CmaCh06G008660 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G008660
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr06: 4939517 .. 4940663 (-)
RNA-Seq ExpressionCmaCh06G008660
SyntenyCmaCh06G008660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCCCCCTCCCATTATATGCTCTGCTCTGGATTCTTGTCTTCCTCTCTCCTTCTCTTACTATTATTCCTTTCTTCCCCCCCTCACTACTCACTCCCTCGCTCTGCTGCCTCCTGCTCTTCTGGATCTGAATTCATTGCGCTTCTTCAATCCTTCGCTTCTACTTCTACCAACATCTGGGTATCATTTTCCTGCTCTTCTGTAGGCTTTAGGATCGCTTATTTCTAGGCTCTTTCATGCTTTTGCCAAGAGTGACTTTTGTAGTGTCTATCTTCTCTCTCTCTCTCTCTCTCTTCACCAACTCTTTTCAATCTTTCGTCTAATAATGCCTTACATCGCCTTCACCTGCCAATCGTTTGAACTCTTTGATTACAACGGGAGTATTTTTAGATCTGAAATTTTTGTCTCAGATCATTCTAGTTCCCATCTTTCACTGCTGCTCTTCTTTTTCTTTTTCTCACGCACCTCTACGCCTTCCATTTCATTTTTCCAGTTCCTTCTATCGGAATGTGATGGTACTGGGAGAGAGTAGAGTGTCCCCAACTCTTTGATGCCCTTCATTGTATCAAATGTAGGGCTTAAATTTGGTTGCGATTCTTCTTTTCGTGTGTATATGACAAATGGGAGATTTGCACATTTTTTGTTGACTAAATTCTCAGAACCCCATGGTGAACTTTTGTGATTGGGAGATTGAGTTGGAGTCTTGATCTCAAAAACTTTGTTCTGGATTCTTGGGCCGTGTCTTTCGTTTGGTGGCCTATTTAGTTGATTTAGTTCTCTTAGATGAAATGAATTACTTAAATTTTGAATAATCTAGCTCTTGGGTTATGTGTAGAACGAATTGTTAACTGATCGGTGTGATGAAATGTCAGTTAAGTTTTGCTTCTTTCTCTCTCACACTCAAATACACACACCATGCACAGACTGCATATTTTCGCAGAGATTGTTTGAGGCAACTTGTATTGGTTCTATTGTTCCATTCTTCCATATACTTGTTCTTTTTTAATGATATCAAAGACACATTTGTGTGTGGGTGGGGGTGACACATTCTCCAGGCTTAATGTTGCATGATTTCATTTCATATGAACAACCTAACTTACAGGGTCTGATTGATGCAGATAAAAGTGTGAATTTTACAGATTCGTGA

mRNA sequence

TCTTCCCCCTCCCATTATATGCTCTGCTCTGGATTCTTGTCTTCCTCTCTCCTTCTCTTACTATTATTCCTTTCTTCCCCCCCTCACTACTCACTCCCTCGCTCTGCTGCCTCCTGCTCTTCTGGATCTGAATTCATTGCGCTTCTTCAATCCTTCGCTTCTACTTCTACCAACATCTGGGGTCTGATTGATGCAGATAAAAGTGTGAATTTTACAGATTCGTGA

Coding sequence (CDS)

ATGCTCTGCTCTGGATTCTTGTCTTCCTCTCTCCTTCTCTTACTATTATTCCTTTCTTCCCCCCCTCACTACTCACTCCCTCGCTCTGCTGCCTCCTGCTCTTCTGGATCTGAATTCATTGCGCTTCTTCAATCCTTCGCTTCTACTTCTACCAACATCTGGGGTCTGATTGATGCAGATAAAAGTGTGAATTTTACAGATTCGTGA

Protein sequence

MLCSGFLSSSLLLLLLFLSSPPHYSLPRSAASCSSGSEFIALLQSFASTSTNIWGLIDADKSVNFTDS
Homology
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BLAST of CmaCh06G008660 vs. NCBI nr
Match: KAG6596940.1 (65-kDa microtubule-associated protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 1  MLCSGFLSSSLLLLLLFLSSPPH---YSLPRSAASCSSGSEFIALLQSFASTSTNIW 55
          MLCSGFLSSSLLLLLLFLSSPPH   +SL  SA  CSSGSE+IALLQSFASTSTNIW
Sbjct: 1  MLCSGFLSSSLLLLLLFLSSPPHSLTHSLTHSATPCSSGSEYIALLQSFASTSTNIW 57

The following BLAST results are available for this feature:
BLAST of CmaCh06G008660 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G008660 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G008660 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596940.13.3e-1384.2165-kDa microtubule-associated protein 1, partial [Cucurbita argyrosperma subsp. ... [more]
BLAST of CmaCh06G008660 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G008660.1CmaCh06G008660.1mRNA