CmaCh06G009780 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G009780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	Cma_Chr06: 6634987 .. 6638217 (-)
RNA-Seq Expression	CmaCh06G009780
Synteny	CmaCh06G009780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCCGACCCATCTATTCTAGATCAGTCTAAAAATTATACGGGTAAGGACTCTGTGATCGTAGGAAACGGTGCATCTCAACCCATTACCCACACCGGTACTCTTTCTCATGTTCCAAATATTCACTTATTAGATGTCTTGGTTGTCCCTCACCTCACTAAAAATCTTCTTTCCATAAGTAAATTAACGTCTGATTTTCCTCTCTCCGTTACATTTACTAATAATCTTATTACTATCTAGAATCATCAAACAGGAAGGGTGGTGGCAACCGGTAAAAGAGATGGAGGGCTATATGTGCTGGAGCGCGGCAACTCTGCTTTTATTTCAGCCCTTAGAAACAAATCTTTACGTGCTTCATATGATTTATGGCATGCTCGTCTGGGCCATATGAATCATTTTGTTATTTCTTTTTTAAATAGAAAAGATCATCTTTCTCTTACGTCTTTATTGCCTTCTCCATTATTATGTAATACTTGTCAGCTTGCGAAAAGTCATCGATTGCCTTATTCCCGCAATGAGCGTAGGTCGTCTCATATGTTAGATCTTATTCATTGTGATCTTTGGGGTCCTCCCGTCAAATCAAATTCGGGTTTTCTTTATTATGCTATTTTTATTGATGATTATTCTCGATTCACTTGGTTTTACCCTTTAAAATTTAAATCTGATTTTTTTTGATATTTTTTTTCAATTTAAAAAATTTGTGAAAAATCAATATTCTTCTCGTATCAAGGTATTTCAAAGCGAGGGTGGTACCGAATTTACTAGTACTTGTTTCAAAACTCATTTACGTAATTCTAGCATCCACCGTCAACTCTCTTGTCCATATACATCTGCTCAAAATGGTCGTGATGAGAGNNNNNNNNNNAGCATCCACCGTCAACTCTCTTGTCCATATACATCTGCTCAAAATGGTCGTGATGAGAGAAAACATCGTCATGTGACTGAGACTGGCTTGACCCTTCTCTTTCACTTTCATCTTTCTCCTCGTTTTTGGGTTGACGCCTTCAGCACTGCAGCTTATATTATCAACCGGTTGCCTACTCCACTTCTTGGAGATAAGTCACCCTTTGAACTCCTTTATGGCTACACTCCACATTATGACAATTTTCATCCCTTTGGTTGTCGTGTTTATCCTTATTTGCGTGATTATATGCCTAACAAGCTTTCTGCCCACAACATTCATTGTATTTATTTTGGTTATAGTCCTGCTCATAAAGGGTTCCGCTGTCTTGATCCCGCCACCACTAAGCTATATATCACTTGCCATGCTCAATTTGATGAAACTCACTTTCCTGTTATCCCTAGCTCCTAGGCCCAACCTCTTTCCTCTATTCCTATTTCAAATTTCTTGGAACCACATCTTCATCATATTGATTCATCCCCCCACTGCTTCATCACCGCACATTCCTTGATCCAGTTCATCCCCATGTGATATCTGTTCTGACCTTGTAGATGAGTCTGTGCAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCAACGTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGGGCACTCATCCTATGATCACACGAGCCAAAACTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGGTATTTTGGCTCATCTGGACTTCTTTCTACTCTTCTTGCATCCACTGAGCCAAAAGAATTCAAATTTGCAGCTAAGAATCCTGCTTGGGTGGCTGCCATGGATGAAGAAATTCGAGTGTTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCCAACACCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATCCGTTGAGCATTTCAAGGCTTGTCTTGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGACTACACTGACACTTTCAGTCCGGTTGTCAAAGCTACCACTATCCGTGTTGTGCTTTTTATTGCAGTCACAAATAAATGGCCTCTTCGACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACTCTTATTGAACGTGTTCATATGGAACAACCTCCTGAGTATATTGATCCTCGATTTCCCACTCATGTTTGTCTATTAAAGAAAGCCCTTTATGGCTTAAAGCAAGCTCCTCGTGCTTGGTTTCAGCGTTTTAGCTCATTTCTTCTCACACTTGGGTTTTCTTGCAGTCGCGCTGACACGTTCCTTTTTGTCTTTCATTAGCAATCTAACATTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGACAACAACTCATCTCTTATTGACAGCTTTACTCGCAAGCTTCATTTTGAGTTTGCTACCAAAGATTTGGGTTCTCTAAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTTCTGATGGTCTCTTTATTAGTCAGTTAAAATATGCTCGAGATATTCTTATTCGTGCTCAGTTGCTCGATAGCAAACCAGTTCACACTCCCATGGTTGTTTCTCAGCACCTGATTACTGATGGTTCTCCTTTCTCTGACCCTACTCTCTACAAATCTCTTGTTGGCGCCCTTCAATACTTGACTATTACGCGTCCAGATATTGCCTATGTTGTCAATTCTGTCAGTCAATTCCTGCATGCCCCTACTGCAGATCACTTTCTTGCTGTCAAACGTATTCTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCGTCCATCCACTATTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCGTTTCTTGGAGTGCCAAAAAGCAACCTACTGTCTCAAGCTCCAGCTGTGAATCTGAGTATCGTGCTCTTGCCACAACTGCTGCTGAACTTTTTTGGGTTACGCATCTTTTGCATGACCTCAAGGTCTCTATTTCAGAGCAGCCCTTACTCTTATGTGACAACAAAAGTGCTATTTTTTTGAGCTCTAATCCTGTTTCTCACAAGCGGGCCAAACATGTTGAACTAGATTATCATTTTCTTCGAGAACTTGTTATCGTTGGCAAACTTCGCACACAATATTTACTCTCTCATCTTCAAGTTGTTGACATCTTTACAAAGAGTATTTCTCGACCTCTCTTTGAATTTTTCAGATCCAAGCTTTACGTTCGTTTAAATCCGACGCTCAGCTTGCAGGGGGTGTCAAGGATAGTTGA

mRNA sequence

ATGACTGCCGACCCATCTATTCTAGATCAGTCTAAAAATTATACGGGTAAGGACTCTGTGATCGTAGGAAACGGTGCATCTCAACCCATTACCCACACCGGTTCCACTTTGCCACCCTCGACTTCTAATTCAACGTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGGGCACTCATCCTATGATCACACGAGCCAAAACTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGCTAAGAATCCTGCTTGGGTGGCTGCCATGGATGAAGAAATTCGAGTGTTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCCAACACCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATCCGTTGAGCATTTCAAGGCTTGTCTTGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGACTACACTGACACTTTCAGTCCGGTTGTCAAAGCTACCACTATCCGTGTTGTGCTTTTTATTGCAGTCACAAATAAATGGCCTCTTCGACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACTCTTATTGAACGTGTTCATATGGAACAACCTCCTGAGTATATTGATCCTCGATTTCCCACTCATCAATCTAACATTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGACAACAACTCATCTCTTATTGACAGCTTTACTCGCAAGCTTCATTTTGAGTTTGCTACCAAAGATTTGGGTTCTCTAAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTTCTGATGGTCTCTTTATTAGTCAGTTAAAATATGCTCGAGATATTCTTATTCGTGCTCAGTTGCTCGATAGCAAACCAGTTCACACTCCCATGGTTGTTTCTCAGCACCTGATTACTGATGGTTCTCCTTTCTCTGACCCTACTCTCTACAAATCTCTTGTTGGCGCCCTTCAATACTTGACTATTACGCGTCCAGATATTGCCTATGTTGTCAATTCTGTCAGTCAATTCCTGCATGCCCCTACTGCAGATCACTTTCTTGCTGTCAAACGTATTCTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCGTCCATCCACTATTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCGTTTCTTGGAGTGCCAAAAAGCAACCTACTGTCTCAAGCTCCAGCTGTGAATCTGAGTATCGTGCTCTTGCCACAACTGCTGCTGAACTTTTTTGGGTTACGCATCTTTTGCATGACCTCAAGATCCAAGCTTTACGTTCGTTTAAATCCGACGCTCAGCTTGCAGGGGGTGTCAAGGATAGTTGA

Coding sequence (CDS)

ATGACTGCCGACCCATCTATTCTAGATCAGTCTAAAAATTATACGGGTAAGGACTCTGTGATCGTAGGAAACGGTGCATCTCAACCCATTACCCACACCGGTTCCACTTTGCCACCCTCGACTTCTAATTCAACGTCTATTGAACCTCCTGTTGATTTCTCTTCTTTGGGCACTCATCCTATGATCACACGAGCCAAAACTGGTATATTCAAGACTCGTCATCCAGCAAATCTTGCTAAGAATCCTGCTTGGGTGGCTGCCATGGATGAAGAAATTCGAGTGTTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCCAACACCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATCCGTTGAGCATTTCAAGGCTTGTCTTGTTGCCAAAGGTTATACTCAGGTTCCTGGTCTTGACTACACTGACACTTTCAGTCCGGTTGTCAAAGCTACCACTATCCGTGTTGTGCTTTTTATTGCAGTCACAAATAAATGGCCTCTTCGACAACTTGATGTCAAGAATGCTTTTCTCAATGGAACTCTTATTGAACGTGTTCATATGGAACAACCTCCTGAGTATATTGATCCTCGATTTCCCACTCATCAATCTAACATTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGACAACAACTCATCTCTTATTGACAGCTTTACTCGCAAGCTTCATTTTGAGTTTGCTACCAAAGATTTGGGTTCTCTAAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTTCTGATGGTCTCTTTATTAGTCAGTTAAAATATGCTCGAGATATTCTTATTCGTGCTCAGTTGCTCGATAGCAAACCAGTTCACACTCCCATGGTTGTTTCTCAGCACCTGATTACTGATGGTTCTCCTTTCTCTGACCCTACTCTCTACAAATCTCTTGTTGGCGCCCTTCAATACTTGACTATTACGCGTCCAGATATTGCCTATGTTGTCAATTCTGTCAGTCAATTCCTGCATGCCCCTACTGCAGATCACTTTCTTGCTGTCAAACGTATTCTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCGTCCATCCACTATTCCTAGTACGCTAGTCGCTTATTCGGATGCTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCGTTTCTTGGAGTGCCAAAAAGCAACCTACTGTCTCAAGCTCCAGCTGTGAATCTGAGTATCGTGCTCTTGCCACAACTGCTGCTGAACTTTTTTGGGTTACGCATCTTTTGCATGACCTCAAGATCCAAGCTTTACGTTCGTTTAAATCCGACGCTCAGCTTGCAGGGGGTGTCAAGGATAGTTGA

Protein sequence

MTADPSILDQSKNYTGKDSVIVGNGASQPITHTGSTLPPSTSNSTSIEPPVDFSSLGTHPMITRAKTGIFKTRHPANLAKNPAWVAAMDEEIRVLQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPEYIDPRFPTHQSNIIYLLLYVDDIIVTDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASPTSDGLFISQLKYARDILIRAQLLDSKPVHTPMVVSQHLITDGSPFSDPTLYKSLVGALQYLTITRPDIAYVVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSSSSCESEYRALATTAAELFWVTHLLHDLKIQALRSFKSDAQLAGGVKDS

Homology

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BLAST of CmaCh06G009780 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 3.7e-98
Identity = 214/522 (41.00%), Postives = 287/522 (54.98%), Query Frame = 0


Query: 5    PSILDQSKNYTGKDSVIVGNGASQPITHTGSTLPPSTSNSTSIEPPVDFSS--------- 64
            PS L QS +   + S    + +  P T   S+    T  S  I PP   +          
Sbjct: 868  PSQLAQSLSTPAQSS----SSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNNQAP 927

Query: 65   LGTHPMITRAKTGIFKTRHPANLA----------------KNPAWVAAMDEEIRVLQQND 124
            L TH M TRAK GI K     +LA                K+  W  AM  EI     N 
Sbjct: 928  LNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNH 987

Query: 125  TWTLV-PRPANTNIVGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPGLDYTDTFSPVVK 184
            TW LV P P++  IVG +W+F  KY  DGS+  +KA LVAKGY Q PGLDY +TFSPV+K
Sbjct: 988  TWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIK 1047

Query: 185  ATTIRVVLFIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPEYIDPRFPTH-------- 244
            +T+IR+VL +AV   WP+RQLDV NAFL GTL + V+M QPP +ID   P +        
Sbjct: 1048 STSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKAL 1107

Query: 245  -------------------------------------QSNIIYLLLYVDDIIVTDNNSSL 304
                                                   +I+Y+L+YVDDI++T N+ +L
Sbjct: 1108 YGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTL 1167

Query: 305  IDSFTRKLHFEFATKDLGSLSYFLGLEASPTSDGLFISQLKYARDILIRAQLLDSKPVHT 364
            + +    L   F+ KD   L YFLG+EA     GL +SQ +Y  D+L R  ++ +KPV T
Sbjct: 1168 LHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTT 1227

Query: 365  PMVVSQHL-ITDGSPFSDPTLYKSLVGALQYLTITRPDIAYVVNSVSQFLHAPTADHFLA 424
            PM  S  L +  G+  +DPT Y+ +VG+LQYL  TRPDI+Y VN +SQF+H PT +H  A
Sbjct: 1228 PMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQA 1287

Query: 425  VKRILRYVKGTLHFGLTFRPSTIPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWS 455
            +KRILRY+ GT + G+  +     S L AYSDADWAG  D   ST+GY +YLG++ +SWS
Sbjct: 1288 LKRILRYLAGTPNHGIFLKKGNTLS-LHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWS 1347

[Close]

BLAST of CmaCh06G009780 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 4.5e-96
Identity = 213/527 (40.42%), Postives = 287/527 (54.46%), Query Frame = 0


Query: 4    DPSILDQSKNYTGKDSVIVGNGASQPITHTGST------LPPSTSNSTSIEPPV------ 63
            +P+    S N   ++S +  +  S P   T ST       P S+S ST   PPV      
Sbjct: 839  NPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTSTPPLPPVLPAPPI 898

Query: 64   ----DFSSLGTHPMITRAKTGIFKTRHPANLA----------------KNPAWVAAMDEE 123
                  + + TH M TRAK GI K     + A                K+  W  AM  E
Sbjct: 899  IQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSE 958

Query: 124  IRVLQQNDTWTLV-PRPANTNIVGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPGLDYT 183
            I     N TW LV P P +  IVG +W+F  K+  DGS+  +KA LVAKGY Q PGLDY 
Sbjct: 959  INAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYA 1018

Query: 184  DTFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPEYIDPRFPTH 243
            +TFSPV+K+T+IR+VL +AV   WP+RQLDV NAFL GTL + V+M QPP ++D   P +
Sbjct: 1019 ETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDY 1078

Query: 244  ---------------------------------------------QSNIIYLLLYVDDII 303
                                                           +IIY+L+YVDDI+
Sbjct: 1079 VCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDIL 1138

Query: 304  VTDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASPTSDGLFISQLKYARDILIRAQL 363
            +T N++ L+      L   F+ K+   L YFLG+EA     GL +SQ +Y  D+L R  +
Sbjct: 1139 ITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNM 1198

Query: 364  LDSKPVHTPMVVSQHL-ITDGSPFSDPTLYKSLVGALQYLTITRPDIAYVVNSVSQFLHA 423
            L +KPV TPM  S  L +  G+   DPT Y+ +VG+LQYL  TRPD++Y VN +SQ++H 
Sbjct: 1199 LTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHM 1258

Query: 424  PTADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYSDADWAGCPDTRRSTSGYSIYL 452
            PT DH+ A+KR+LRY+ GT   G+  +     S L AYSDADWAG  D   ST+GY +YL
Sbjct: 1259 PTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLS-LHAYSDADWAGDTDDYVSTNGYIVYL 1318

[Close]

BLAST of CmaCh06G009780 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.7e-59
Identity = 115/226 (50.88%), Postives = 159/226 (70.35%), Query Frame = 0


Query: 215 IYLLLYVDDIIVTDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASPTSDGLFISQLK 274
           +YLLLYVDDI++T ++++L++    +L   F+ KDLG + YFLG++      GLF+SQ K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 275 YARDILIRAQLLDSKPVHTPMVVSQHLITDGSPFSDPTLYKSLVGALQYLTITRPDIAYV 334
           YA  IL  A +LD KP+ TP+ +  +     + + DP+ ++S+VGALQYLT+TRPDI+Y 
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120

Query: 335 VNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYSDADWAGCPDTR 394
           VN V Q +H PT   F  +KR+LRYVKGT+  GL    ++    + A+ D+DWAGC  TR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNS-KLNVQAFCDSDWAGCTSTR 180

Query: 395 RSTSGYSIYLGNNLVSWSAKKQPTVSSSSCESEYRALATTAAELFW 441
           RST+G+  +LG N++SWSAK+QPTVS SS E+EYRALA TAAEL W
Sbjct: 181 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh06G009780 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 227.6 bits (579), Expect = 2.8e-58
Identity = 131/419 (31.26%), Postives = 223/419 (53.22%), Query Frame = 0


Query: 83   AWVAAMDEEIRVLQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVEHFKACLVAKGYT 142
            +W  A++ E+   + N+TWT+  RP N NIV S+WVF +KY   G+   +KA LVA+G+T
Sbjct: 905  SWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFT 964

Query: 143  QVPGLDYTDTFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPP-- 202
            Q   +DY +TF+PV + ++ R +L + +     + Q+DVK AFLNGTL E ++M  P   
Sbjct: 965  QKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI 1024

Query: 203  -----------------------------------EYIDPR-----FPTHQSNI---IYL 262
                                               E+++       +   + NI   IY+
Sbjct: 1025 SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYV 1084

Query: 263  LLYVDDIIVTDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASPTSDGLFISQLKYAR 322
            LLYVDD+++   + + +++F R L  +F   DL  + +F+G+      D +++SQ  Y +
Sbjct: 1085 LLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVK 1144

Query: 323  DILIRAQLLDSKPVHTPM--VVSQHLITDGSPFSDPTLYKSLVGALQYLTI-TRPDIAYV 382
             IL +  + +   V TP+   ++  L+      + P   +SL+G L Y+ + TRPD+   
Sbjct: 1145 KILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPC--RSLIGCLMYIMLCTRPDLTTA 1204

Query: 383  VNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPS-TIPSTLVAYSDADWAGCPDT 442
            VN +S++     ++ +  +KR+LRY+KGT+   L F+ +    + ++ Y D+DWAG    
Sbjct: 1205 VNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEID 1264

Query: 443  RRSTSGYSIYLGN-NLVSWSAKKQPTVSSSSCESEYRALATTAAELFWVTHLLHDLKIQ 452
            R+ST+GY   + + NL+ W+ K+Q +V++SS E+EY AL     E  W+  LL  + I+
Sbjct: 1265 RKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIK 1321

[Close]

BLAST of CmaCh06G009780 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-55
Identity = 150/420 (35.71%), Postives = 206/420 (49.05%), Query Frame = 0


Query: 87   AMDEEIRVLQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPG 146
            AM EE+  LQ+N T+ LV  P     +  KWVF++K   D  +  +KA LV KG+ Q  G
Sbjct: 829  AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 888

Query: 147  LDYTDTFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQP------- 206
            +D+ + FSPVVK T+IR +L +A +    + QLDVK AFL+G L E ++MEQP       
Sbjct: 889  IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG 948

Query: 207  ------------------------------------PEYIDP-----RFPTHQSNIIYLL 266
                                                  Y DP     RF   ++N I LL
Sbjct: 949  KKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRF--SENNFIILL 1008

Query: 267  LYVDDIIVTDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLE--ASPTSDGLFISQLKYA 326
            LYVDD+++   +  LI      L   F  KDLG     LG++     TS  L++SQ KY 
Sbjct: 1009 LYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYI 1068

Query: 327  RDILIRAQLLDSKPVHTPMVVSQHLITDGSPFS-------DPTLYKSLVGALQY-LTITR 386
              +L R  + ++KPV TP+     L     P +           Y S VG+L Y +  TR
Sbjct: 1069 ERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTR 1128

Query: 387  PDIAYVVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYSDADWA 446
            PDIA+ V  VS+FL  P  +H+ AVK ILRY++GT    L F  S     L  Y+DAD A
Sbjct: 1129 PDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGS--DPILKGYTDADMA 1188

Query: 447  GCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSSSSCESEYRALATTAAELFWVTHLLHDL 449
            G  D R+S++GY        +SW +K Q  V+ S+ E+EY A   T  E+ W+   L +L
Sbjct: 1189 GDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQEL 1244

[Close]

BLAST of CmaCh06G009780 vs. ExPASy TrEMBL
Match: A0A438J6Z9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_186 PE=4 SV=1)

HSP 1 Score: 706.8 bits (1823), Expect = 5.9e-200
Identity = 394/632 (62.34%), Postives = 411/632 (65.03%), Query Frame = 0


Query: 1   MTADPSILDQSKNYTGKDSVIVGNGASQPITHT--------------------------- 60
           MT DPS LDQSKNY GKDSVIVGNGAS PITHT                           
Sbjct: 321 MTTDPSNLDQSKNYMGKDSVIVGNGASLPITHTGRMVATGKRDGGLYVLERGNSAFISVL 380

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 381 KNKSLRASYDLWHARLAHLRTSGIHHQLSCPYTPAQNGRAERKHRHVTETGLAILFHSHL 440

Query: 121 -------------------------GSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKT 180
                                    GS+LPP  S+  SIE   D  SSLG+HPMITRAK 
Sbjct: 441 SPRFWVDAFSTATYIINRLPTPLLGGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKA 500

Query: 181 GIFKTRHPANL------------------------AKNPAWVAAMDEEIRVLQQNDTWTL 240
           GIFKTRHPANL                        AKNPAW+AAMDEE++ LQQN TW L
Sbjct: 501 GIFKTRHPANLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWIL 560

Query: 241 VPRPANTNIVGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIR 300
           VPRP NTNIVGSKWVFR KYLPDGSVE  KA LVAKGYTQVPGLDYTDTFSPVVKATT+R
Sbjct: 561 VPRPVNTNIVGSKWVFRTKYLPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVR 620

Query: 301 VVLFIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPEYIDPRFPTH------------- 360
           VVL +AVTNKWPLRQLDVKNAFLNGTL E V+MEQPP YIDPRFPTH             
Sbjct: 621 VVLSLAVTNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQ 680

Query: 361 --------------------------------QSNIIYLLLYVDDIIVTDNNSSLIDSFT 420
                                           QS++IYLLLYVDDIIVT NN SL+DSFT
Sbjct: 681 APRAWFQRFTSFLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFT 740

Query: 421 RKLHFEFATKDLGSLSYFLGLEASPTSDGLFISQLKYARDILIRAQLLDSKPVHTPMVVS 451
           RKLH EFATKDLGSLSYFLGLEASPT DGLFISQLKYARDIL RAQLLDSKPVHTPMVVS
Sbjct: 741 RKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVS 800

[Close]

BLAST of CmaCh06G009780 vs. ExPASy TrEMBL
Match: A5C5R8 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_032383 PE=4 SV=1)

HSP 1 Score: 697.2 bits (1798), Expect = 4.7e-197
Identity = 367/503 (72.96%), Postives = 385/503 (76.54%), Query Frame = 0


Query: 28   QPITH----------TGSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKTGIFKTRHPA 87
            QP+ H          TG +LPP  S+  SIE   D  SSLG+HPMITRAK GIFKTRHPA
Sbjct: 628  QPVAHSTSWWLILLLTGFSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPA 687

Query: 88   NL------------------------AKNPAWVAAMDEEIRVLQQNDTWTLVPRPANTNI 147
            NL                        AKNPAW+AAMDEE++ LQQN TW LVPRP NTNI
Sbjct: 688  NLGVLGSSGLLSALLSSTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNI 747

Query: 148  VGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIRVVLFIAVTN 207
            VGSKWVFR KY PDGSVE  KA LVAKGYTQVPGLDYTDTFSPVVKATT+RVVL +AVTN
Sbjct: 748  VGSKWVFRTKYFPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTN 807

Query: 208  KWPLRQLDVKNAFLNGTLIERVHMEQPPEYIDPRFPTH---------------------- 267
            KWPLRQLDVKNAFLNGTL E V+MEQPP YIDPRFPTH                      
Sbjct: 808  KWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRF 867

Query: 268  -----------------------QSNIIYLLLYVDDIIVTDNNSSLIDSFTRKLHFEFAT 327
                                   QS++IYLLLYVDDIIVT NN SL+DSFTRKLH EFAT
Sbjct: 868  SSFLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFAT 927

Query: 328  KDLGSLSYFLGLEASPTSDGLFISQLKYARDILIRAQLLDSKPVHTPMVVSQHLITDGSP 387
            KDLGSLSYFLGLEASPT DGLFISQLKYARDIL RAQLLDSKPVHTPMVVSQHL   GSP
Sbjct: 928  KDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSP 987

Query: 388  FSDPTLYKSLVGALQYLTITRPDIAYVVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFG 447
            FS+PTLY+SLVGALQYLTITRPDIA+ VNSVSQFLHAPT DHFLAVKRILRYVKGTLHFG
Sbjct: 988  FSNPTLYRSLVGALQYLTITRPDIAHAVNSVSQFLHAPTIDHFLAVKRILRYVKGTLHFG 1047

Query: 448  LTFRPSTIPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSSSSCESE 451
            LTFRPSTIPS LVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVS SSCESE
Sbjct: 1048 LTFRPSTIPSALVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESE 1107

[Close]

BLAST of CmaCh06G009780 vs. ExPASy TrEMBL
Match: A0A438E763 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_452 PE=4 SV=1)

HSP 1 Score: 695.7 bits (1794), Expect = 1.4e-196
Identity = 363/487 (74.54%), Postives = 381/487 (78.23%), Query Frame = 0


Query: 34   GSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKTGIFKTRHPANL-------------- 93
            GS+LPP  S+  SIE   D  SSLG+HPMITRAK GIFKTRHPANL              
Sbjct: 629  GSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLA 688

Query: 94   ----------AKNPAWVAAMDEEIRVLQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGS 153
                      AKNPAW+AAMDEE++ LQQN TW LVPRP NTNIVGSKWVFR KYLPDGS
Sbjct: 689  STEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGS 748

Query: 154  VEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAFLNG 213
            VE  KA LVAKGYTQVPGLDYTDTFSPVVKATT+RVVL +A+TNKWPLRQLDVKNAFLNG
Sbjct: 749  VERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAITNKWPLRQLDVKNAFLNG 808

Query: 214  TLIERVHMEQPPEYIDPRFPTH-------------------------------------- 273
            TL E V+MEQPP YIDPRFPTH                                      
Sbjct: 809  TLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADT 868

Query: 274  -------QSNIIYLLLYVDDIIVTDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASP 333
                   QS++IYLLLYVDDIIVT NN SL+DSFTRKLH EFATKDLGSLSYFLGLEASP
Sbjct: 869  SLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLSYFLGLEASP 928

Query: 334  TSDGLFISQLKYARDILIRAQLLDSKPVHTPMVVSQHLITDGSPFSDPTLYKSLVGALQY 393
            T DGLFISQLKYARDIL RAQLLDSKPVHTPMVVSQHL   GSPFS+PTLY+SLVGALQY
Sbjct: 929  TPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQY 988

Query: 394  LTITRPDIAYVVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYS 451
            LTITRPDIA+ VNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPSTIPS LVAYS
Sbjct: 989  LTITRPDIAHAVNSVSQFLHAPTIDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYS 1048

[Close]

BLAST of CmaCh06G009780 vs. ExPASy TrEMBL
Match: A0A438E763 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_452 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-06
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1   MTADPSILDQSKNYTGKDSVIVGNGASQPITHTGSTLP 39
           MT DPS LDQSKNY GKDSVIVGNGAS PITHTG+  P
Sbjct: 321 MTTDPSNLDQSKNYMGKDSVIVGNGASLPITHTGTLSP 358

HSP 2 Score: 688.3 bits (1775), Expect = 2.2e-194
Identity = 360/487 (73.92%), Postives = 379/487 (77.82%), Query Frame = 0


Query: 34   GSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKTGIFKTRHPANL-------------- 93
            GS+LPP  S+  SIE   D  SSLG+HPMITRAK GIFKTRHPANL              
Sbjct: 643  GSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLA 702

Query: 94   ----------AKNPAWVAAMDEEIRVLQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGS 153
                      AKNPAW+AAMDEE++ LQQN TW LVPRP NTNIVGSKWVFR KYLPDGS
Sbjct: 703  STEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGS 762

Query: 154  VEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAFLNG 213
            VE  KA LVAKGYT VPGLDYTD FSPVVKATT+RVVL +AVTNKWPLRQLDVKNAFLNG
Sbjct: 763  VERLKARLVAKGYTHVPGLDYTDIFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNG 822

Query: 214  TLIERVHMEQPPEYIDPRFPTH-------------------------------------- 273
            TL E V+MEQPP YID RFPTH                                      
Sbjct: 823  TLTEHVYMEQPPGYIDHRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADT 882

Query: 274  -------QSNIIYLLLYVDDIIVTDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASP 333
                   QS++IYLLLYVDDIIVT NN SL+DSFTRKLH EFATKDLGSL+YFLGLEASP
Sbjct: 883  SLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLNYFLGLEASP 942

Query: 334  TSDGLFISQLKYARDILIRAQLLDSKPVHTPMVVSQHLITDGSPFSDPTLYKSLVGALQY 393
            T DGLFISQLKYARDIL RAQLLDSKPVHTPMVVSQHL   GSPFS+PTLY+SLVGALQY
Sbjct: 943  TPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQY 1002

Query: 394  LTITRPDIAYVVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYS 451
            LTITRPDIA+ VNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPSTIPS LVAYS
Sbjct: 1003 LTITRPDIAHAVNSVSQFLHAPTIDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYS 1062

[Close]

BLAST of CmaCh06G009780 vs. ExPASy TrEMBL
Match: A0A438IYJ9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2517 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 9.0e-07
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1   MTADPSILDQSKNYTGKDSVIVGNGASQPITHTGSTLP 39
           MT DPSILDQSKNY GKDS+IVGNGAS PITHTG+  P
Sbjct: 414 MTTDPSILDQSKNYMGKDSMIVGNGASLPITHTGTLSP 451

HSP 2 Score: 688.3 bits (1775), Expect = 2.2e-194
Identity = 354/464 (76.29%), Postives = 369/464 (79.53%), Query Frame = 0


Query: 56  LGTHPMITRAKTGIFKTRHPANL------------------------AKNPAWVAAMDEE 115
           LG+HPMITRAK GIFKTRHPANL                        AKNPAW+AAMDEE
Sbjct: 36  LGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEE 95

Query: 116 IRVLQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPGLDYTD 175
           ++ LQQN TWTLVPRP NTNIVGSKWVFR KYLPDGSVE  KA LVAKGYTQVPGLDYTD
Sbjct: 96  VQALQQNGTWTLVPRPVNTNIVGSKWVFRTKYLPDGSVERLKARLVAKGYTQVPGLDYTD 155

Query: 176 TFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPEYIDPRFPTH- 235
           TFSPVVKATT+RVVL +AVTNKWPLRQLDVKNAFLNGTL E V+MEQPP YIDPRFPTH 
Sbjct: 156 TFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHV 215

Query: 236 --------------------------------------------QSNIIYLLLYVDDIIV 295
                                                       QS++IYLLLYVDDIIV
Sbjct: 216 CLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIV 275

Query: 296 TDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASPTSDGLFISQLKYARDILIRAQLL 355
           T NN SL+DSFTRKLH EFATKDLGSLSYFLGLEASPT DGLFISQLKYARDIL RAQLL
Sbjct: 276 TGNNPSLLDSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLL 335

Query: 356 DSKPVHTPMVVSQHLITDGSPFSDPTLYKSLVGALQYLTITRPDIAYVVNSVSQFLHAPT 415
           DSKPVHTPMVVSQHL   GSPFS+PTLY+SLVGALQYLTITRPDIA+ VNSVSQFLHAPT
Sbjct: 336 DSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQYLTITRPDIAHAVNSVSQFLHAPT 395

Query: 416 ADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYSDADWAGCPDTRRSTSGYSIYLGN 451
            DHFLAVKRILRYVKGTLHFGLTFRPSTIPS LVAYSDADWAGCPDTRRSTSGYSIYLGN
Sbjct: 396 IDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYSDADWAGCPDTRRSTSGYSIYLGN 455

[Close]

BLAST of CmaCh06G009780 vs. NCBI nr
Match: RVX04731.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 706.8 bits (1823), Expect = 1.2e-199
Identity = 394/632 (62.34%), Postives = 411/632 (65.03%), Query Frame = 0


Query: 1   MTADPSILDQSKNYTGKDSVIVGNGASQPITHT--------------------------- 60
           MT DPS LDQSKNY GKDSVIVGNGAS PITHT                           
Sbjct: 321 MTTDPSNLDQSKNYMGKDSVIVGNGASLPITHTGRMVATGKRDGGLYVLERGNSAFISVL 380

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 381 KNKSLRASYDLWHARLAHLRTSGIHHQLSCPYTPAQNGRAERKHRHVTETGLAILFHSHL 440

Query: 121 -------------------------GSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKT 180
                                    GS+LPP  S+  SIE   D  SSLG+HPMITRAK 
Sbjct: 441 SPRFWVDAFSTATYIINRLPTPLLGGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKA 500

Query: 181 GIFKTRHPANL------------------------AKNPAWVAAMDEEIRVLQQNDTWTL 240
           GIFKTRHPANL                        AKNPAW+AAMDEE++ LQQN TW L
Sbjct: 501 GIFKTRHPANLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWIL 560

Query: 241 VPRPANTNIVGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIR 300
           VPRP NTNIVGSKWVFR KYLPDGSVE  KA LVAKGYTQVPGLDYTDTFSPVVKATT+R
Sbjct: 561 VPRPVNTNIVGSKWVFRTKYLPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVR 620

Query: 301 VVLFIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPEYIDPRFPTH------------- 360
           VVL +AVTNKWPLRQLDVKNAFLNGTL E V+MEQPP YIDPRFPTH             
Sbjct: 621 VVLSLAVTNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQ 680

Query: 361 --------------------------------QSNIIYLLLYVDDIIVTDNNSSLIDSFT 420
                                           QS++IYLLLYVDDIIVT NN SL+DSFT
Sbjct: 681 APRAWFQRFTSFLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFT 740

Query: 421 RKLHFEFATKDLGSLSYFLGLEASPTSDGLFISQLKYARDILIRAQLLDSKPVHTPMVVS 451
           RKLH EFATKDLGSLSYFLGLEASPT DGLFISQLKYARDIL RAQLLDSKPVHTPMVVS
Sbjct: 741 RKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVS 800

[Close]

BLAST of CmaCh06G009780 vs. NCBI nr
Match: CAN73071.1 (hypothetical protein VITISV_032383 [Vitis vinifera])

HSP 1 Score: 697.2 bits (1798), Expect = 9.7e-197
Identity = 367/503 (72.96%), Postives = 385/503 (76.54%), Query Frame = 0


Query: 28   QPITH----------TGSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKTGIFKTRHPA 87
            QP+ H          TG +LPP  S+  SIE   D  SSLG+HPMITRAK GIFKTRHPA
Sbjct: 628  QPVAHSTSWWLILLLTGFSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPA 687

Query: 88   NL------------------------AKNPAWVAAMDEEIRVLQQNDTWTLVPRPANTNI 147
            NL                        AKNPAW+AAMDEE++ LQQN TW LVPRP NTNI
Sbjct: 688  NLGVLGSSGLLSALLSSTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNI 747

Query: 148  VGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIRVVLFIAVTN 207
            VGSKWVFR KY PDGSVE  KA LVAKGYTQVPGLDYTDTFSPVVKATT+RVVL +AVTN
Sbjct: 748  VGSKWVFRTKYFPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTN 807

Query: 208  KWPLRQLDVKNAFLNGTLIERVHMEQPPEYIDPRFPTH---------------------- 267
            KWPLRQLDVKNAFLNGTL E V+MEQPP YIDPRFPTH                      
Sbjct: 808  KWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRF 867

Query: 268  -----------------------QSNIIYLLLYVDDIIVTDNNSSLIDSFTRKLHFEFAT 327
                                   QS++IYLLLYVDDIIVT NN SL+DSFTRKLH EFAT
Sbjct: 868  SSFLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFAT 927

Query: 328  KDLGSLSYFLGLEASPTSDGLFISQLKYARDILIRAQLLDSKPVHTPMVVSQHLITDGSP 387
            KDLGSLSYFLGLEASPT DGLFISQLKYARDIL RAQLLDSKPVHTPMVVSQHL   GSP
Sbjct: 928  KDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSP 987

Query: 388  FSDPTLYKSLVGALQYLTITRPDIAYVVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFG 447
            FS+PTLY+SLVGALQYLTITRPDIA+ VNSVSQFLHAPT DHFLAVKRILRYVKGTLHFG
Sbjct: 988  FSNPTLYRSLVGALQYLTITRPDIAHAVNSVSQFLHAPTIDHFLAVKRILRYVKGTLHFG 1047

Query: 448  LTFRPSTIPSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSSSSCESE 451
            LTFRPSTIPS LVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVS SSCESE
Sbjct: 1048 LTFRPSTIPSALVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESE 1107

[Close]

BLAST of CmaCh06G009780 vs. NCBI nr
Match: RVW43615.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 695.7 bits (1794), Expect = 2.8e-196
Identity = 363/487 (74.54%), Postives = 381/487 (78.23%), Query Frame = 0


Query: 34   GSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKTGIFKTRHPANL-------------- 93
            GS+LPP  S+  SIE   D  SSLG+HPMITRAK GIFKTRHPANL              
Sbjct: 629  GSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLA 688

Query: 94   ----------AKNPAWVAAMDEEIRVLQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGS 153
                      AKNPAW+AAMDEE++ LQQN TW LVPRP NTNIVGSKWVFR KYLPDGS
Sbjct: 689  STEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGS 748

Query: 154  VEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAFLNG 213
            VE  KA LVAKGYTQVPGLDYTDTFSPVVKATT+RVVL +A+TNKWPLRQLDVKNAFLNG
Sbjct: 749  VERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAITNKWPLRQLDVKNAFLNG 808

Query: 214  TLIERVHMEQPPEYIDPRFPTH-------------------------------------- 273
            TL E V+MEQPP YIDPRFPTH                                      
Sbjct: 809  TLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADT 868

Query: 274  -------QSNIIYLLLYVDDIIVTDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASP 333
                   QS++IYLLLYVDDIIVT NN SL+DSFTRKLH EFATKDLGSLSYFLGLEASP
Sbjct: 869  SLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLSYFLGLEASP 928

Query: 334  TSDGLFISQLKYARDILIRAQLLDSKPVHTPMVVSQHLITDGSPFSDPTLYKSLVGALQY 393
            T DGLFISQLKYARDIL RAQLLDSKPVHTPMVVSQHL   GSPFS+PTLY+SLVGALQY
Sbjct: 929  TPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQY 988

Query: 394  LTITRPDIAYVVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYS 451
            LTITRPDIA+ VNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPSTIPS LVAYS
Sbjct: 989  LTITRPDIAHAVNSVSQFLHAPTIDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYS 1048

[Close]

BLAST of CmaCh06G009780 vs. NCBI nr
Match: RVW43615.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 63.5 bits (153), Expect = 5.4e-06
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 1   MTADPSILDQSKNYTGKDSVIVGNGASQPITHTGSTLP 39
           MT DPS LDQSKNY GKDSVIVGNGAS PITHTG+  P
Sbjct: 321 MTTDPSNLDQSKNYMGKDSVIVGNGASLPITHTGTLSP 358

HSP 2 Score: 688.3 bits (1775), Expect = 4.5e-194
Identity = 354/464 (76.29%), Postives = 369/464 (79.53%), Query Frame = 0


Query: 56  LGTHPMITRAKTGIFKTRHPANL------------------------AKNPAWVAAMDEE 115
           LG+HPMITRAK GIFKTRHPANL                        AKNPAW+AAMDEE
Sbjct: 36  LGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEE 95

Query: 116 IRVLQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPGLDYTD 175
           ++ LQQN TWTLVPRP NTNIVGSKWVFR KYLPDGSVE  KA LVAKGYTQVPGLDYTD
Sbjct: 96  VQALQQNGTWTLVPRPVNTNIVGSKWVFRTKYLPDGSVERLKARLVAKGYTQVPGLDYTD 155

Query: 176 TFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAFLNGTLIERVHMEQPPEYIDPRFPTH- 235
           TFSPVVKATT+RVVL +AVTNKWPLRQLDVKNAFLNGTL E V+MEQPP YIDPRFPTH 
Sbjct: 156 TFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHV 215

Query: 236 --------------------------------------------QSNIIYLLLYVDDIIV 295
                                                       QS++IYLLLYVDDIIV
Sbjct: 216 CLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIV 275

Query: 296 TDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASPTSDGLFISQLKYARDILIRAQLL 355
           T NN SL+DSFTRKLH EFATKDLGSLSYFLGLEASPT DGLFISQLKYARDIL RAQLL
Sbjct: 276 TGNNPSLLDSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLL 335

Query: 356 DSKPVHTPMVVSQHLITDGSPFSDPTLYKSLVGALQYLTITRPDIAYVVNSVSQFLHAPT 415
           DSKPVHTPMVVSQHL   GSPFS+PTLY+SLVGALQYLTITRPDIA+ VNSVSQFLHAPT
Sbjct: 336 DSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQYLTITRPDIAHAVNSVSQFLHAPT 395

Query: 416 ADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYSDADWAGCPDTRRSTSGYSIYLGN 451
            DHFLAVKRILRYVKGTLHFGLTFRPSTIPS LVAYSDADWAGCPDTRRSTSGYSIYLGN
Sbjct: 396 IDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYSDADWAGCPDTRRSTSGYSIYLGN 455

[Close]

BLAST of CmaCh06G009780 vs. NCBI nr
Match: RVX01763.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 688.3 bits (1775), Expect = 4.5e-194
Identity = 360/487 (73.92%), Postives = 379/487 (77.82%), Query Frame = 0


Query: 34   GSTLPPSTSNSTSIEPPVD-FSSLGTHPMITRAKTGIFKTRHPANL-------------- 93
            GS+LPP  S+  SIE   D  SSLG+HPMITRAK GIFKTRHPANL              
Sbjct: 643  GSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLA 702

Query: 94   ----------AKNPAWVAAMDEEIRVLQQNDTWTLVPRPANTNIVGSKWVFRIKYLPDGS 153
                      AKNPAW+AAMDEE++ LQQN TW LVPRP NTNIVGSKWVFR KYLPDGS
Sbjct: 703  STEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGS 762

Query: 154  VEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAFLNG 213
            VE  KA LVAKGYT VPGLDYTD FSPVVKATT+RVVL +AVTNKWPLRQLDVKNAFLNG
Sbjct: 763  VERLKARLVAKGYTHVPGLDYTDIFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNG 822

Query: 214  TLIERVHMEQPPEYIDPRFPTH-------------------------------------- 273
            TL E V+MEQPP YID RFPTH                                      
Sbjct: 823  TLTEHVYMEQPPGYIDHRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADT 882

Query: 274  -------QSNIIYLLLYVDDIIVTDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASP 333
                   QS++IYLLLYVDDIIVT NN SL+DSFTRKLH EFATKDLGSL+YFLGLEASP
Sbjct: 883  SLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLNYFLGLEASP 942

Query: 334  TSDGLFISQLKYARDILIRAQLLDSKPVHTPMVVSQHLITDGSPFSDPTLYKSLVGALQY 393
            T DGLFISQLKYARDIL RAQLLDSKPVHTPMVVSQHL   GSPFS+PTLY+SLVGALQY
Sbjct: 943  TPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQY 1002

Query: 394  LTITRPDIAYVVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYS 451
            LTITRPDIA+ VNSVSQFLHAPT DHFLAVKRILRYVKGTLHFGLTFRPSTIPS LVAYS
Sbjct: 1003 LTITRPDIAHAVNSVSQFLHAPTIDHFLAVKRILRYVKGTLHFGLTFRPSTIPSALVAYS 1062

[Close]

BLAST of CmaCh06G009780 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 297.4 bits (760), Expect = 2.1e-80
Identity = 171/435 (39.31%), Postives = 234/435 (53.79%), Query Frame = 0


Query: 69  IFKTRHPA--NLAKN-PAWVAAMDEEIRVLQQNDTWTLVPRPANTNIVGSKWVFRIKYLP 128
           I K + P+  N AK    W  AMD+EI  ++   TW +   P N   +G KWV++IKY  
Sbjct: 80  IAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNS 139

Query: 129 DGSVEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIRVVLFIAVTNKWPLRQLDVKNAF 188
           DG++E +KA LVAKGYTQ  G+D+ +TFSPV K T+++++L I+    + L QLD+ NAF
Sbjct: 140 DGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAF 199

Query: 189 LNGTLIERVHMEQPPEY-------IDPRFPTHQSNIIY---------------------- 248
           LNG L E ++M+ PP Y       + P    +    IY                      
Sbjct: 200 LNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGF 259

Query: 249 --------------------LLLYVDDIIVTDNNSSLIDSFTRKLHFEFATKDLGSLSYF 308
                               +L+YVDDII+  NN + +D    +L   F  +DLG L YF
Sbjct: 260 VQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYF 319

Query: 309 LGLEASPTSDGLFISQLKYARDILIRAQLLDSKPVHTPMVVSQHLIT-DGSPFSDPTLYK 368
           LGLE + ++ G+ I Q KYA D+L    LL  KP   PM  S       G  F D   Y+
Sbjct: 320 LGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYR 379

Query: 369 SLVGALQYLTITRPDIAYVVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSTI 428
            L+G L YL ITR DI++ VN +SQF  AP   H  AV +IL Y+KGT+  GL F  S  
Sbjct: 380 RLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL-FYSSQA 439

Query: 429 PSTLVAYSDADWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSSSSCESEYRALATTA 451
              L  +SDA +  C DTRRST+GY ++LG +L+SW +KKQ  VS SS E+EYRAL+   
Sbjct: 440 EMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFAT 499

[Close]

BLAST of CmaCh06G009780 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 229.9 bits (585), Expect = 4.1e-60
Identity = 115/226 (50.88%), Postives = 159/226 (70.35%), Query Frame = 0


Query: 215 IYLLLYVDDIIVTDNNSSLIDSFTRKLHFEFATKDLGSLSYFLGLEASPTSDGLFISQLK 274
           +YLLLYVDDI++T ++++L++    +L   F+ KDLG + YFLG++      GLF+SQ K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 275 YARDILIRAQLLDSKPVHTPMVVSQHLITDGSPFSDPTLYKSLVGALQYLTITRPDIAYV 334
           YA  IL  A +LD KP+ TP+ +  +     + + DP+ ++S+VGALQYLT+TRPDI+Y 
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120

Query: 335 VNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAYSDADWAGCPDTR 394
           VN V Q +H PT   F  +KR+LRYVKGT+  GL    ++    + A+ D+DWAGC  TR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNS-KLNVQAFCDSDWAGCTSTR 180

Query: 395 RSTSGYSIYLGNNLVSWSAKKQPTVSSSSCESEYRALATTAAELFW 441
           RST+G+  +LG N++SWSAK+QPTVS SS E+EYRALA TAAEL W
Sbjct: 181 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of CmaCh06G009780 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 104.4 bits (259), Expect = 2.6e-22
Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 61  MITRAKTGIFKTRHPANLA----------------KNPAWVAAMDEEIRVLQQNDTWTLV 120
           M+TR+K GI K     +L                 K+P W  AM EE+  L +N TW LV
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILV 60

Query: 121 PRPANTNIVGSKWVFRIKYLPDGSVEHFKACLVAKGYTQVPGLDYTDTFSPVVKATTIRV 170
           P P N NI+G KWVF+ K   DG+++  KA LVAKG+ Q  G+ + +T+SPVV+  TIR 
Sbjct: 61  PPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRT 120

[Close]

BLAST of CmaCh06G009780 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-15
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 323 YLTITRPDIAYVVNSVSQFLHAPTADHFLAVKRILRYVKGTLHFGLTFRPSTIPSTLVAY 382
           YLTITRPD+ + VN +SQF  A       AV ++L YVKGT+  GL F  +T    L A+
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGL-FYSATSDLQLKAF 61

Query: 383 SDADWAGCPDTRRSTSGY 401
           +D+DWA CPDTRRS +G+
Sbjct: 62  ADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of CmaCh06G009780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	3.7e-98	41.00	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.5e-96	40.42	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	5.7e-59	50.88	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P04146	2.8e-58	31.26	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	1.3e-55	35.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CmaCh06G009780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438J6Z9	5.9e-200	62.34	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A5C5R8	4.7e-197	72.96	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438E763	1.4e-196	74.54	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438E763	2.6e-06	81.58	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438IYJ9	9.0e-07	81.58	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]

BLAST of CmaCh06G009780 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX04731.1	1.2e-199	62.34	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
CAN73071.1	9.7e-197	72.96	hypothetical protein VITISV_032383 [Vitis vinifera]	[more]
RVW43615.1	2.8e-196	74.54	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW43615.1	5.4e-06	81.58	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVX01763.1	4.5e-194	73.92	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

Pages

BLAST of CmaCh06G009780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.1e-80	39.31	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.1e-60	50.88	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	2.6e-22	42.40	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00240.1	4.0e-15	51.28	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 98..202 e-value: 1.3E-28 score: 100.3 coord: 213..295 e-value: 1.7E-13 score: 50.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..52
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 77..401
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 380..451 e-value: 3.38405E-37 score: 131.436
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 98..451

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009780.1	CmaCh06G009780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044267	cellular protein metabolic process
biological_process	GO:0015074	DNA integration
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity