CmaCh06G009630 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G009630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Late cornified envelope protein 1E
Location	Cma_Chr06: 6561492 .. 6562214 (+)
RNA-Seq Expression	CmaCh06G009630
Synteny	CmaCh06G009630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCACACGCCCCTTCCCCTCTCTCCTCTCCGCCCCTTCCGCCTCTCTGCCTCCTCTCCGAAAGAGACCTCTCCGCCCACTATCTCTCCCTCTTATTTAACCCCCCTCTCTCCCCTCTCCCCCTTAATCATCAACATGGCTTCACATCATCCTCATCCTCTTCCTCTTCCTCTTCCTCTTCCTCCCGTTTGTTGCTTGTGCGGCGACGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTTCAACACTCGTAAGAATTCCTTAATTTTGATTCTTTTGTTGTTGTGGGAGAATGTTTGCTTAATCCAAATATATAGATATTTATCTTATAATAAAATATCATTATATATATAGTAAACTATCATGAGACCAGTAATGGATATATTGTTGGGGTTTGGTTCAGTTATTGCAGCAACTATTACGGCGAATCGGCAGAGGCTATTGAAGTCTGCGATTGGTGCAGATGTGAACGGAGATGTGGCCGCCGTGGCTCTGCTGCAAGGAAGTTTGGCGTCGCATCCCAAAAAAAGAGCTCCGGCCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAAACGTTGTTATTGTTCCAGAAATTTTGAATTTCTCATACCAATATTTTAAGCTTAATAAATATAAATATTCATAAATTT

mRNA sequence

GTCCACACGCCCCTTCCCCTCTCTCCTCTCCGCCCCTTCCGCCTCTCTGCCTCCTCTCCGAAAGAGACCTCTCCGCCCACTATCTCTCCCTCTTATTTAACCCCCCTCTCTCCCCTCTCCCCCTTAATCATCAACATGGCTTCACATCATCCTCATCCTCTTCCTCTTCCTCTTCCTCTTCCTCCCGTTTGTTGCTTGTGCGGCGACGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTTCAACACTCTTATTGCAGCAACTATTACGGCGAATCGGCAGAGGCTATTGAAGTCTGCGATTGGTGCAGATGTGAACGGAGATGTGGCCGCCGTGGCTCTGCTGCAAGGAAGTTTGGCGTCGCATCCCAAAAAAAGAGCTCCGGCCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAAACGTTGTTATTGTTCCAGAAATTTTGAATTTCTCATACCAATATTTTAAGCTTAATAAATATAAATATTCATAAATTT

Coding sequence (CDS)

ATGGCTTCACATCATCCTCATCCTCTTCCTCTTCCTCTTCCTCTTCCTCCCGTTTGTTGCTTGTGCGGCGACGTCGGCTTTCCGGCCAACCTCTTCCGCTGCACCCTCTGCTCTCACCGGTTTCAACACTCTTATTGCAGCAACTATTACGGCGAATCGGCAGAGGCTATTGAAGTCTGCGATTGGTGCAGATGTGAACGGAGATGTGGCCGCCGTGGCTCTGCTGCAAGGAAGTTTGGCGTCGCATCCCAAAAAAAGAGCTCCGGCCAGGATAAAAGAGAAAGAAATTCCGGTGGAATGCCGTCGCCTCGGGTTGCTCCACGGCGGTACAAGCTTCTCAAGGATGTTATGTGTTAA

Protein sequence

MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC

Homology

[Close]

BLAST of CmaCh06G009630 vs. ExPASy TrEMBL
Match: A0A6J1IH20 (uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 9.1e-65
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60
           MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 118

[Close]

BLAST of CmaCh06G009630 vs. ExPASy TrEMBL
Match: A0A6J1IAU2 (uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 6.5e-63
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60
           MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           DWCRCERRCGRRGSAARKFGVASQ KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQ-KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

[Close]

BLAST of CmaCh06G009630 vs. ExPASy TrEMBL
Match: A0A5D3DB67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00440 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.9e-28
Identity = 68/105 (64.76%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 16  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GESAEA-IEVCDWCRCERRCGRRG 75
           PP+CCLCGDVGFPANLFRCT CS+RFQHSYCSNYY GES +A I VCDWCR E+R  RR 
Sbjct: 5   PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT-RRP 64

Query: 76  SAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           +A   F   + +K     +   ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  AA---FATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of CmaCh06G009630 vs. ExPASy TrEMBL
Match: A0A1S3AVF1 (uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 8.9e-28
Identity = 68/105 (64.76%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 16  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GESAEA-IEVCDWCRCERRCGRRG 75
           PP+CCLCGDVGFPANLFRCT CS+RFQHSYCSNYY GES +A I VCDWCR E+R  RR 
Sbjct: 45  PPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT-RRP 104

Query: 76  SAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           +A   F   + +K     +   ++ G+PSPR APRRYKLLKDVMC
Sbjct: 105 AA---FATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of CmaCh06G009630 vs. ExPASy TrEMBL
Match: A0A0A0L5P1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 16  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GESAEA-IEVCDWCRCERRCGRRG 75
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GES +A I VCDWCR E+R  R  
Sbjct: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64

Query: 76  SAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
                F   + +KS+   +R  ++ G+PSPR APRRYKLLKDVMC
Sbjct: 65  -----FASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of CmaCh06G009630 vs. NCBI nr
Match: XP_022974249.1 (uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima])

HSP 1 Score: 255.8 bits (652), Expect = 1.9e-64
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60
           MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 118

[Close]

BLAST of CmaCh06G009630 vs. NCBI nr
Match: XP_022974251.1 (uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima])

HSP 1 Score: 249.6 bits (636), Expect = 1.3e-62
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0


Query: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60
           MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC
Sbjct: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           DWCRCERRCGRRGSAARKFGVASQ KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKFGVASQ-KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

[Close]

BLAST of CmaCh06G009630 vs. NCBI nr
Match: KAG6597027.1 (hypothetical protein SDJN03_10207, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.8 bits (582), Expect = 2.5e-56
Identity = 110/118 (93.22%), Postives = 111/118 (94.07%), Query Frame = 0


Query: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60
           MASHH    PLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE+AEAIE C
Sbjct: 1   MASHH----PLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGETAEAIEAC 60

Query: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           DWCRCERRCGRRGSAARK GVASQ KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKSGVASQ-KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 113

[Close]

BLAST of CmaCh06G009630 vs. NCBI nr
Match: KAG7028505.1 (hypothetical protein SDJN02_09686, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 223.8 bits (569), Expect = 7.9e-55
Identity = 108/118 (91.53%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60
           MASHH      PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIE C
Sbjct: 1   MASHH------PLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGEMAEAIEAC 60

Query: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           DWCRCERRCGRRGSAARK GVASQ KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKSGVASQ-KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 111

[Close]

BLAST of CmaCh06G009630 vs. NCBI nr
Match: XP_023540879.1 (uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 220.3 bits (560), Expect = 8.7e-54
Identity = 107/118 (90.68%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 1   MASHHPHPLPLPLPLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVC 60
           MASHH        PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGE AEAIEVC
Sbjct: 1   MASHH--------PLPPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGELAEAIEVC 60

Query: 61  DWCRCERRCGRRGSAARKFGVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 119
           DWCRCERRCGRRGSAARK GVASQ KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC
Sbjct: 61  DWCRCERRCGRRGSAARKSGVASQ-KSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 109

[Close]

BLAST of CmaCh06G009630 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-23
Identity = 56/122 (45.90%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 18  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCE--RRCGRR--- 77
           VCC+CGDVGF   LF C+ C +RFQHSYCS+YY E A+ I++CDWC+CE   R G +   
Sbjct: 8   VCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYYKEQADPIKICDWCQCEAKSRTGAKHGV 67

Query: 78  --GSAARKF--------------GVASQKKSSGQDKRERNSGGMPSPRVAPRRYKLLKDV 119
             GS+ R +               +     SS     ++   G+PSPR A RRYKLLKDV
Sbjct: 68  NGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATRRYKLLKDV 127

[Close]

BLAST of CmaCh06G009630 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.4 bits (259), Expect = 6.5e-23
Identity = 59/130 (45.38%), Postives = 71/130 (54.62%), Query Frame = 0


Query: 18  VCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYYGESAEAIEVCDWCRCERRCGRRGSAAR 77
           VCC+CGDVGF   LF C  C  RFQHSYCSNYYG+ AE  E+CDWCR + R  +  + AR
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDR--KLSNVAR 63

Query: 78  KFGVASQKKSS----------------GQDKRERNS-------------GGMPSPRVAPR 119
             G +S+K SS                G   +  N+             GG+ SP+ A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

The following BLAST results are available for this feature:

BLAST of CmaCh06G009630 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G009630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IH20	9.1e-65	100.00	uncharacterized protein LOC111472884 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IAU2	6.5e-63	99.15	uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5D3DB67	8.9e-28	64.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AVF1	8.9e-28	64.76	uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=...	[more]
A0A0A0L5P1	1.2e-27	63.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1	[more]

BLAST of CmaCh06G009630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022974249.1	1.9e-64	100.00	uncharacterized protein LOC111472884 isoform X1 [Cucurbita maxima]	[more]
XP_022974251.1	1.3e-62	99.15	uncharacterized protein LOC111472884 isoform X2 [Cucurbita maxima]	[more]
KAG6597027.1	2.5e-56	93.22	hypothetical protein SDJN03_10207, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7028505.1	7.9e-55	91.53	hypothetical protein SDJN02_09686, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023540879.1	8.7e-54	90.68	uncharacterized protein LOC111801126 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh06G009630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60520.1	3.8e-23	45.90	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G02070.1	6.5e-23	45.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..107
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 85..118 coord: 17..79
None	No IPR available	PANTHER	PTHR33779:SF16	SUBFAMILY NOT NAMED	coord: 85..118 coord: 17..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009630.1	CmaCh06G009630.1	mRNA