CmaCh06G010330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G010330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	arabinogalactan peptide 20-like
Location	Cma_Chr06: 6947629 .. 6948160 (+)
RNA-Seq Expression	CmaCh06G010330
Synteny	CmaCh06G010330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATTGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGTAATCTACGCATCTGATTTCTAAACTCCATCAGCTTTTGTGTCTGCTTTGTCCTTTTTGTTGATTGATGATGATGATGATGAATGTAGGTCTTTTCAAATTTTTTATTTGGAAGTGATTTGTTGACAGTTTTGTGTAAAATCAGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTTTGTGTAAAATCAGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGAGTTCTAGGATTGTAGCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGA

mRNA sequence

ATGGCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATTGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTTTGTGTAAAATCAGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGAGTTCTAGGATTGTAGCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGA

Coding sequence (CDS)

ATGGCGTCGTCCTCCGATTCTACTCCTACGGCCTTCTCTGGCTTCTTCACATGCTTCGCTCTCATCTTCTTCATTCTATTGCCACTCGTTCACGCGCACTCTTCGGCTTCTGCTCCCGCTCCCGCTCCCGCTAGCGACGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTTTGTGTAAAATCAGGGACCTCCATAGACCAGGGGATTGCGTACGTGTTGATGCTGATGGCGTTGGTTCTCACATATCTCATCCATCCTCTCGATGCATCTTCCTACCAATTTTTTCTGAATTGAGTTCTAGGATTGTAGCAATGTTGGCGCTGTTTTTCGGATTTTTGAAGATGCGGTTAGTGGATAAATCATGA

Protein sequence

MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVLCKIRDLHRPGDCVRVDADGVGSHISHPSSRCIFLPIFSELSSRIVAMLALFFGFLKMRLVDKS

Homology

[Close]

BLAST of CmaCh06G010330 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-10
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 12 FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL 66
          F G  T  ++IF ILLP+ HA S  +APAPAP SDGT+IDQGIAYVLML+ALVL
Sbjct: 7  FFGVSTIVSIIFAILLPMAHAQS--AAPAPAPTSDGTTIDQGIAYVLMLVALVL 58

[Close]

BLAST of CmaCh06G010330 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.4e-09
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 19 FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL 66
          F +I  ILLP+  +HS  S+PAPAP SDGTSIDQGIAYVLM++AL L
Sbjct: 14 FVIISVILLPIAQSHS--SSPAPAPTSDGTSIDQGIAYVLMMVALAL 58

[Close]

BLAST of CmaCh06G010330 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-07
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 16 FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL 66
          F  F+ +F ++L L  A S   APAPAP SDGTSIDQGIAY+LM++ALVL
Sbjct: 10 FALFSFVFAVILSLAGAQS--LAPAPAPTSDGTSIDQGIAYLLMVVALVL 57

[Close]

BLAST of CmaCh06G010330 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.3e-07
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 19 FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL 66
          FA +F ++ P   A S   APAP+P SDGTSIDQGIAY+LM++ALVL
Sbjct: 13 FAFVFAVISPFAGAQS--LAPAPSPTSDGTSIDQGIAYLLMVVALVL 57

[Close]

BLAST of CmaCh06G010330 vs. ExPASy TrEMBL
Match: A0A6J1IAU1 (arabinogalactan peptide 16-like OS=Cucurbita maxima OX=3661 GN=LOC111473327 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.0e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLML 60
          MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLML
Sbjct: 1  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLML 60

Query: 61 MALVL 66
          MALVL
Sbjct: 61 MALVL 65

[Close]

BLAST of CmaCh06G010330 vs. ExPASy TrEMBL
Match: A0A6J1F1F2 (arabinogalactan peptide 20-like OS=Cucurbita moschata OX=3662 GN=LOC111441255 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.4e-24
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 2  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLM 61
          +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLM
Sbjct: 3  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLM 62

Query: 62 ALVL 66
          ALVL
Sbjct: 63 ALVL 66

[Close]

BLAST of CmaCh06G010330 vs. ExPASy TrEMBL
Match: A0A6J1D1D7 (arabinogalactan peptide 20-like OS=Momordica charantia OX=3673 GN=LOC111016381 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 6.5e-16
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 3  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMA 62
          +SS ST  AFS  FT FALIFFI+ PLV AHSSA APAPAPASDGTSIDQGIAYVLML+A
Sbjct: 2  ASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLA 61

Query: 63 LVL 66
          LVL
Sbjct: 62 LVL 64

[Close]

BLAST of CmaCh06G010330 vs. ExPASy TrEMBL
Match: A0A6J1E8M6 (arabinogalactan peptide 16-like OS=Cucurbita moschata OX=3662 GN=LOC111431859 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 3  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLML 62
          +SS+ST  AFSG FT F LI FIL PLV AHSS  A APAPAPASDGTSIDQG+AYVLML
Sbjct: 2  ASSNSTSRAFSGLFTFFTLILFILSPLVDAHSSVPAPAPAPAPASDGTSIDQGVAYVLML 61

Query: 63 MALVL 66
          +ALVL
Sbjct: 62 VALVL 66

[Close]

BLAST of CmaCh06G010330 vs. ExPASy TrEMBL
Match: A0A6J1IQM6 (arabinogalactan peptide 20-like OS=Cucurbita maxima OX=3661 GN=LOC111479127 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 3  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSS--ASAPAPAPASDGTSIDQGIAYVLML 62
          +SS+ST  AFSG FT F LI FIL PL+ AHSS  + APAPAPASDGTSIDQG+AYVLML
Sbjct: 2  ASSNSTFRAFSGLFTFFTLILFILSPLIDAHSSVPSPAPAPAPASDGTSIDQGVAYVLML 61

Query: 63 MALVL 66
          +ALVL
Sbjct: 62 VALVL 66

[Close]

BLAST of CmaCh06G010330 vs. NCBI nr
Match: XP_022974647.1 (arabinogalactan peptide 16-like [Cucurbita maxima] >XP_022975026.1 arabinogalactan peptide 16-like [Cucurbita maxima])

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLML 60
          MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLML
Sbjct: 1  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLML 60

Query: 61 MALVL 66
          MALVL
Sbjct: 61 MALVL 65

[Close]

BLAST of CmaCh06G010330 vs. NCBI nr
Match: XP_023538848.1 (arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-24
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 1  MASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLML 60
          MASSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLML
Sbjct: 1  MASSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLML 60

Query: 61 MALVL 66
          MALVL
Sbjct: 61 MALVL 65

[Close]

BLAST of CmaCh06G010330 vs. NCBI nr
Match: XP_022934029.1 (arabinogalactan peptide 20-like [Cucurbita moschata])

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-23
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 2  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLM 61
          +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLM
Sbjct: 3  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLM 62

Query: 62 ALVL 66
          ALVL
Sbjct: 63 ALVL 66

[Close]

BLAST of CmaCh06G010330 vs. NCBI nr
Match: KAG6597108.1 (Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028571.1 Arabinogalactan peptide 20 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.9 bits (276), Expect = 8.1e-21
Identity = 60/64 (93.75%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 2  ASSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLM 61
          +SSSDSTPTAFSGFFTCFALIFFIL PLVHAHSSAS  APAPASDGTSIDQGIAYVLMLM
Sbjct: 3  SSSSDSTPTAFSGFFTCFALIFFILSPLVHAHSSAS--APAPASDGTSIDQGIAYVLMLM 62

Query: 62 ALVL 66
          ALVL
Sbjct: 63 ALVL 64

[Close]

BLAST of CmaCh06G010330 vs. NCBI nr
Match: XP_022147463.1 (arabinogalactan peptide 20-like [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-15
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 0


Query: 3  SSSDSTPTAFSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMA 62
          +SS ST  AFS  FT FALIFFI+ PLV AHSSA APAPAPASDGTSIDQGIAYVLML+A
Sbjct: 2  ASSISTSRAFSSLFTAFALIFFIVSPLVDAHSSAPAPAPAPASDGTSIDQGIAYVLMLLA 61

Query: 63 LVL 66
          LVL
Sbjct: 62 LVL 64

[Close]

BLAST of CmaCh06G010330 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 12 FSGFFTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL 66
          F G  T  ++IF ILLP+ HA S  +APAPAP SDGT+IDQGIAYVLML+ALVL
Sbjct: 7  FFGVSTIVSIIFAILLPMAHAQS--AAPAPAPTSDGTTIDQGIAYVLMLVALVL 58

[Close]

BLAST of CmaCh06G010330 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-10
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 19 FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL 66
          F +I  ILLP+  +HS  S+PAPAP SDGTSIDQGIAYVLM++AL L
Sbjct: 14 FVIISVILLPIAQSHS--SSPAPAPTSDGTSIDQGIAYVLMMVALAL 58

[Close]

BLAST of CmaCh06G010330 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 57.4 bits (137), Expect = 9.9e-09
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 16 FTCFALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL 66
          F  F+ +F ++L L  A S   APAPAP SDGTSIDQGIAY+LM++ALVL
Sbjct: 10 FALFSFVFAVILSLAGAQS--LAPAPAPTSDGTSIDQGIAYLLMVVALVL 57

[Close]

BLAST of CmaCh06G010330 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-08
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 19 FALIFFILLPLVHAHSSASAPAPAPASDGTSIDQGIAYVLMLMALVL 66
          FA +F ++ P   A S   APAP+P SDGTSIDQGIAY+LM++ALVL
Sbjct: 13 FAFVFAVISPFAGAQS--LAPAPSPTSDGTSIDQGIAYLLMVVALVL 57

The following BLAST results are available for this feature:

BLAST of CmaCh06G010330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9T8	1.8e-10	68.52	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9FK16	7.4e-09	68.09	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]
O82337	1.4e-07	62.00	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	5.3e-07	61.70	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]

BLAST of CmaCh06G010330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IAU1	2.0e-25	100.00	arabinogalactan peptide 16-like OS=Cucurbita maxima OX=3661 GN=LOC111473327 PE=4...	[more]
A0A6J1F1F2	8.4e-24	96.88	arabinogalactan peptide 20-like OS=Cucurbita moschata OX=3662 GN=LOC111441255 PE...	[more]
A0A6J1D1D7	6.5e-16	80.95	arabinogalactan peptide 20-like OS=Momordica charantia OX=3673 GN=LOC111016381 P...	[more]
A0A6J1E8M6	2.7e-14	76.92	arabinogalactan peptide 16-like OS=Cucurbita moschata OX=3662 GN=LOC111431859 PE...	[more]
A0A6J1IQM6	1.8e-13	73.85	arabinogalactan peptide 20-like OS=Cucurbita maxima OX=3661 GN=LOC111479127 PE=4...	[more]

BLAST of CmaCh06G010330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974647.1	4.1e-25	100.00	arabinogalactan peptide 16-like [Cucurbita maxima] >XP_022975026.1 arabinogalact...	[more]
XP_023538848.1	2.1e-24	98.46	arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022934029.1	1.7e-23	96.88	arabinogalactan peptide 20-like [Cucurbita moschata]	[more]
KAG6597108.1	8.1e-21	93.75	Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_022147463.1	1.3e-15	80.95	arabinogalactan peptide 20-like [Momordica charantia]	[more]

BLAST of CmaCh06G010330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24105.1	1.2e-11	68.52	arabinogalactan protein 41	[more]
AT5G53250.1	5.2e-10	68.09	arabinogalactan protein 22	[more]
AT2G46330.1	9.9e-09	62.00	arabinogalactan protein 16	[more]
AT3G61640.1	3.8e-08	61.70	arabinogalactan protein 20	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 38..65 e-value: 7.2E-13 score: 48.2
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 11..66
None	No IPR available	PANTHER	PTHR33374:SF34	ARABINOGALACTAN PROTEIN 22	coord: 11..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G010330.1	CmaCh06G010330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane