LOC111479659 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.6e-11
Identity = 36/46 (78.26%), Postives = 38/46 (82.61%), Query Frame = 0

Query: 117 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 163
           E L HV  KF CEPDVYS+N VINA CL+GQSS ALHWVNLMIANG
Sbjct: 277 EGLLHVMRKFRCEPDVYSYNIVINATCLRGQSSDALHWVNLMIANG 322


HSP 2 Score: 83.2 bits (204), Expect = 1.1e-12
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 56  LHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSC 115
           +HWSSSLS  QT  PKF+N+Y SSSSSD  + AFDY+ QFLPSNDGTL+ +SVSSVT + 
Sbjct: 14  VHWSSSLSPFQTLTPKFLNKYSSSSSSDSSTCAFDYIAQFLPSNDGTLKLVSVSSVTTND 73

Query: 116 LERLEHVTSK 126
             R+    SK
Sbjct: 74  RRRITVGLSK 83

BLAST of CmaCh06G011800 vs. ExPASy TrEMBL
Match: A0A6J1E9F2 (pentatricopeptide repeat-containing protein At5g39710-like OS=Cucurbita moschata OX=3662 GN=LOC111431987 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.0e-10
Identity = 34/46 (73.91%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 117 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 163
           E L HV  KF CEPDVYS+N VINA CL+GQSS ALHWVN+MI NG
Sbjct: 277 EGLLHVMRKFRCEPDVYSYNIVINATCLRGQSSDALHWVNMMIENG 322


HSP 2 Score: 77.8 bits (190), Expect = 4.6e-11
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 117 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 163
           E L HV  KF CEPDVY++N +INANCL+GQSS ALHWVNLMIANG
Sbjct: 276 EGLLHVMRKFRCEPDVYAYNMLINANCLEGQSSDALHWVNLMIANG 321

BLAST of CmaCh06G011800 vs. NCBI nr
Match: XP_022974740.1 (pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-40
Identity = 98/162 (60.49%), Postives = 98/162 (60.49%), Query Frame = 0

Query: 1   MVSLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFYGALLHWSS 60
           MVSLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFY        
Sbjct: 1   MVSLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFY-------- 60

Query: 61  SLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSCLERLE 120
                                                                   ERLE
Sbjct: 61  --------------------------------------------------------ERLE 98

Query: 121 HVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 163
           HVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG
Sbjct: 121 HVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 98

BLAST of CmaCh06G011800 vs. NCBI nr
Match: KAG6597254.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-33
Identity = 87/160 (54.37%), Postives = 90/160 (56.25%), Query Frame = 0

Query: 3   SLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFYGALLHWSSSL 62
           SLSQFFPASVTR PPRNLRST GLNVSEK F+AALPYNVCQCASPTE+F           
Sbjct: 26  SLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPTELF----------- 85

Query: 63  SSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSCLERLEHV 122
                                                                 ERLEHV
Sbjct: 86  -----------------------------------------------------CERLEHV 121

Query: 123 TSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 163
           TSKFSCEPDVY HN+VINANCLKGQSSQALHWVNLMI NG
Sbjct: 146 TSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNG 121

BLAST of CmaCh06G011800 vs. NCBI nr
Match: KAG7028723.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-33
Identity = 87/160 (54.37%), Postives = 90/160 (56.25%), Query Frame = 0

Query: 3   SLSQFFPASVTRRPPRNLRSTSGLNVSEKLFDAALPYNVCQCASPTEIFYGALLHWSSSL 62
           SLSQFFPASVTR PPRNLRST GLNVSEK F+AALPYNVCQCASPTE+F           
Sbjct: 26  SLSQFFPASVTRPPPRNLRSTYGLNVSEKRFEAALPYNVCQCASPTELF----------- 85

Query: 63  SSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSCLERLEHV 122
                                                                 ERLEHV
Sbjct: 86  -----------------------------------------------------CERLEHV 121

Query: 123 TSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 163
           TSKFSCEPDVY HN+VINANCLKGQSSQALHWVNLMI NG
Sbjct: 146 TSKFSCEPDVYWHNTVINANCLKGQSSQALHWVNLMITNG 121

BLAST of CmaCh06G011800 vs. NCBI nr
Match: XP_031738963.1 (pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativus] >KAE8650288.1 hypothetical protein Csa_011189 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-13
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 56  LHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSC 115
           +HWSSSLSS QT  PK  NEYCSSSSSD  + +FDY+ QFLPSNDGTL+ ISV+SVT + 
Sbjct: 14  VHWSSSLSSSQTLIPKLFNEYCSSSSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTND 73

Query: 116 LERLEHVTSK 126
             R+    SK
Sbjct: 74  RRRVTVGLSK 83

BLAST of CmaCh06G011800 vs. NCBI nr
Match: XP_031738963.1 (pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativus] >KAE8650288.1 hypothetical protein Csa_011189 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-09
Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 0

Query: 117 ERLEHVTSKFSCEPDVYSHNSVINANCLKGQSSQALHWVNLMIANG 163
           E L HV  KF CEPDVYS+N VINANCLKGQSS ALH +NLMI NG
Sbjct: 277 EALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENG 322


HSP 2 Score: 83.2 bits (204), Expect = 2.3e-12
Identity = 43/70 (61.43%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 56  LHWSSSLSSPQTTFPKFINEYCSSSSSDLDSLAFDYVVQFLPSNDGTLRFISVSSVTGSC 115
           +HWSSSLS  QT  PKF+N+Y SSSSSD  + AFDY+ QFLPSNDGTL+ +SVSSVT + 
Sbjct: 14  VHWSSSLSPFQTLTPKFLNKYSSSSSSDSSTCAFDYIAQFLPSNDGTLKLVSVSSVTTND 73

Query: 116 LERLEHVTSK 126
             R+    SK
Sbjct: 74  RRRITVGLSK 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1IER31.6e-4060.49pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like OS=Cuc... [more]
A0A0A0L7U21.0e-1362.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128950 PE=4 SV=1[more]
A0A0A0L7U28.8e-1076.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128950 PE=4 SV=1[more]
A0A6J1IVM84.6e-1178.26pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita maxima O... [more]
A0A6J1E9F23.0e-1073.91pentatricopeptide repeat-containing protein At5g39710-like OS=Cucurbita moschata... [more]
Match NameE-valueIdentityDescription
XP_022974740.13.4e-4060.49pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Cucur... [more]
KAG6597254.11.1e-3354.38Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
KAG7028723.11.1e-3354.38Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
XP_031738963.12.1e-1362.86pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativus] >KAE8650... [more]
XP_031738963.11.8e-0976.09pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativus] >KAE8650... [more]

Pages

Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G011800.1CmaCh06G011800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane