CmaCh06G011170 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G011170
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionhistone deacetylase complex subunit SAP18-like
LocationCma_Chr06: 7531832 .. 7534472 (+)
RNA-Seq ExpressionCmaCh06G011170
SyntenyCmaCh06G011170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGACAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCCAGAGCCCCTCATGCGCCTCCTCGTCCTCGCCTGGAGCCAGTCGATCGCGAGAAGGTATCTCTTTCTTTCCCTCTCATCTTTTACTTTTAGGGTTTCTGTCCGTTCCATCATCATGTCAGTTTTAATTTTGGTGTTCATTAGCTTGTTTTTTAATCCATCTTCATCTTCAATCCGTTTCTCGTTTCTTCGTTCTAGAACTCTATTCTGATGATGATTATTTGGAACTTTGAGTATTGCCTTATTATGGCCTAACGATTCTGTTTTACATCGATAGCTATGTAAACATAGATAGCGTCTTTGACTTTCTATACTGAGTCATTTTACTTCTCTTCTTGCAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGGTACGTTGTATTTTGATGCTGGCCTTTTGTTTTTATGAATTGTGTTACATTTTTGTGCAAAGTTGGAAGTGACTAAGTACCCGAAATCAAGTTTGTTTTCTAGATTAATCCATTAAGTATGAAATGAAATTCGTTGGACGCGGATTTTTTGTGTGAAATATTCATCTGTTTATGTCATTGTGGAGACCGATAGGATTTAGGCGTCGTATGAGAGGATAATTAAAGCAGGTTTCTCTGGTGTTGCGTTTCTACATTTAGGTTATGAGGCATATTATATAGCTTATTGATGATCTACTCTCCTGGTTCTAAGTAATGCCACTTATTGGATTAAGGAACAGTCATTATGAAATTGAAATTTGCGTTAATTGCAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTGTTTCTCATCCCTTTTCAATCTTTTCTCCTTGCACGCTTCGCATGACATAATTACGAATGATCTATATCATTTTGAGTTCATGTTTTTTTTTTGTTTAACGCCACACAATTTCCCTTACGGCTGTCCTTGAACTTATGTTGTGAGTTTGTGTGTTCATTGTTTTTTTCGGGGTGGGGTCACAGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTAGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTACCTCTCTCCATTTCTGTGCTCTCTTTCTTCCACTCTGACTTGAATGCACACTTTTATTTATGTTTTCCGGATGTTACATTGGAAATATTCATGATCTTTTGCCCTTTTTACTTCGTTGAGTTTTGATTATATGAAATTGAAGATGTAAGTTGATTAGTGGTAAAATCATCAGTTATTACCAAAACTCTGCTAGAAATTACCGAAAACCCATTAATTGTCCTAGAATTCGTCCCACTTAGTACTCAAAATCTAGCCTTAACATTACTGGAATTTGACCAGAAAAAAACTTGAATACTTTTACATGTTCAAGCAGCAAGGACCTAACAGCAAACAAACCTAGCCTAAAGAAATGCTTATTTACAAAAACAGTAATGTGTTGAACTACAAGAATGCCATAAATGTCAAAGGAAAAAAGACAACTGAACTGAGGGAGGGGATTGAAGTTATTATTTATTCTAGTCTAGATATCAATCCAATGAACTTAAAATTGTAGTGTTGAATTTGACTAAACTAAATCAGGAAATACAAAATAAATATTTCCCTATTGAGTATTATGTTGACAGATGTTATGTCTACGACTTGTTTGATCGTGACAATACTTTCAAACTGGAGTTTTCCCATAGTCTTAAGAAGTTTGTAGTGCTCAGTTTTGTGAAAAGGTGGGTAGTTCTGATTCTAGGACACGTATGAACACATCGAACGTGCTTAACTAGTGCCTGCGTTGCATATTCTTGCACGACTGTGATGGGCAACTGCGATGGATAAGCTGCCCATTTAATTTCATTTAGTGCTTTTAAAGGATCACTCGCTAATTACATTGTTGAATGAAATGACACAAAATCTTCTGTACTGAACACCCTTTCTTCATGCCCTGCCAGTTTGCATTTTCCTTCACTGCAAATACCTCGTATATCTGCTTTATATTTCACGCACTTATCGAATTAGATTGACCTATTTCTTAAAAGAACATAAAGTAATTTACGATTATAAACAAAGGTATGAATAAAGTGAACTATTATACGAGCCTCCAAGTAATACAGATTCTGTTTCTTTATGTGAAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGGTAAAACAAACATGGGTTTTGCTTTTTGCCATCTCAGTCCCTTCCTGTATTTCGTCTCATACTTGCACCACTTTTTCCCTGCAGATCGGAGATTACTTGGACGTGGCAATTATATAGGGAATTTTGTCGACCCGAAAAGGTCTCGTGATCCTTTTTCCTAGTAAAGAACCAGGCTTCAATGTTGTAATGTATAATTCCATAATGTGTTTGGAAATTGTTTACATGTTTGTGTCTTTTAGGTGGAATCATGA

mRNA sequence

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGACAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCCAGAGCCCCTCATGCGCCTCCTCGTCCTCGCCTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTAGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGGTGGAATCATGA

Coding sequence (CDS)

ATGCGGCCTCCGGGCCTCGCCTATAAACTGCAGAAGCTTCCAGAAGTAGCAGACAATACAGACACAGAAATGGCGGGAGAAGCAGAAGCACCGAGGAGAGCTTATGGCGCTCCTCCCAGAGCCCCTCATGCGCCTCCTCGTCCTCGCCTGGAGCCAGTCGATCGCGAGAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATATATACCTGGAAGGATGCTACTCTTCGCGAGCTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTATCTTTCGCTTTAGTGTATCCAGATAGACATGGCCGGTTTGTTGTGAGAGAGGTTGGGAAGACATTCTCGTTCGGAAATGGACGATCAGATGATAACTTAGCTTTGGCAGAACTTGGTTTTCAGGTGGAATCATGA

Protein sequence

MRPPGLAYKLQKLPEVADNTDTEMAGEAEAPRRAYGAPPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKTFSFGNGRSDDNLALAELGFQVES
Homology
[Close]
BLAST of CmaCh06G011170 vs. ExPASy Swiss-Prot
Match: O64644 (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.5e-43
Identity = 91/142 (64.08%), Postives = 108/142 (76.06%), Query Frame = 0 

Query: 28  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 87
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 88  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKT 147
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G + VREVG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

Query: 148 FSFGNGRS-DDNLALAELGFQV 163
            ++ N +  DD+  L+EL F++
Sbjct: 122 MAYPNRKQPDDSKTLSELPFEI 143

[Close]
BLAST of CmaCh06G011170 vs. ExPASy Swiss-Prot
Match: Q3T022 (Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-24
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 0 

Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQV 163
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]
BLAST of CmaCh06G011170 vs. ExPASy Swiss-Prot
Match: O00422 (Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-24
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 0 

Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQV 163
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]
BLAST of CmaCh06G011170 vs. ExPASy Swiss-Prot
Match: Q5RDT5 (Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-24
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 0 

Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQV 163
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]
BLAST of CmaCh06G011170 vs. ExPASy Swiss-Prot
Match: O55128 (Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-24
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 0 

Query: 51  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVA 110
           +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV 
Sbjct: 18  KPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVY 77

Query: 111 PEARRRNAKLSFALVYPD-RHGRFVVREVGKTFSFGNGRSDDNLALAELGFQV 163
           PEAR++    +FA+V+ D +   + V+E+G T S G   +DD++ L    FQ+
Sbjct: 78  PEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS-GRKGTDDSMTLQSQKFQI 129

[Close]
BLAST of CmaCh06G011170 vs. TAIR 10
Match: AT2G45640.1 (SIN3 associated polypeptide P18 )

HSP 1 Score: 175.6 bits (444), Expect = 3.2e-44
Identity = 91/142 (64.08%), Postives = 108/142 (76.06%), Query Frame = 0 

Query: 28  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 87
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 88  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKT 147
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G + VREVG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGET 121

Query: 148 FSFGNGRS-DDNLALAELGFQV 163
            ++ N +  DD+  L+EL F++
Sbjct: 122 MAYPNRKQPDDSKTLSELPFEI 143

[Close]
BLAST of CmaCh06G011170 vs. TAIR 10
Match: AT2G45640.2 (SIN3 associated polypeptide P18 )

HSP 1 Score: 165.6 bits (418), Expect = 3.3e-41
Identity = 88/142 (61.97%), Postives = 105/142 (73.94%), Query Frame = 0 

Query: 28  AEAPRRAYGAPPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVR 87
           AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVR
Sbjct: 2   AEAARRQGGGRPLPPPPRGVNQQPPRPKPEPVDREKTCPLLLRVFTKSGGHHTSEDYAVR 61

Query: 88  GKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRFVVREVGKT 147
           GKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LSFA VYP+  G +    VG+T
Sbjct: 62  GKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGY---NVGET 121

Query: 148 FSFGNGRS-DDNLALAELGFQV 163
            ++ N +  DD+  L+EL F++
Sbjct: 122 MAYPNRKQPDDSKTLSELPFEI 140

The following BLAST results are available for this feature:
BLAST of CmaCh06G011170 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O646444.5e-4364.08Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana OX=3702 GN=At2... [more]
Q3T0222.7e-2450.44Histone deacetylase complex subunit SAP18 OS=Bos taurus OX=9913 GN=SAP18 PE=2 SV... [more]
O004222.7e-2450.44Histone deacetylase complex subunit SAP18 OS=Homo sapiens OX=9606 GN=SAP18 PE=1 ... [more]
Q5RDT52.7e-2450.44Histone deacetylase complex subunit SAP18 OS=Pongo abelii OX=9601 GN=SAP18 PE=2 ... [more]
O551283.6e-2450.44Histone deacetylase complex subunit SAP18 OS=Mus musculus OX=10090 GN=Sap18 PE=1... [more]
BLAST of CmaCh06G011170 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G45640.13.2e-4464.08SIN3 associated polypeptide P18 [more]
AT2G45640.23.3e-4161.97SIN3 associated polypeptide P18 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010516Sin3 associated polypeptide p18PFAMPF06487SAP18coord: 52..150
e-value: 2.3E-33
score: 115.3
IPR010516Sin3 associated polypeptide p18PANTHERPTHR13082SAP18coord: 27..162
IPR042534Sin3 associated polypeptide p18 superfamilyGENE3D3.10.20.550ASAP complex, SAP18 subunitcoord: 43..163
e-value: 7.7E-39
score: 134.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availablePANTHERPTHR13082:SF4DEACETYLASE COMPLEX SUBUNIT SAP18, PUTATIVE-RELATEDcoord: 27..162

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G011170.1CmaCh06G011170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045892 negative regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003714 transcription corepressor activity