CmaCh06G011560 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G011560
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	EF-hand domain-containing protein
Location	Cma_Chr06: 7778947 .. 7783092 (+)
RNA-Seq Expression	CmaCh06G011560
Synteny	CmaCh06G011560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTGGTGAATCATTATTTGCCTTCGCCGGCTACGGCCGTGGATATCCCCGCCGCGTGTCGTTTTGTGTTTTGCCAAATGCCGTTTGGTCTAGGCGGCAACGTCAAATTGAGAAAAAATGATGTCATAATTTTATATAAATAAATAATATTTTTAAAAAATGACTTATCAAATGTTAAATAGAAGAAATATCTTTTACCAAATTAATCTTGGTAATATCACTTGATTTTATTTTATATAATATTTTCTTAAAAATTAATAAAAAATTATTTGAAATTAATATATTTTTAAATTTTTATAAAAAATAAAAAAAAAATTATGAAAATTCAATCTCATAAAAATAAACAAAAAAAAATATGGTAAGAGATTGAAATAAAAGGTANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATGGTAAGAGATTGAAATAAAAGGTAGAGACCTTTTACCGTGGGTTTGACTTTTTCGAGCATGATTCTGATACCATGTTAAATTGAGAATCTTCATAATGAAAAATAAAAGTGGGATCAAAAGTACCGTCTTTGATGTTCACAATGTTCAAATAACTACCAACTAATACATAAAAATAAGGGGAAAATATAGACTAACTAAATTTTCAGAAAGATAAAATATATTACTAATAAAATCTAGTTAGAAATATCTAAGATATATTCAATAACTAATTACTTTAATATATTATTCAAATATTATATTTTAATAGAGAAGTTTTGGTACCATGTTAGATGAACACCTTCTCTACAATAGTATGATATTGTTCATTTGAGCATAAACTTGAGTGATTTTATTTTGGTTTCCCAAAATGTCTCGTGTTAATGGAGATAGTATTTGACAACCTCTACCTTTATAATTTTGTTTATAAATAAAAAAAATGAAATGAAATGAAAATATTAATTAAAAAAAAATTGATTATTCTATTTTCTCCGTATTTTGGGATAAAACAAGATGGATAACTTGCATTCCAGGAAAGGAAGGTCGCTTTATTCCAAGTTTCCTTCCGAACAGGAAAAGGAAATGTGTGGCAGAAGCAGTGTATGATTTTTTGTTTTTTGTTTTTTTGTTTTTTTTTTTTTTTTTTCAGATACAAAACCTCAGGAAATGATAAATTTCGTTATGGTTGCTACTAAGGCGGGCATCTCAATCTTCCATTCACTCGAAGAACCGATTTCAATCGCAGTTGGGGGCTGCTTTACGAGGTCTGTGATCTTCAATTGCCGTCGCTGCCGTCTAGTATGGGACAAGTCTTGGGGAGATTTGGAGGTAAATTGACCTAAACTTCACTTTTCAAATCCTTCGATTTTGAATTCGTTTTCATTTTTCTGTTTGGATCCGTCGATAAATTGATTAACGGAACAAGCGGAATGGGGAATGCGTAGTCGTAGAGTAGATCATACCGAGATCGATCTTATTAGTGATATGCGATTAACCTACAATTCTTCCTCGTTAACTGATATTGTCATAGACTTCAACCGATGAATTTATCGGTTTTGTTTCTTGTTTGGAGTGTTGGATTAGCTGATTTGTGCTGTCTCTTGTGGATTTGATACCGTGTCTGCTTGCAATTGAGGGAGACAAGATTAGAGACGGAGGGATGAGTAATTGAAGTATTTTAAAGCTTTTATACTTTCTGTTGCAGGAAAAGATTGGAGGATTAAGAAGTTGAAGATGATATCAAACAGGATATTCGATAAGATCAAAAAACAATCAGATAAGGAGGAGCTGTCATTTGAAGAATTATATATTGCCACGTTACTTGTGTTCAAGTAAGAAGCTCTATTATTTACTTCACATTTTTCCTGCTCCAATTTTTTTGTAGCTCACTCGTTTGTTTATTTATTTATTTACAACTTGGTGTTGGATATGACTCTTTATATTGTGTTCATGATCCATTGCTTTGTGAGAGAATTTGCAAAACCCATGGCTGACGGTCAGTAAGAATTGTAAGTTGGTTTGGCAAATTTCCGTTTCTTATTTCTTAAAACCCATGGCTGACGGTCAGTAAGAATTGTAAGTTGGTTTGGCAAATTTCCGTTTCTTATTTCTTGGTCCTCTAACTAAGAGGATAGAAATGTGTATGGTAATAATTTCTTGTTCTTCCATATTGCAAATTTTTAGACAAAATTATCACATAAAAATGATTTGTTTCGAATGCTAGGGAAGACGTGGAAGAGGGTGGATTGTGAGATCCCACGTCAATTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTTTCCCCTAGCAGACGGGTTTTAAAACCTTGAGGGAAACCCCAATAGGGAAAACCTAAAGAGGACACTATCTCTAGTAGTGGATTTGGGCTCTTAGATATAATGTTTATTATACATTTTACGAGTCAAAATAATAATCTGACGTTTTTTATCGGTTCTTTTTGAAAAAATTGAAAAAAACTTGATCTTGTTGAAGAAATGAGAAACAGAAACACTTATCAATTGTCAATGTTCTTCAAAAAAAAAACTTGATCTTGTTGAAGAAATGAGAAACAGAAACACTTATCAATTGTCAATGTTCTTCAAAATCTGGTAATAGAAAACAGGAAACTAGAAAAATAAATGTGATTGAACAAGTCCTGAATTTTCAAACTGGGCTTGAACTTTGATCCTTGGAGATATCTCTTGAACATCTCAAGCTCTTGGTGATCTGATGAGGCATCTGTGAACTTGGCTTAACCTGAATAAATACTTATGATGCAGTGATATTAATAAGCTGTTGTCTGGCTCACATCATGATCCGCCTTCAAGGGAACATTTCAAACAACTCATAACGGTACTCTGTTTATACAATTTATTACAAAGCTTTAACGATATGAAAAAGTGGCATCTGTTGATGATTGGGAAAGCCTAAACTCGTTGGATATTAATGCCTAACCTTGTTCACTTTAGGTCTAATGCTCAGTAATTCTTGTTCTTTACTTGGTGCTAATGAACTTGGCTGAAGTATGGCTATCAACTTGCATGTGGTGCTGCTTGTTTTATTTTCCTATTCCTATTATATCATGTTCGTCAATAATTTGTGGCTTTATTGAATTATAGCTTCCCTGCTCTTCCTGTCGCCATGTCCTTCAAAAAAAGAGGCCACTTTTGTTAACAATTTTGTTTTTATGCTTGTTTTTCTTTCGGTTTCTTTACTATGTTTTTCATCTTCCTTAGAGAAACTAGTCAAATTTCAAAACGAAAAGTGGGTTTTCTAAAACTACTTTTTTTGAGCCTGATTATTTGATTTTTTGGTGTTAGAGTTTTTGAAAATTAAGCTTATAGATCTGTAACCGCCCAAGCCCAAACCCACTTGCTAATAGATATTGTCTGTTTTGGTTCCTTACGTCCTTACGGTTTTTAATACGCATTTGCAAGGGAGAAGTGTTCACACCCTTATAAGAAATGCTTCGTTCCCTTCTCCAACCAATGTAGAATCTCACGAGATCTTTACTTCTTTTGAGTCTTTTTTTCTTTTTAATTTTCAAAATCCAAGTCAAGTTTTGAAAATTGAAAATAATAGTGTTTTTAAAAATATGCTTTTGTTTTTAGAATTAGACTAAGAATTCAAATGTATCTTTTAAAAAGGGTTAAAACCATCGTAAATAGATGATAAGGAAACAAACATAAATTTTAAAAACCAAATAGTTATAGAATAGAACTTTAGTTTTAAGAACTTAAGTAGATAACAAAAAATATGGATGTGGAAGTAGTTTTAAGAACTTGCCAACAACTAATATGTGTAAACGCACTTCAAATGTCTGTGCTCATATGCCTGCTGATCAACTTAAGCATGCTTGTGGCTCATTGTATTATCGCAGGCACACGATAGCAACAAGAACGAAAAAATTGACAATGAAGAATTTTTTGGTTTTATGATGGAGTTGACATCTGAAACGTTCAAATCAGTGAGCCAGAAATTAGTCCTCACTTTGGTGATTGCACCAACCATCGCAGTGTTCACAAAGAAACGTACTGAAGGATTTCCAGGCGTTGGAAAACTGGTGCAAAAACTCCCCTCTTCAGCATATGCTTCCATTATCACTCTTGCTGCTGTCCTGTTTCAGAGCTCTCACCAGCCGCTTCTTAAATGATAAGTTGAGACTCCTCTGTTTTCC

mRNA sequence

ATGAATTTGGTGAATCATTATTTGCCTTCGCCGGCTACGGCCGTGGATATCCCCGCCGCGTGTCGTTTTGTGTTTTGCCAAATGCCGTTTGGTCTAGGCGGCAACGAAAGGAAGGTCGCTTTATTCCAAGTTTCCTTCCGAACAGGAAAAGGAAATGTGTGGCAGAAGCAGTGCGGGCATCTCAATCTTCCATTCACTCGAAGAACCGATTTCAATCGCAGTTGGGGGCTGCTTTACGAGGTCTGTGATCTTCAATTGCCGTCGCTGCCGTCTAGTATGGGACAAGTCTTGGGGAGATTTGGAGGAAAAGATTGGAGGATTAAGAAGTTGAAGATGATATCAAACAGGATATTCGATAAGATCAAAAAACAATCAGATAAGGAGGAGCTGTCATTTGAAGAATTATATATTGCCACGTTACTTGTGTTCAATGATATTAATAAGCTGTTGTCTGGCTCACATCATGATCCGCCTTCAAGGGAACATTTCAAACAACTCATAACGGCACACGATAGCAACAAGAACGAAAAAATTGACAATGAAGAATTTTTTGGTTTTATGATGGAGTTGACATCTGAAACGTTCAAATCAGTGAGCCAGAAATTAGTCCTCACTTTGGTGATTGCACCAACCATCGCAGTGTTCACAAAGAAACGTACTGAAGGATTTCCAGGCGTTGGAAAACTGGTGCAAAAACTCCCCTCTTCAGCATATGCTTCCATTATCACTCTTGCTGCTGTCCTGTTTCAGAGCTCTCACCAGCCGCTTCTTAAATGATAAGTTGAGACTCCTCTGTTTTCC

Coding sequence (CDS)

ATGAATTTGGTGAATCATTATTTGCCTTCGCCGGCTACGGCCGTGGATATCCCCGCCGCGTGTCGTTTTGTGTTTTGCCAAATGCCGTTTGGTCTAGGCGGCAACGAAAGGAAGGTCGCTTTATTCCAAGTTTCCTTCCGAACAGGAAAAGGAAATGTGTGGCAGAAGCAGTGCGGGCATCTCAATCTTCCATTCACTCGAAGAACCGATTTCAATCGCAGTTGGGGGCTGCTTTACGAGGTCTGTGATCTTCAATTGCCGTCGCTGCCGTCTAGTATGGGACAAGTCTTGGGGAGATTTGGAGGAAAAGATTGGAGGATTAAGAAGTTGAAGATGATATCAAACAGGATATTCGATAAGATCAAAAAACAATCAGATAAGGAGGAGCTGTCATTTGAAGAATTATATATTGCCACGTTACTTGTGTTCAATGATATTAATAAGCTGTTGTCTGGCTCACATCATGATCCGCCTTCAAGGGAACATTTCAAACAACTCATAACGGCACACGATAGCAACAAGAACGAAAAAATTGACAATGAAGAATTTTTTGGTTTTATGATGGAGTTGACATCTGAAACGTTCAAATCAGTGAGCCAGAAATTAGTCCTCACTTTGGTGATTGCACCAACCATCGCAGTGTTCACAAAGAAACGTACTGAAGGATTTCCAGGCGTTGGAAAACTGGTGCAAAAACTCCCCTCTTCAGCATATGCTTCCATTATCACTCTTGCTGCTGTCCTGTTTCAGAGCTCTCACCAGCCGCTTCTTAAATGA

Protein sequence

MNLVNHYLPSPATAVDIPAACRFVFCQMPFGLGGNERKVALFQVSFRTGKGNVWQKQCGHLNLPFTRRTDFNRSWGLLYEVCDLQLPSLPSSMGQVLGRFGGKDWRIKKLKMISNRIFDKIKKQSDKEELSFEELYIATLLVFNDINKLLSGSHHDPPSREHFKQLITAHDSNKNEKIDNEEFFGFMMELTSETFKSVSQKLVLTLVIAPTIAVFTKKRTEGFPGVGKLVQKLPSSAYASIITLAAVLFQSSHQPLLK

Homology

[Close]

BLAST of CmaCh06G011560 vs. TAIR 10
Match: AT1G64850.1 (Calcium-binding EF hand family protein )

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-42
Identity = 83/159 (52.20%), Postives = 117/159 (73.58%), Query Frame = 0


Query: 93  MGQVLGRFGGKDWRIKKLKMISNRIFDKIKKQSDKEELSFEELYIATLLVFNDINKLLSG 152
           MGQV  +  GK+WR K+++ I +R+FD+ K Q+ +  L+FEELYIA LLV+NDINK L G
Sbjct: 1   MGQVFNKLRGKEWRHKQVQAICDRVFDRFKMQTGRANLTFEELYIAVLLVYNDINKRLPG 60

Query: 153 SHHDPPSREHFKQLITAHDSNKNEKIDNEEFFGFMMELTSETFKSVSQKLVLTLVIAPTI 212
            H DPPS++    ++T  D N + ++D EEF  F+ ++T+ETF  VSQ L++ L++APT+
Sbjct: 61  PHFDPPSKDLVNSIMTDCDINLDGELDREEFVKFIEQITAETFNVVSQGLIIALIVAPTV 120

Query: 213 AVFTKKRTEGFPGVGKLVQKLPSSAYASIITLAAVLFQS 252
           A+ TKK TEG PGVGK+VQKLP+S YAS++TLA +   S
Sbjct: 121 AIATKKATEGVPGVGKVVQKLPTSIYASLVTLAVMWVNS 159

[Close]

BLAST of CmaCh06G011560 vs. TAIR 10
Match: AT4G37445.1 (BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 4.2e-06
Identity = 35/156 (22.44%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 93  MGQVLGRFGGKDWRIKKLKMISNRIFDKIKKQSDKEELSFEELYIATLLVFNDINKLLSG 152
           MG  +G  G      + + M+   ++   K+ + K   +F++ ++A L +FN+ N  L G
Sbjct: 1   MGSSMGFLGKGVPPTQMMNMVMGSLY---KQFTQKAINNFDDFHVAVLDIFNNFNSALPG 60

Query: 153 SHHDPPSREHFKQLITAHDSNKNEKIDNEEFFGFMMELTSETFKSVSQKLVLTLVIAPTI 212
            H D P+ +  K         K+E+   + F  FM +    +   +    ++T +++P  
Sbjct: 61  RHFDFPTPDQIKVCFARWKEAKDEEEKKKLFIEFMSKSVKPS--KLDDVTMITGIVSPPA 120

Query: 213 AVFTKKRTEGFPGVGKLVQKLPSSAYASIITLAAVL 249
           A+  K+  E  P + KL++ +P   +   +T+ A++
Sbjct: 121 AMAAKRAGENVPQL-KLIKLIPDVIFVPTVTILAIV 150

The following BLAST results are available for this feature:

BLAST of CmaCh06G011560 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G011560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64850.1	1.2e-42	52.20	Calcium-binding EF hand family protein	[more]
AT4G37445.1	4.2e-06	22.44	BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family prote...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 106..203 e-value: 7.3E-6 score: 28.0
None	No IPR available	PANTHER	PTHR11639	S100 CALCIUM-BINDING PROTEIN	coord: 97..254
None	No IPR available	PANTHER	PTHR11639:SF133	CALCIUM-BINDING EF HAND PROTEIN	coord: 97..254
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 158..193 score: 10.050141
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 116..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G011560.1	CmaCh06G011560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0048306	calcium-dependent protein binding
molecular_function	GO:0005509	calcium ion binding