CmaCh06G009580 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G009580
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Location	Cma_Chr06: 6493964 .. 6494293 (-)
RNA-Seq Expression	CmaCh06G009580
Synteny	CmaCh06G009580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGCGGAGGAAGCATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGGGCGATGCCGAGGCCAGGAGTGGCATGTCGGAACTGATTGGTGAGCATCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCGCTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCCCAGCCACTAA

mRNA sequence

ATGGGTGGCGGAGGAAGCATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGGGCGATGCCGAGGCCAGGAGTGGCATGTCGGAACTGATTGGTGAGCATCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCGCTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCCCAGCCACTAA

Coding sequence (CDS)

ATGGGTGGCGGAGGAAGCATCAGCATGGTGATGGTGAGAGGAAGAAGGAGAATGGATCCTGTTATATACTTGCTCGCCGACAAGGTAGATGCCGAAAGCAACGAGGGCGATGCCGAGGCCAGGAGTGGCATGTCGGAACTGATTGGTGAGCATCGGATGCTTCCTCCACTCGTCTGTCCTCCTGAAGAACTCTCCAGTCGATCCCAAAGGCTTATTCGCCATTGCAAAACAGCTCTGATTTCCGCTTCCTTGCGCTCCTTCACCTCGTCCTGGATGGGTGCAGATCGCCACTTCCTCCTGTCCTCGCTTTTCAGCCTTCCCAGCCACTAA

Protein sequence

MGGGGSISMVMVRGRRRMDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRHCKTALISASLRSFTSSWMGADRHFLLSSLFSLPSH

Homology

[Close]

BLAST of CmaCh06G009580 vs. ExPASy TrEMBL
Match: A0A5A7UKX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001210 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MGGGGSISMVMVRGRRRMDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCP 60
          MGGGG I MV+VR R R+DPV+ LLADKVDAESNEGDAEAR GM+ELIG+H MLPP + P
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLIRH 75
          PEELS RSQRLIRH
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of CmaCh06G009580 vs. ExPASy TrEMBL
Match: A0A0A0KP64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MGGGGSISMVMVRGRRRMDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCP 60
          MGGGG I MV+VR RRR+DPV+ LLADKVDAESNEGDAEARSG++ELIG+H MLPP + P
Sbjct: 1  MGGGGCIGMVVVRRRRRIDPVVNLLADKVDAESNEGDAEARSGVTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLIRH 75
          PEELS RSQRLI H
Sbjct: 61 PEELSRRSQRLIGH 74

[Close]

BLAST of CmaCh06G009580 vs. ExPASy TrEMBL
Match: A0A6A1V9T8 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR7G029153 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.3e-11
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 18 MDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRH 75
          M+ V+ LLAD+VD+E N+GDAEARSG+++LI +HR+LPPLV PPEELS  SQ LI H
Sbjct: 1  MESVVDLLADEVDSEGNKGDAEARSGVAKLICQHRVLPPLVPPPEELSCGSQCLICH 57

[Close]

BLAST of CmaCh06G009580 vs. ExPASy TrEMBL
Match: A0A5N5HLF1 (4-diphosphocytidyl-2C-methyl-D-erythritol synthase OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_042700 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 2  GGGGSISMVMVRGRRRMDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCPP 61
          GGGG        G    + V+ LLAD+VDAE NE DA+A  G++ELIGEHRMLPPLV PP
Sbjct: 8  GGGGG-------GGWSDEAVVDLLADEVDAECNESDAKAGRGVAELIGEHRMLPPLVPPP 67

Query: 62 EELSSRSQRLIRHCKTALISASLRSFT--SSWMGADR 97
          EEL  R Q   RH K       + +FT  S+ + AD+
Sbjct: 68 EELPCRKQFSFRH-KAKAPPTRIATFTCFSARVNADK 96

[Close]

BLAST of CmaCh06G009580 vs. ExPASy TrEMBL
Match: A0A328E5M9 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_007524 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.9e-10
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 15 RRRMDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRH 74
          RR +D V+   A +VDAE N+GDAE R+G++ELI +HR+LPPLV PPEELS RS+RL  +
Sbjct: 2  RRSIDLVVGGFAGEVDAEGNKGDAEPRNGVAELIRQHRVLPPLVPPPEELSRRSKRLCHY 61

[Close]

BLAST of CmaCh06G009580 vs. NCBI nr
Match: KAG6597022.1 (hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.4 bits (529), Expect = 3.2e-50
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MGGGGSISMVMVRGRRRMDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCP 60
           MGGGGSISMVMVRGRRRMDPVIYLLA+KVDAESNE DAEARSGMSELIGEHRMLPPLVCP
Sbjct: 1   MGGGGSISMVMVRGRRRMDPVIYLLAEKVDAESNESDAEARSGMSELIGEHRMLPPLVCP 60

Query: 61  PEELSSRSQRLIRHCKTALISASLRSFTSSWMGADRHFLLSSLFSLPSH 110
           PEELSSRSQRLIRHCKTALIS SLRSFTSSWMGADRHFLLSSLFSLPS+
Sbjct: 61  PEELSSRSQRLIRHCKTALISLSLRSFTSSWMGADRHFLLSSLFSLPSY 109

[Close]

BLAST of CmaCh06G009580 vs. NCBI nr
Match: KAA0054191.1 (hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK15069.1 hypothetical protein E5676_scaffold45G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 3.3e-23
Identity = 58/74 (78.38%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MGGGGSISMVMVRGRRRMDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCP 60
          MGGGG I MV+VR R R+DPV+ LLADKVDAESNEGDAEAR GM+ELIG+H MLPP + P
Sbjct: 1  MGGGGCIGMVVVRRRGRIDPVVNLLADKVDAESNEGDAEARGGMTELIGKHGMLPPFISP 60

Query: 61 PEELSSRSQRLIRH 75
          PEELS RSQRLIRH
Sbjct: 61 PEELSRRSQRLIRH 74

[Close]

BLAST of CmaCh06G009580 vs. NCBI nr
Match: KAB1208638.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Morella rubra])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 0


Query: 18 MDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRH 75
          M+ V+ LLAD+VD+E N+GDAEARSG+++LI +HR+LPPLV PPEELS  SQ LI H
Sbjct: 1  MESVVDLLADEVDSEGNKGDAEARSGVAKLICQHRVLPPLVPPPEELSCGSQCLICH 57

[Close]

BLAST of CmaCh06G009580 vs. NCBI nr
Match: KAB2627647.1 (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 2  GGGGSISMVMVRGRRRMDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCPP 61
          GGGG        G    + V+ LLAD+VDAE NE DA+A  G++ELIGEHRMLPPLV PP
Sbjct: 8  GGGGG-------GGWSDEAVVDLLADEVDAECNESDAKAGRGVAELIGEHRMLPPLVPPP 67

Query: 62 EELSSRSQRLIRHCKTALISASLRSFT--SSWMGADR 97
          EEL  R Q   RH K       + +FT  S+ + AD+
Sbjct: 68 EELPCRKQFSFRH-KAKAPPTRIATFTCFSARVNADK 96

[Close]

BLAST of CmaCh06G009580 vs. NCBI nr
Match: RAL52756.1 (hypothetical protein DM860_007524 [Cuscuta australis])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 15 RRRMDPVIYLLADKVDAESNEGDAEARSGMSELIGEHRMLPPLVCPPEELSSRSQRLIRH 74
          RR +D V+   A +VDAE N+GDAE R+G++ELI +HR+LPPLV PPEELS RS+RL  +
Sbjct: 2  RRSIDLVVGGFAGEVDAEGNKGDAEPRNGVAELIRQHRVLPPLVPPPEELSRRSKRLCHY 61

The following BLAST results are available for this feature:

BLAST of CmaCh06G009580 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G009580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKX3	1.6e-23	78.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KP64	1.6e-23	78.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G528950 PE=4 SV=1	[more]
A0A6A1V9T8	5.3e-11	66.67	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Morel...	[more]
A0A5N5HLF1	1.6e-10	49.48	4-diphosphocytidyl-2C-methyl-D-erythritol synthase OS=Pyrus ussuriensis x Pyrus ...	[more]
A0A328E5M9	5.9e-10	60.00	Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_007524 PE=4 SV=1	[more]

BLAST of CmaCh06G009580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6597022.1	3.2e-50	96.33	hypothetical protein SDJN03_10202, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0054191.1	3.3e-23	78.38	hypothetical protein E6C27_scaffold131G001270 [Cucumis melo var. makuwa] >TYK150...	[more]
KAB1208638.1	1.1e-10	66.67	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic [Morella...	[more]
KAB2627647.1	3.2e-10	49.48	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Pyrus ussuriensis x Py...	[more]
RAL52756.1	1.2e-09	60.00	hypothetical protein DM860_007524 [Cuscuta australis]	[more]

BLAST of CmaCh06G009580 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G009580.1	CmaCh06G009580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0050518	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity