CmaCh06G011160 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G011160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	MADS-box protein SOC1-like
Location	Cma_Chr06: 7524448 .. 7530761 (+)
RNA-Seq Expression	CmaCh06G011160
Synteny	CmaCh06G011160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCACCTGCTTCCTTCCATGCATTTGCTAAGGCCCGTAAATTTATAATTAAGGGTCGGGTTGACTTTTAATATTAAAATTACAATTTTGACCTTTGAGATGGAGTTTAGTAGCATTTTGTTCTCTATTGAAGCACATTAAAAAATTGAGGGCATGTAAAAATGCTCGATATTGGGTAATTAATTGATAAATGGCATTGTGGTAATTACACGCTATTGGATCGAGTAATTAGCCACCAAGATTATGCACGCTAAACCTCTATTTTTGTAATACCCGAGTCTCAATGAGGTATTACCTGATTTTTAATATTGAGCCAAAAAAATTTAAATTTTACGAAAAGGGTTAGCGATGGAATTTCAAAATAGTATAAAAAAAAAAACAAAAGAAAATTTTTATCAATAAATAAATAAATAAATAAATATATATATATATATATATATATTAAAGCTTAGAAATATTATTCAAACTTTTTGCATGTTTAGAAATATTTTTAATTTAGCTAAATAAAAAGAAAGTCGGAGGGGGCAATTAGCAAATTCGGAAAAGTAGCAATGGGATGGTGGGCCCCCCCTCTCTCTCTTCCCTATCCCATAATTTTTATTATTTTTTATTATTTTTGACAAATCTTATAATTCTTATTTATTTATTATTATTATTTATTTAAGATCCCAACGGCTCTTCTATCCCATATGATTTGTTTCCATGTCAGCTGCTAGAGTTTTCTTCCTCTACGGCCGGGCCTATTGTATTTCGATTTTTCATCCATTTTTCAAACTATTATTGAATAATTACTTTTGTGGTTCTATAAATGAAAAAAAAAAAAAAAAAATTAGGATGACTTTTCAAACTATTATTGAATAATTAATTACTTTTTTAGTCTAAAGTTAAAAAGCCTACTAATGATACTTTTTTATGTCCTTCCAAATATTTACTTTTTTATCCTTCTTTATTTTTTTGGATTATGTGAAACAAAACTTCACTGGATAAAAGAATTTGCGAGTAATTTTTAACGATATGGAGATATGTATCGAATATTATTACCACGTTATCAGTATTCTTCTAAAATTCCAATGACTCTTTGGGTGTGTGGCGATTCAGTGGTTTCTATTATCATATCGACGAACACGACTTCTTATGAACAAGCTGGCCTCTGACTTATTTGGGTTAATTCTGTAAAGCTTAAGGCCAGTTGTAAATGGTGACGATAACTATTTTGTTAGATTGATCGTGTTAGCCTATAGACCAACCAAGCCTTCGGGATTGGTCTTTGGTTGAACCTTCGAGGGTTTTAGCTACCTTAACCTATAAGTACTTAAAATGGAGAAGTTGATAGATTATTAGAGTGACCTTTTAAGTAAATCTATAAAATAAAAAAGTTTTAATAATAAAAAAATTAAATTTATAATTTTAAAAGTTGAATGAGATTTTTTAAAATAAAATTTAAGTCCTAAATTAACTATTTGAGCGCTTGCCAAAAAAAGAAAGGGTTTTCATTATCTGAATATAAATATTCTTCAAAAAAATATCTCCCAATCGCCATTCATGAAAGTGACAACACGCTCCAAAATTTCACCTTTATTTTTCGCTCGTGTACACCACGCGCAATTGAAGCGAATAATTTTACCGGGAACTGACAACGACGGCGAACTCTTTTCTGCCTCTTCGATTCTGATTGGCTCTCCATTGTACGATCTGTACGGACTATGATGACGCGTTAAATACTTTATTTGTTTTTTAAAATATTATTTCTCTCTCTTCTGTTCATGAAATCTGATGTTTTCTCTCTCTTACTTGACTTTATTTCCCAACTTTTTAGTCTTTTTTCCATTTTAAAAATTATTTTTACCCAATCAAGAAATAAATTATATTCTTTTTCTAACAATAAAAATCTAAATTTTTTAATTAAAAAAAAAAAACATTACCTTCAAATTTGAAATTGGTTGGATTAACGATCAATAATTTTTAAAATAATTTTAATAATAGGATTGAAACTCTATTTTAAGATTGGCCCGACACCTAACTAAAAAAATGTCAACCAGTAAACCGACCCAAATTGTAAATTTTCTAAAAACTCAACCGAACCTAAATTGGAAAAAAATCTAACCAAGGTCATACCCCTACTCTATAAGATACTGTCCTTTTTTACTTTCCCTTTCGAGCTTCCCTTCAAAATTTTAAAACATATCTACTTTACATACTTTTATAAGAAATGTCATTATTATCTCCAATCTACGTGAGATCCCGTAATCCACAAACCCTTGGAACTATGATATTATATTATAAAAAATGTTTTGTTCTGTCTCCCACAAATTTAGTATCTCACAAAAAGAAAATAAAAGGAAATATATATATATATATATATATATATATATATATAAATTAATGAATTGTGGAAACGTGGGTCGGCTATGCCCCGTTTTTGGTGGTGGCAGTGAAAACACATCTATTTTATTTTATTTTTAAAAATTATATTTTAATAAATTCCCCCTTTTCTGTTTGGGGTTTTCAGATTCGACCCCAACTTTTCCTTATTTTGCTCTCTCTCCCCTTAAGCTCTCCCCAGCTAGGGTTTGATGGGTCATGCCTTGTTTGGCTTCAACTCAAACCCCAAAACTCTTCCAGTTTTCCATTAATTCCAGTTTACGTTTCGGCTTCATCCAAACACAATCTTATCTCCGGTAACCACCACACTCCGGTGAGATTTCTCCCTCCATTTTCTTGTCTGGTTTCATCGGATTCTCGTTTTTTAACCTTCTTTTCTGGTTCAGAACAATGGTGAGAGGAAAAACTCAGATGCGGCGGATCGAAAACGCCACGAATCGCCAAGTCACGTTTTCGAAGCGCCGCAATGGGTTGCTTAAGAAGGCCTTTGAGCTCTCAGTGCTCTGTGAAGCTGAAGTGGCCCTCATCATTTTCTCTTCTACTGGGAAGCTTTGTGAATTTGCTAGCTCAAGGTCCGGTATTATGCATTATTTACATTTCCCCCCCTCATTTTACTGATATTTACCAAAATGTTTGGTCTGGTTTGGTATGAGCTATGAGGGACCGTATTTGGACCCAATTTGTACCATGCAAGTACTGAAATAAGGGTCTATTTTTTCACTATTTCTCATAAATTTTAATCATTTAGATTATATTAATCTTAATCTTAATCTTAATCATCTACAAATGGACTAAGGTTTTCGTGGCGGAGATTAGAGAAAGGTCGAGAGCCGGGGTTTTAGTTAACCAAATATGTTTGGTAGGATTGTTCATATGACCCGAACATAGGAGTGTTCATATGACCTGAACAAAGGAGTGTTCATATGTCCTGATGATCTGAACCTAGGATTGTTCATATGACTTGATGATCCGAACATAGCATTGTTCATATGACTTGATTACTCGAACAAATGAGTGTTCATATGACCTAATGACCCAAATAATCTACACTACCAACTCTAAACGTACATGTTGAGTTGATTTAAATTCTTTTTTTGTTTGTTCGTTTAGATCGGGTTGGATTTTTTGAAGATTGAAAATTCGGTTTGGTTCATAGGTAGGAGCTGACCCGACCAATCCAATAATAGAACTCTTAACCCGACTCGACTTTGTTTTAAAGATTGCTATGAAAATTAAGAATATTTGATGTTTGTAACCGATGATAAATATTTTATATTTGAATTTTATGAGATTTTAGTTATTAAAAATAATTAAAAAAAAAGAATATTAATTAATTAATCTCATAAGGTTTAAATTTTAATTAAACATATATTATAATGTCAGTTGGTGTCGAGTCACCTTCATTTATATCACTATCTATATTTTATAATATGCTGAAAATATTGGATAATGTTGGTAGTCTATGTATGGTTTGGTTAAAAGTTATGGTTTTATTTTATGATCTGTGCATGTTTATGTCACGTTTATCTTTATTTTAAAATTAATTATATGAAATTTAGTTTTTATTATAAGTTCGTCATGTTTTTAATTTTATTTTTAAATTAATTTAATAATTACGTAATTTCTTATGCTTCAGCATGCAGGCCACAGTGGAGCGATTTCAAAGGCACACAAGGGTAACCCATCATCTTGAACGTTCTTTACCTCATCACCATGATCAAGCTGATCAGGTTTGTTCTCGTTTTAAAATGTTGATTTTGAACGTCGAGGTCTCGATTTTAATGAAAATATTGATAGAAATAGGTACGTAGAAAACAATTAAGGTTTAGAATTCTATAATCGTGAAATTTACGTGAGATGGAGATTCGAATTTCTGATATTTTAGTCGAGAGTAGTTTAGATTCTTAGGAATGTGAGTTTGATCTGTACGAGGCAGCTCACGTACTGTTCGAGAGTCGAGCCCGAACACCGGGACTTAGGTCAACACTTATTTGAACCTGATTTCATTTTATATGCCGCTCTTAGTGTAGTCCCTTTGGATAACTATTTGGTTTTTGAAAATTATAAACACTAATTAACAAAAATATCTCTAAAATTTGTAATTTATCTTAAAAAATATTTTTAAAATTTCAATAATACCTTTAATCTTTCAAAATAATTTTAAAAAGATCTTCGTAGTTAGTTTTTTTTATGGAAATCATTAATATTTGAGTTCAAAAATACCTTTGAAAATTTTAAAAAATAAAATTCAATAATAAAATTTTGATAAAAAAAAAAATTTAATTTTTTTTTTTAGTTTTAAGGGTATTTTTTAATTTTTTTTTAAAAGTTTAAGGGTATTATTGAAACTTTTGAAAGTTTAAAGTATTTTTGAAAGGATATTTTTATTAATTTTTAAAATGTATAAATATTTAAAAAAATTGGTTAATAATTAAAATGGGAGCTTTATATTTTATTTTCTGTTTGGTTTAGGCTGCAAATTTGTTGAAGGAGATAGAGTCACTTGAAGATTCAAAGAGGTAGAGGAGAATAAGAAGCTACTATTATCTCATTGGTTTGACTTTGGCTGTTTGACTTTGACTTACAAATTTTGACTTTTAATCTACTAGGAAATTGTTGGGACAAGGTTTGGGATCAAGCTCTTATGAAGAACTTCAACAAATAGAACAGCAGCTACAAAGCAGCTTAGCCCATGTTCGCGCTACAAAGGTTCTAAATCTAAACTATATGTTTTCAGCATTTTTTTTAATTAACCCACGACGTTCGATTCTCGAGATTCATGGGTCGTCCCGAGAAGATCTTCGATTTGTACCTTCACAACAAATTGTTGTGCAGCTGTCTCTCACCCGTATATGAAAATCATTCAATTCATGTTTCCTCCCATATGGGTCTATCGAAAATTTTCCGTGCCCTTACCCCATACTTCAGCTTGGTCCATTGTTGTATGGTTTAATCAATTACAGTTCCTCCCGCCAATGAAGCCTTCATATCTCCCGATCATCCATCGTGATCAACATTATGTTCTTTTCTAGTGCACTCGCTTTATATCTCTTAAGCTCAAGCATTTACTCGTCTTGGGGCTAATGTGGAGTCAGTCAGGATTCATAGAACAAAGGGAGTGGAAGCATTCGGAAACATGGTCTTCTTTTTGTCTCGTTTCAAATATTGTAGTAACTTAGATTATATAAACTCAAATCCTATACCTTATTTTGATGTTCCGAACATTTGAATCCCGTGCTCATTAAAACCGATGAATCGTATAGTTTAAAAGAGTTGTATAGTAGGATCGGTTGCTCGATAAGATTGATTAAGGTGGATTTGTACTAAAAAATCACTCTATTTTCATTTTTTGATTTCAGCATGAGGCTTACAAGGAACAGATTGATCAACTGAAAGAAAAGGTTAGTAAATGAAAGCTTCAACTTCCAATGGATTATGATTTTTTCCCTAATTTTTTTATTTTAAAAAAACAGGAGAAATATTTGGCAGCTGAAAATGAAAAGCTAGCTAAAAAGGTGAGTTGTTTACTGTTTTTTTTTTTTTTTTTGAGCTCGAGATGACGGTATATATCTTATTTATTGCTATATTCGAATATTTAATAACGGATTTTAGGGTTATAAGACAGATGAAGTGAAATGCATTTTCTGATTCAGTATTTGGTTCAACTCGAGCCTCGTCAATCACTGACTCAAGTACGAGAAGTTTCACCGTATCTCGAAACCAGCTCGACTTTCGACGTTGAAACGGATTTGTTCATCGGGCCACCAAAGCCGAGATCGAAGTGACTCCATTATTTTTTTTTTTTTTTTTGTTCTTATAAAATTATATCCAAACTTCATAATAATTTCTCAAGGAAAAAGAGCCTTTGTTTTCCCTACTAATACATTTTCACATTATCATTAATAATAAGAATATTGTAAATATTTAAC

mRNA sequence

ATGGAGCACCTGCTTCCTTCCATGCATTTGCTAAGGCCCTTTACGTTTCGGCTTCATCCAAACACAATCTTATCTCCGGTAACCACCACACTCCGAACAATGGTGAGAGGAAAAACTCAGATGCGGCGGATCGAAAACGCCACGAATCGCCAAGTCACGTTTTCGAAGCGCCGCAATGGGTTGCTTAAGAAGGCCTTTGAGCTCTCAGTGCTCTGTGAAGCTGAAGTGGCCCTCATCATTTTCTCTTCTACTGGGAAGCTTTGTGAATTTGCTAGCTCAAGCATGCAGGCCACAGTGGAGCGATTTCAAAGGCACACAAGGGTAACCCATCATCTTGAACGTTCTTTACCTCATCACCATGATCAAGCTGATCAGGCTGCAAATTTGTTGAAGGAGATAGAGTCACTTGAAGATTCAAAGAGGAAATTGTTGGGACAAGGTTTGGGATCAAGCTCTTATGAAGAACTTCAACAAATAGAACAGCAGCTACAAAGCAGCTTAGCCCATGTTCGCGCTACAAAGCATGAGGCTTACAAGGAACAGATTGATCAACTGAAAGAAAAGGAGAAATATTTGGCAGCTGAAAATGAAAAGCTAGCTAAAAAGTATTTGGTTCAACTCGAGCCTCGTCAATCACTGACTCAAGTACGAGAAGTTTCACCGTATCTCGAAACCAGCTCGACTTTCGACGTTGAAACGGATTTGTTCATCGGGCCACCAAAGCCGAGATCGAAGTGACTCCATTATTTTTTTTTTTTTTTTTGTTCTTATAAAATTATATCCAAACTTCATAATAATTTCTCAAGGAAAAAGAGCCTTTGTTTTCCCTACTAATACATTTTCACATTATCATTAATAATAAGAATATTGTAAATATTTAAC

Coding sequence (CDS)

ATGGAGCACCTGCTTCCTTCCATGCATTTGCTAAGGCCCTTTACGTTTCGGCTTCATCCAAACACAATCTTATCTCCGGTAACCACCACACTCCGAACAATGGTGAGAGGAAAAACTCAGATGCGGCGGATCGAAAACGCCACGAATCGCCAAGTCACGTTTTCGAAGCGCCGCAATGGGTTGCTTAAGAAGGCCTTTGAGCTCTCAGTGCTCTGTGAAGCTGAAGTGGCCCTCATCATTTTCTCTTCTACTGGGAAGCTTTGTGAATTTGCTAGCTCAAGCATGCAGGCCACAGTGGAGCGATTTCAAAGGCACACAAGGGTAACCCATCATCTTGAACGTTCTTTACCTCATCACCATGATCAAGCTGATCAGGCTGCAAATTTGTTGAAGGAGATAGAGTCACTTGAAGATTCAAAGAGGAAATTGTTGGGACAAGGTTTGGGATCAAGCTCTTATGAAGAACTTCAACAAATAGAACAGCAGCTACAAAGCAGCTTAGCCCATGTTCGCGCTACAAAGCATGAGGCTTACAAGGAACAGATTGATCAACTGAAAGAAAAGGAGAAATATTTGGCAGCTGAAAATGAAAAGCTAGCTAAAAAGTATTTGGTTCAACTCGAGCCTCGTCAATCACTGACTCAAGTACGAGAAGTTTCACCGTATCTCGAAACCAGCTCGACTTTCGACGTTGAAACGGATTTGTTCATCGGGCCACCAAAGCCGAGATCGAAGTGA

Protein sequence

MEHLLPSMHLLRPFTFRLHPNTILSPVTTTLRTMVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASSSMQATVERFQRHTRVTHHLERSLPHHHDQADQAANLLKEIESLEDSKRKLLGQGLGSSSYEELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQSLTQVREVSPYLETSSTFDVETDLFIGPPKPRSK

Homology

[Close]

BLAST of CmaCh06G011160 vs. ExPASy Swiss-Prot
Match: O64645 (MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.7e-51
Identity = 125/212 (58.96%), Postives = 158/212 (74.53%), Query Frame = 0


Query: 34  MVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASS 93
           MVRGKTQM+RIENAT+RQVTFSKRRNGLLKKAFELSVLC+AEV+LIIFS  GKL EFASS
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 94  SMQATVERFQRHTR----VTHHLERSLPHHHDQADQAANLLKEIESLEDSKRKLLGQGLG 153
           +MQ T++R+ RHT+         E ++ H      +AAN++K+IE LE SKRKLLG+G+G
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQH---LKYEAANMMKKIEQLEASKRKLLGEGIG 120

Query: 154 SSSYEELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKY-LVQLE 213
           + S EELQQIEQQL+ S+  +RA K + +KEQI+QLK+KEK LAAENEKL++K+   + E
Sbjct: 121 TCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESE 180

Query: 214 PRQSLTQVREVSPYLETSSTFDVETDLFIGPP 241
              +  Q        E+S + +VET LFIG P
Sbjct: 181 VWSNKNQESTGRGDEESSPSSEVETQLFIGLP 209

[Close]

BLAST of CmaCh06G011160 vs. ExPASy Swiss-Prot
Match: O82743 (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-46
Identity = 109/210 (51.90%), Postives = 147/210 (70.00%), Query Frame = 0


Query: 34  MVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASS 93
           MVRGKT+M+RIENAT+RQVTFSKRRNGLLKKAFELSVLC+AEVAL+IFS   KL EF+SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 94  SMQATVERFQRHTRVTHHLERSLPHHHDQADQAANLLKEIESLEDSKRKLLGQGLGSSSY 153
           S+ AT+ER+QR  +   +  +   +     D+ + L K+IE LE SKRKLLG+G+ + S 
Sbjct: 61  SIAATIERYQRRIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSI 120

Query: 154 EELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQSL 213
           EELQQ+E QL  SL+ +RA K++  +E+I++LK +E+ L  EN+ L +K+L       + 
Sbjct: 121 EELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIAS 180

Query: 214 TQVREVSPYLETSSTFDVETDLFIGPPKPR 244
           +Q    S  +      +VET LFIGPP+ R
Sbjct: 181 SQSTLSSSEVNIDDNMEVETGLFIGPPETR 210

[Close]

BLAST of CmaCh06G011160 vs. ExPASy Swiss-Prot
Match: Q9FIS1 (MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-43
Identity = 107/208 (51.44%), Postives = 145/208 (69.71%), Query Frame = 0


Query: 34  MVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASS 93
           MVRGK +M++IENAT+RQVTFSKRRNGLLKKA+ELSVLC+A+++LIIFS  G+L EF+SS
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 94  SMQATVERFQRHTRVTHHLERSLPHHHDQADQ-AANLLKEIESLEDSKRKLLGQGLGSSS 153
            MQ T+ER++++T+           H  Q  Q A++++ +IE LE  KRKLLGQG+ S S
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query: 154 YEELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQS 213
            EELQ+I+ QLQ SL  VR  K + +KEQ+++LK KEK L  EN KL +K ++   P + 
Sbjct: 121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVI--NPWRG 180

Query: 214 LTQVREVSPYLETSSTFDVETDLFIGPP 241
            +  ++   Y       +VETDLFIG P
Sbjct: 181 SSTDQQQEKYKVIDLNLEVETDLFIGLP 206

[Close]

BLAST of CmaCh06G011160 vs. ExPASy Swiss-Prot
Match: Q38838 (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=1 SV=2)

HSP 1 Score: 176.4 bits (446), Expect = 3.9e-43
Identity = 110/214 (51.40%), Postives = 148/214 (69.16%), Query Frame = 0


Query: 34  MVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEF-AS 93
           MVRGKT+M+RIENAT+RQVTFSKRRNGLLKKAFELSVLC+AEVALIIFS  GKL EF +S
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 94  SSMQATVERFQRHTRVTHHLERSLPHHHDQADQAANLLKEIESLEDSKRKLLGQGLGSSS 153
           SS+  TVER+Q+  +      +   +     D+   L ++IE LE S RK++G+GL +SS
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASS 120

Query: 154 YEELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQS 213
            EELQQ+E QL  SL  +RA K++  +E+ ++LKEKE+ L AEN+ L +K   +++ R  
Sbjct: 121 IEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEK--CEMQGRGI 180

Query: 214 LTQVREVSPYLE---TSSTFDVETDLFIGPPKPR 244
           + ++   S   E     +  +V TDLFIGPP+ R
Sbjct: 181 IGRISSSSSTSELDIDDNEMEVVTDLFIGPPETR 212

[Close]

BLAST of CmaCh06G011160 vs. ExPASy Swiss-Prot
Match: Q9XJ60 (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS50 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.9e-38
Identity = 105/211 (49.76%), Postives = 137/211 (64.93%), Query Frame = 0


Query: 34  MVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASS 93
           MVRGKTQM+RIEN T+RQVTFSKRRNGLLKKAFELSVLC+AEVALI+FS  GKL EFAS+
Sbjct: 1   MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 94  SMQATVERFQRHTRVTHHLERSLPHHHDQADQAANLLKEIESLEDSKRKLLGQGLGSSSY 153
           S Q T+ER++ +T+     +            A  L K++E+LE  KRKLLG+ L   S 
Sbjct: 61  STQKTIERYRTYTKENIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSI 120

Query: 154 EELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQSL 213
           EEL  +E +L+ SL  +R  K +  +EQ+ +L+EKE  L  +NE+L +K   Q      L
Sbjct: 121 EELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAPL 180

Query: 214 T-QVREVSP---YLETSSTFDVETDLFIGPP 241
           T +  + +P      T+   DVET+LFIG P
Sbjct: 181 TVRAEDENPDRNINTTNDNMDVETELFIGLP 211

[Close]

BLAST of CmaCh06G011160 vs. TAIR 10
Match: AT2G45660.1 (AGAMOUS-like 20 )

HSP 1 Score: 202.2 bits (513), Expect = 4.8e-52
Identity = 125/212 (58.96%), Postives = 158/212 (74.53%), Query Frame = 0


Query: 34  MVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASS 93
           MVRGKTQM+RIENAT+RQVTFSKRRNGLLKKAFELSVLC+AEV+LIIFS  GKL EFASS
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 94  SMQATVERFQRHTR----VTHHLERSLPHHHDQADQAANLLKEIESLEDSKRKLLGQGLG 153
           +MQ T++R+ RHT+         E ++ H      +AAN++K+IE LE SKRKLLG+G+G
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQH---LKYEAANMMKKIEQLEASKRKLLGEGIG 120

Query: 154 SSSYEELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKY-LVQLE 213
           + S EELQQIEQQL+ S+  +RA K + +KEQI+QLK+KEK LAAENEKL++K+   + E
Sbjct: 121 TCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESE 180

Query: 214 PRQSLTQVREVSPYLETSSTFDVETDLFIGPP 241
              +  Q        E+S + +VET LFIG P
Sbjct: 181 VWSNKNQESTGRGDEESSPSSEVETQLFIGLP 209

[Close]

BLAST of CmaCh06G011160 vs. TAIR 10
Match: AT4G22950.1 (AGAMOUS-like 19 )

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-47
Identity = 109/210 (51.90%), Postives = 147/210 (70.00%), Query Frame = 0


Query: 34  MVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASS 93
           MVRGKT+M+RIENAT+RQVTFSKRRNGLLKKAFELSVLC+AEVAL+IFS   KL EF+SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 94  SMQATVERFQRHTRVTHHLERSLPHHHDQADQAANLLKEIESLEDSKRKLLGQGLGSSSY 153
           S+ AT+ER+QR  +   +  +   +     D+ + L K+IE LE SKRKLLG+G+ + S 
Sbjct: 61  SIAATIERYQRRIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSI 120

Query: 154 EELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQSL 213
           EELQQ+E QL  SL+ +RA K++  +E+I++LK +E+ L  EN+ L +K+L       + 
Sbjct: 121 EELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIAS 180

Query: 214 TQVREVSPYLETSSTFDVETDLFIGPPKPR 244
           +Q    S  +      +VET LFIGPP+ R
Sbjct: 181 SQSTLSSSEVNIDDNMEVETGLFIGPPETR 210

[Close]

BLAST of CmaCh06G011160 vs. TAIR 10
Match: AT5G62165.1 (AGAMOUS-like 42 )

HSP 1 Score: 177.9 bits (450), Expect = 9.6e-45
Identity = 107/208 (51.44%), Postives = 145/208 (69.71%), Query Frame = 0


Query: 34  MVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASS 93
           MVRGK +M++IENAT+RQVTFSKRRNGLLKKA+ELSVLC+A+++LIIFS  G+L EF+SS
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 94  SMQATVERFQRHTRVTHHLERSLPHHHDQADQ-AANLLKEIESLEDSKRKLLGQGLGSSS 153
            MQ T+ER++++T+           H  Q  Q A++++ +IE LE  KRKLLGQG+ S S
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query: 154 YEELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQS 213
            EELQ+I+ QLQ SL  VR  K + +KEQ+++LK KEK L  EN KL +K ++   P + 
Sbjct: 121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVI--NPWRG 180

Query: 214 LTQVREVSPYLETSSTFDVETDLFIGPP 241
            +  ++   Y       +VETDLFIG P
Sbjct: 181 SSTDQQQEKYKVIDLNLEVETDLFIGLP 206

[Close]

BLAST of CmaCh06G011160 vs. TAIR 10
Match: AT5G62165.2 (AGAMOUS-like 42 )

HSP 1 Score: 177.9 bits (450), Expect = 9.6e-45
Identity = 107/208 (51.44%), Postives = 145/208 (69.71%), Query Frame = 0


Query: 34  MVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASS 93
           MVRGK +M++IENAT+RQVTFSKRRNGLLKKA+ELSVLC+A+++LIIFS  G+L EF+SS
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 94  SMQATVERFQRHTRVTHHLERSLPHHHDQADQ-AANLLKEIESLEDSKRKLLGQGLGSSS 153
            MQ T+ER++++T+           H  Q  Q A++++ +IE LE  KRKLLGQG+ S S
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query: 154 YEELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQS 213
            EELQ+I+ QLQ SL  VR  K + +KEQ+++LK KEK L  EN KL +K ++   P + 
Sbjct: 121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVI--NPWRG 180

Query: 214 LTQVREVSPYLETSSTFDVETDLFIGPP 241
            +  ++   Y       +VETDLFIG P
Sbjct: 181 SSTDQQQEKYKVIDLNLEVETDLFIGLP 206

[Close]

BLAST of CmaCh06G011160 vs. TAIR 10
Match: AT5G62165.3 (AGAMOUS-like 42 )

HSP 1 Score: 177.9 bits (450), Expect = 9.6e-45
Identity = 107/208 (51.44%), Postives = 145/208 (69.71%), Query Frame = 0


Query: 34  MVRGKTQMRRIENATNRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSTGKLCEFASS 93
           MVRGK +M++IENAT+RQVTFSKRRNGLLKKA+ELSVLC+A+++LIIFS  G+L EF+SS
Sbjct: 1   MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 94  SMQATVERFQRHTRVTHHLERSLPHHHDQADQ-AANLLKEIESLEDSKRKLLGQGLGSSS 153
            MQ T+ER++++T+           H  Q  Q A++++ +IE LE  KRKLLGQG+ S S
Sbjct: 61  DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query: 154 YEELQQIEQQLQSSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKYLVQLEPRQS 213
            EELQ+I+ QLQ SL  VR  K + +KEQ+++LK KEK L  EN KL +K ++   P + 
Sbjct: 121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVI--NPWRG 180

Query: 214 LTQVREVSPYLETSSTFDVETDLFIGPP 241
            +  ++   Y       +VETDLFIG P
Sbjct: 181 SSTDQQQEKYKVIDLNLEVETDLFIGLP 206

The following BLAST results are available for this feature:

BLAST of CmaCh06G011160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64645	6.7e-51	58.96	MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1	[more]
O82743	1.7e-46	51.90	Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=...	[more]
Q9FIS1	1.4e-43	51.44	MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1	[more]
Q38838	3.9e-43	51.40	Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana OX=3702 GN=AGL14 PE=...	[more]
Q9XJ60	2.9e-38	49.76	MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD...	[more]

BLAST of CmaCh06G011160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45660.1	4.8e-52	58.96	AGAMOUS-like 20	[more]
AT4G22950.1	1.2e-47	51.90	AGAMOUS-like 19	[more]
AT5G62165.1	9.6e-45	51.44	AGAMOUS-like 42	[more]
AT5G62165.2	9.6e-45	51.44	AGAMOUS-like 42	[more]
AT5G62165.3	9.6e-45	51.44	AGAMOUS-like 42	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 175..202
None	No IPR available	COILS	Coil	Coil	coord: 119..146
None	No IPR available	PANTHER	PTHR11945:SF341	MADS-BOX PROTEIN SOC1	coord: 34..241
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 34..241
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 36..56 score: 66.39 coord: 56..71 score: 83.07 coord: 71..92 score: 62.79
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 34..93 e-value: 3.7E-39 score: 146.1
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 43..90 e-value: 7.7E-25 score: 86.2
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 36..90
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 34..94 score: 30.978004
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 121..202 e-value: 1.4E-21 score: 76.4
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 119..213 score: 13.440902
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 46..127 e-value: 3.5E-28 score: 99.5
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 36..110
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 36..110 e-value: 1.13221E-42 score: 137.684

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G011160.1	CmaCh06G011160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding