CmaCh06G009850 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G009850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase II subunit 1-like
Location	Cma_Chr06: 6675288 .. 6677290 (+)
RNA-Seq Expression	CmaCh06G009850
Synteny	CmaCh06G009850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAATCTTCCTCGTTTTGGTCGTACATGGAACCGTTTCTCTTCCCTGCCCCGCCCTGCCACGGCCCCACGCTTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTTTTCATCTGCTCCGCCCACCGCCAATGTTCTTCAAACTTCCCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCTACATATAACCGTTACGACGGAGAACGGCGGAGCAGTGCCCAGGCTTCTCCTAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAACATAAGTATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGGTTAGTTCAATCACCATTAAAATACCTTATTTCATCCATTAGTAATTTATATATATACTTTTTTATTTTTTATATACAGATTCTGGTCACTTTTCTTAGAAAGAATATAATATAATAATTGTGCGCTACAAAATTAAACCTTTGACTCAAAATTTTATTTTATTTTTCTTAATTAATAATTGAGCTATACCTAGATGGCTTGAATATATATATATATATATATATATATTTTTTTTTGAGACCTCAGAGTTCACCTTCCTTTAAGACAACTCAGTTTCCATTCAGTTTCGCTATTCAATCGATATGGGACTCCTTCAATCCATCATGTCCCAACCAATGTTGGATCTCACATCTTCAGAGTCTAGCATTCTTGCTGACACTCGTTTATTTCTCCAACGATGTGGGAGCCCCCAATCCACCTTCTTTGGGGCCCAACGTCCTTGTAATCACACTGCCTCGTGTCCACCTCCTTCCAATTGATGTGGGTCTCCTCTCAATCCACCCCCTTCAAGGCCAAGTGTCTTTGACAACACACCGTTATCCACCCCCTTTCGAGGTTTAGCCTCCTTGTTAGCCCATCGCCAAGAATGTTTCGTTCTCCTACTCAACTCATGTCGGATTTAACAATTCACCCTCCTTTGGGGTCCAATGTTTTTACTGATATTCATTCCCTTCTCTCATCAATGTGAGACTCCCCCTCCAGACTCCCCCTCCCTCTCCCCAATTCACTACCTTCAGGCTCTAACATCCTTGGTGGCACACCGCCCTGTGTCCACCACCCTTTGGGGTTCAACCTTCTTACTGGCATATCACCCAGTGTCTGGCTCTGATGCCAACCGTAACAACACAAGCTTATACCTAGCAGATATTGTCCTCTTTCGACTTTTCATTTCGGACTTCCCCTCAAGGTTTTTAAAACGTATTTAGGTAGAAGTTTCACATCTTATAAAAAATGATCTTTTTTTTTTTTTGGGTCATAATGTTGTTAAAGGTATGATGTTATGTACGTATTCTTAAACAGGTCCAGCAGAAATCCGTCCTTTACCAGAAGACGACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAGCAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGGGAGAACGTAGGCGCTGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTTAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCAAGGCACTGA

mRNA sequence

ATGGCAAATCTTCCTCGTTTTGGTCGTACATGGAACCGTTTCTCTTCCCTGCCCCGCCCTGCCACGGCCCCACGCTTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTTTTCATCTGCTCCGCCCACCGCCAATGTTCTTCAAACTTCCCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCTACATATAACCGTTACGACGGAGAACGGCGGAGCAGTGCCCAGGCTTCTCCTAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAACATAAGTATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGATTCTGGTCCAGCAGAAATCCGTCCTTTACCAGAAGACGACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAGCAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGGGAGAACGTAGGCGCTGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTTAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCAAGGCACTGA

Coding sequence (CDS)

ATGGCAAATCTTCCTCGTTTTGGTCGTACATGGAACCGTTTCTCTTCCCTGCCCCGCCCTGCCACGGCCCCACGCTTTGATGTTCCGCCGCCGGCTGCCACGTCGGAGCCGGAAGTTTTTTCATCTGCTCCGCCCACCGCCAATGTTCTTCAAACTTCCCCTATTAAAGAAAGGTCTCCTCGAATCACTTCTCCGGTTAGGAAATATCCCTCGCCTCCTACTTCTCCCAAATATAGGGCGGCTGCCCCTAGCACTTCACCCCGCAAGCCACTATCTCCTCCTCCTACATATAACCGTTACGACGGAGAACGGCGGAGCAGTGCCCAGGCTTCTCCTAAAACGTTCAAAACTACCTATACCTCTCCGCCACGATCACCGGCGAAACATAAGTATTCCACCTCCACTGTCCAAGCACCACTCTCTCCTCTGGCTCTGCCTAGCTTGGAGAAGAGACATGAACCTGAGCCAATGGTTCGACCCAGGAGCCCACCGGAGATTCTGGTCCAGCAGAAATCCGTCCTTTACCAGAAGACGACTAGCGAGAAGCCTGCGAAAACCGACCACCGAGCATCGGAGTACAGCTCAGGCAAACCCCAGCAGAAGCAAACGCATCAGCAGCAAAGTGATGTTATAAACATCAAAGGGGAGAACGTAGGCGCTGTCATGCACATCACTCAATCATCTGATGCCACAGAAACCCACAAGAAAAAGCCAACCGTAAGCTACAGCAGCGAAAACGAGAAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGATTCAAACAAATCAAGCTCCAACATGCCTGGAAAATCGTTCATGAACAGCAATTTTCAAGGTGTTAACAACTCCATTCTCTACAATTCGTCTTTGAGCCACCGTGATCCAGGCCTGCACCTTGCTTTCACCAAGAAGCCCACCCATGCCGATTCTGTTCATGATTCAAGGCACTGA

Protein sequence

MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSPRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYTSPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKTTSEKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSLSHRDPGLHLAFTKKPTHADSVHDSRH

Homology

[Close]

BLAST of CmaCh06G009850 vs. ExPASy TrEMBL
Match: A0A6J1IEX0 (DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 9.6e-157
Identity = 304/326 (93.25%), Postives = 304/326 (93.25%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
           RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKTTS 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE  VQQKSVLYQKTTS
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE--VQQKSVLYQKTTS 180

Query: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
           EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240

Query: 241 SYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300
           SYSSENEK                    DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL
Sbjct: 241 SYSSENEK--------------------DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300

Query: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 327
           SHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]

BLAST of CmaCh06G009850 vs. ExPASy TrEMBL
Match: A0A6J1IHF4 (DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473598 PE=4 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 1.1e-155
Identity = 303/326 (92.94%), Postives = 303/326 (92.94%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
           RITSPVRKY SPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT
Sbjct: 61  RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKTTS 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE  VQQKSVLYQKTTS
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE--VQQKSVLYQKTTS 180

Query: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
           EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240

Query: 241 SYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300
           SYSSENEK                    DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL
Sbjct: 241 SYSSENEK--------------------DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300

Query: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 327
           SHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]

BLAST of CmaCh06G009850 vs. ExPASy TrEMBL
Match: A0A6J1G1L2 (DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=LOC111449836 PE=4 SV=1)

HSP 1 Score: 548.1 bits (1411), Expect = 2.4e-152
Identity = 297/326 (91.10%), Postives = 299/326 (91.72%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRP TAPR DVPPPAATSEPEV+ SAP TANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
           RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSA ASPKTFKTTYT
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKTTS 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEP+VRPRSPPE  VQQKSVLYQKTTS
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPE--VQQKSVLYQKTTS 180

Query: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
           EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240

Query: 241 SYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300
           SYSSENEK                    DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL
Sbjct: 241 SYSSENEK--------------------DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300

Query: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 327
           SHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]

BLAST of CmaCh06G009850 vs. ExPASy TrEMBL
Match: A0A5A7TZ60 (Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00750 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.4e-102
Identity = 220/331 (66.47%), Postives = 254/331 (76.74%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPP-AATSEPEVFSSAPPTANVLQTSPIKERS 60
           M+NLPRFGRTWNRFSSLPRP+TA R +  P   A +EPEVF SA PT N LQTSP+K+R+
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTY 120
           PR++SPV+K+PSPP+SPKY  A  + SPRKPLSPP TYNR+DGERR+SA  SPKTFK TY
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 TSPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKT 180
            SPP SP K K+ST +TV APLSPLALP  E R EPE  +RPRSPPEI  +QK +LYQ T
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEI--EQKKILYQTT 180

Query: 181 TSEKPAKTDHR-ASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKK 240
           T+EKP KTD+R   +Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E  KK
Sbjct: 181 TTEKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKK 240

Query: 241 KPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILY 300
           KP+V  S ENE                    + +NKS+SN PGKSFMNSNFQGVNNSILY
Sbjct: 241 KPSVGQSKENE--------------------EKTNKSNSNFPGKSFMNSNFQGVNNSILY 300

Query: 301 NSSLSHRDPGLHLAF-TKKPTHADSVHDSRH 327
           NSSLSHRDPGLHLA+ +K P H DS+H+SRH
Sbjct: 301 NSSLSHRDPGLHLAYSSKNPKHGDSIHESRH 309

[Close]

BLAST of CmaCh06G009850 vs. ExPASy TrEMBL
Match: A0A1S3AVJ6 (microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=3656 GN=LOC103483157 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 1.4e-102
Identity = 220/331 (66.47%), Postives = 254/331 (76.74%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPP-AATSEPEVFSSAPPTANVLQTSPIKERS 60
           M+NLPRFGRTWNRFSSLPRP+TA R +  P   A +EPEVF SA PT N LQTSP+K+R+
Sbjct: 1   MSNLPRFGRTWNRFSSLPRPSTAARQETQPAFTAATEPEVFPSAVPTTNTLQTSPVKQRT 60

Query: 61  PRITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTY 120
           PR++SPV+K+PSPP+SPKY  A  + SPRKPLSPP TYNR+DGERR+SA  SPKTFK TY
Sbjct: 61  PRLSSPVKKFPSPPSSPKYSGATGTISPRKPLSPPSTYNRHDGERRTSATTSPKTFKPTY 120

Query: 121 TSPPRSPAKHKYST-STVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKT 180
            SPP SP K K+ST +TV APLSPLALP  E R EPE  +RPRSPPEI  +QK +LYQ T
Sbjct: 121 ISPPPSPPKPKHSTAATVVAPLSPLALPRSEVRREPERSIRPRSPPEI--EQKKILYQTT 180

Query: 181 TSEKPAKTDHR-ASEYSSGKPQQKQTHQQ-QSDVINIKGENVGAVMHITQSSDATETHKK 240
           T+EKP KTD+R   +Y + KPQQKQ HQQ QSDVINIKG+NVGAVMHITQSSD +E  KK
Sbjct: 181 TTEKPTKTDYRQTDQYGTSKPQQKQHHQQLQSDVINIKGDNVGAVMHITQSSDGSEILKK 240

Query: 241 KPTVSYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILY 300
           KP+V  S ENE                    + +NKS+SN PGKSFMNSNFQGVNNSILY
Sbjct: 241 KPSVGQSKENE--------------------EKTNKSNSNFPGKSFMNSNFQGVNNSILY 300

Query: 301 NSSLSHRDPGLHLAF-TKKPTHADSVHDSRH 327
           NSSLSHRDPGLHLA+ +K P H DS+H+SRH
Sbjct: 301 NSSLSHRDPGLHLAYSSKNPKHGDSIHESRH 309

[Close]

BLAST of CmaCh06G009850 vs. NCBI nr
Match: XP_022974814.1 (DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_022974815.1 DNA-directed RNA polymerase II subunit 1-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 562.8 bits (1449), Expect = 2.0e-156
Identity = 304/326 (93.25%), Postives = 304/326 (93.25%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
           RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKTTS 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE  VQQKSVLYQKTTS
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE--VQQKSVLYQKTTS 180

Query: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
           EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240

Query: 241 SYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300
           SYSSENEK                    DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL
Sbjct: 241 SYSSENEK--------------------DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300

Query: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 327
           SHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]

BLAST of CmaCh06G009850 vs. NCBI nr
Match: XP_022974813.1 (DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 559.3 bits (1440), Expect = 2.2e-155
Identity = 303/326 (92.94%), Postives = 303/326 (92.94%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
           RITSPVRKY SPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT
Sbjct: 61  RITSPVRKYHSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKTTS 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE  VQQKSVLYQKTTS
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE--VQQKSVLYQKTTS 180

Query: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
           EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240

Query: 241 SYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300
           SYSSENEK                    DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL
Sbjct: 241 SYSSENEK--------------------DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300

Query: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 327
           SHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]

BLAST of CmaCh06G009850 vs. NCBI nr
Match: KAG6597058.1 (hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 549.7 bits (1415), Expect = 1.7e-152
Identity = 298/326 (91.41%), Postives = 299/326 (91.72%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRP TAPR DVPPPAATSEPEV+ SAP TANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
           RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSA ASPKTFKTTYT
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKTTS 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE  VQQKSVLYQKTTS
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPE--VQQKSVLYQKTTS 180

Query: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
           EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240

Query: 241 SYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300
           SYSSENEK                    DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL
Sbjct: 241 SYSSENEK--------------------DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300

Query: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 327
           SHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]

BLAST of CmaCh06G009850 vs. NCBI nr
Match: XP_022945677.1 (DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata])

HSP 1 Score: 548.1 bits (1411), Expect = 5.0e-152
Identity = 297/326 (91.10%), Postives = 299/326 (91.72%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRP TAPR DVPPPAATSEPEV+ SAP TANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAATSEPEVYPSAPRTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
           RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSA ASPKTFKTTYT
Sbjct: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSALASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKTTS 180
           SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEP+VRPRSPPE  VQQKSVLYQKTTS
Sbjct: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPVVRPRSPPE--VQQKSVLYQKTTS 180

Query: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
           EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240

Query: 241 SYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300
           SYSSENEK                    DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL
Sbjct: 241 SYSSENEK--------------------DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300

Query: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 327
           SHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]

BLAST of CmaCh06G009850 vs. NCBI nr
Match: XP_023538835.1 (proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 539.3 bits (1388), Expect = 2.3e-149
Identity = 292/326 (89.57%), Postives = 295/326 (90.49%), Query Frame = 0


Query: 1   MANLPRFGRTWNRFSSLPRPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSP 60
           MANLPRFGRTWNRFSSLPRP TAPR DVPPPAA SEPEV+   P TANVLQTSPIKERSP
Sbjct: 1   MANLPRFGRTWNRFSSLPRPGTAPRLDVPPPAAASEPEVYPPPPRTANVLQTSPIKERSP 60

Query: 61  RITSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYT 120
           RI SPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERR+SA ASPKTFKTTYT
Sbjct: 61  RIPSPVRKYPSPPTSPKYRAAAPSTSPRKPLSPPPTYNRYDGERRTSALASPKTFKTTYT 120

Query: 121 SPPRSPAKHKYSTSTVQAPLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKTTS 180
           SPPRSPAKHKYSTST+QAPLSPLALPSLEKRHEPEPMVRPRSPPE  VQQKSVLYQKTTS
Sbjct: 121 SPPRSPAKHKYSTSTLQAPLSPLALPSLEKRHEPEPMVRPRSPPE--VQQKSVLYQKTTS 180

Query: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240
           EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV
Sbjct: 181 EKPAKTDHRASEYSSGKPQQKQTHQQQSDVINIKGENVGAVMHITQSSDATETHKKKPTV 240

Query: 241 SYSSENEKDSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300
           SYSSENEK                    DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL
Sbjct: 241 SYSSENEK--------------------DSNKSSSNMPGKSFMNSNFQGVNNSILYNSSL 300

Query: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 327
           SHRDPGLHLAFTKKPTHADSVHDSRH
Sbjct: 301 SHRDPGLHLAFTKKPTHADSVHDSRH 304

[Close]

BLAST of CmaCh06G009850 vs. TAIR 10
Match: AT2G46630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 110095 Blast hits to 59224 proteins in 2216 species: Archae - 177; Bacteria - 15429; Metazoa - 38345; Fungi - 18843; Plants - 13341; Viruses - 3084; Other Eukaryotes - 20876 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-14
Identity = 102/329 (31.00%), Postives = 145/329 (44.07%), Query Frame = 0


Query: 19  RPATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSPRITSPVRKYPSPPTSPKY 78
           +P T PR   PP +   E   + S PP+ ++   +P K  +P    P   Y SPP+  + 
Sbjct: 72  QPLTPPRQKAPPTSPPQERSPYHS-PPSRHMSPPTPPKAATPPPPPPRSSYTSPPSPKEV 131

Query: 79  RAAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYTSPPRSPAKHKYSTSTVQA 138
           + A P   PRKP SPP   +      RS+   S KT      SP  S    K  +  V  
Sbjct: 132 QEALP---PRKPNSPPSPAH----SSRSTTSESVKT-----RSPSESENHRKAPSPRV-- 191

Query: 139 PLSPLALPSLEKRHEPEPMVRPRSPPEILVQQKSVLYQKTTSEKPAKTDHRASEYSSGKP 198
            LSP +LP+     E E   +     E   Q     +           +H  ++  S   
Sbjct: 192 -LSPYSLPASLLHSERETTQKNILTAEKTSQTHETNHHNQNHNHDYNQNHNYNQNHSYNQ 251

Query: 199 QQ-------KQTHQQQSD----------VINIKGENVGAVMHITQSSDATE-----THKK 258
            Q       K+ H+Q S           VI I GEN GAVM I +S    +     TH  
Sbjct: 252 NQNHQGNNPKKMHRQPSSSDSENIMSTRVITIAGENKGAVMEILRSPQGNKTGGSGTHSS 311

Query: 259 KPTVSYSSENEK-DSNKSSSNMPGKSFMNSNFQDSNKSSSNMPGKSFMNSNFQGVNNSIL 318
           + +     +  +  S+ SSS+  G+    +     NK +SN+P K+FMNSN Q +NNSI+
Sbjct: 312 RVSHGTGEKGRRLQSSSSSSSDEGEGKKKTTKNVPNKGNSNLPMKAFMNSNVQMINNSIV 371

Query: 319 YNSSLSHRDPGLHLAFTKKPTHADSVHDS 325
           YNS+ SH DPG+HL  ++KP   +  H S
Sbjct: 372 YNSTASHHDPGVHLKISRKPGSDNGFHVS 384

[Close]

BLAST of CmaCh06G009850 vs. TAIR 10
Match: AT1G44191.1 (ECA1 gametogenesis related family protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.9e-04
Identity = 46/145 (31.72%), Postives = 59/145 (40.69%), Query Frame = 0


Query: 20  PATAPRFDVPPPAATSEPEVFSSAPPTANVLQTSPIKERSPRITSPVRKYPSPPTSPKYR 79
           P   P+   PPP  +S P +   +PP        P  ++SP    P    PSP  SP   
Sbjct: 109 PPRTPKKSPPPPKPSSPPPIPKKSPPPPKPSSPPPTPKKSPPPPKPSSPPPSPKKSPP-- 168

Query: 80  AAAPSTSPRKPLSPPPTYNRYDGERRSSAQASPKTFKTTYTSPPRSPAKHKYSTSTVQAP 139
              PS SP KP +PPPT        + S  + PK      +SPP SP K         +P
Sbjct: 169 PPKPSPSPPKPSTPPPT-------PKKSPPSPPKP-----SSPPPSPKKSPPPPKPSPSP 228

Query: 140 LSPLALPSLEKRHEPEPMVRPRSPP 165
             P   P   K+  P P  +P  PP
Sbjct: 229 PKPSTPPPTPKKSPPPP--KPSQPP 237

The following BLAST results are available for this feature:

BLAST of CmaCh06G009850 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G009850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEX0	9.6e-157	93.25	DNA-directed RNA polymerase II subunit 1-like isoform X2 OS=Cucurbita maxima OX=...	[more]
A0A6J1IHF4	1.1e-155	92.94	DNA-directed RNA polymerase II subunit 1-like isoform X1 OS=Cucurbita maxima OX=...	[more]
A0A6J1G1L2	2.4e-152	91.10	DNA-directed RNA polymerase II subunit 1-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A5A7TZ60	1.4e-102	66.47	Microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo var. m...	[more]
A0A1S3AVJ6	1.4e-102	66.47	microtubule-associated protein RP/EB family member 1-like OS=Cucumis melo OX=365...	[more]

BLAST of CmaCh06G009850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974814.1	2.0e-156	93.25	DNA-directed RNA polymerase II subunit 1-like isoform X2 [Cucurbita maxima] >XP_...	[more]
XP_022974813.1	2.2e-155	92.94	DNA-directed RNA polymerase II subunit 1-like isoform X1 [Cucurbita maxima]	[more]
KAG6597058.1	1.7e-152	91.41	hypothetical protein SDJN03_10238, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022945677.1	5.0e-152	91.10	DNA-directed RNA polymerase II subunit 1-like [Cucurbita moschata]	[more]
XP_023538835.1	2.3e-149	89.57	proline-rich extensin-like protein EPR1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh06G009850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46630.1	1.1e-14	31.00	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXP...	[more]
AT1G44191.1	2.9e-04	31.72	ECA1 gametogenesis related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 195..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..288
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..326
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 307..326
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..288
None	No IPR available	PANTHER	PTHR33472:SF1	EXTENSIN-RELATED	coord: 14..322
None	No IPR available	PANTHER	PTHR33472	OS01G0106600 PROTEIN	coord: 14..322

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009850.1	CmaCh06G009850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032774	RNA biosynthetic process
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity