CmaCh06G008190 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G008190
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribosomal protein
Location	Cma_Chr06: 4405209 .. 4408078 (-)
RNA-Seq Expression	CmaCh06G008190
Synteny	CmaCh06G008190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACCGGCCCAGCCCATTTTATACAACAAAGATCAAACAAAGGAAATTTCTTTTGCCCTCGCCTTCTCTTCCCATTTTTCGAAAGCATCGCCTAAAATCCGCAGCGGCGTCGGCGCCGACCGTCATTTCTCTCGGCAATCGGCTAAAATCTGTAACAGTTCGAAAGAGGAGATTTGGTGCTATCAATCAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAGGAAGGAGGCATTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGTCACTGACGTTAAGTCGTTTGGAGTTGTTCAATTGGGTTATGGCATTAAGAAGCTTGATGGAAGATATTTTCAGGTGATCTTTGATTTCTGTTGTTTTCTTGTTGAAGCTTTTATCATACTCCGTTTGTTGTTCTTGTTAGCTGGATGGTTTCTGTAAATCTCATGAACACTGTGTTAACTGAGCATTGGATACCTTTAATTAGCTTGTTCGCGTATTCTAAGTGGCTATGGTTAATTTAGTTGAAGTTCCCAGTAAACCTTTGTACTTAAGAACTGCAAATCATTGAAATGGTGGCTGTATTTGCTCATGGTTAATGATGTAGAACCAGTTTACTCTCATAAATTAAGCCTATAAACACTGCTTTAATTCATGAATTTTGTTTTGGTTTTGTTATCTAATCTCTATCAATATGTTCAAAATTCAAGCTTAGTTGTGTGAGATTCCACATCGGTTAGAGGAGAACAAAACATTTTTTACAAGAGTGTGGAAACCTCTTCATAGCCGACGCGTTATAGAAATTGTTAGGGGAAGTCCAAAAGGGAAAGCCCAAAGAGGACAATATTTGTTATTAGTGGGCTAGGGCCGTTACAAATAGTATGAAAGTCTGATATCGGGCAATGTACCAACGAGGAGGCTAAGCCCTGAAGGGGGGTGGACACGAGGTGGTGTGCTAGCAACGATGCTAGGCCCCGAAGGGGGTGGATTGGGGTGGGGTCCCACATCGATTGAAGAAGGGAACGAGTGTCAGCGAGGACGTTGGACCTGAAGGGTGGTGGTTTGTGAATTCTCACATCGGTTGGAGGGGAGAACGAAACATTCTTTATAAGGGTGTAGAAACTTCTCCCTAGCAGATGCGTTTTAAGAACCTTGAGGGGGAAGCCCGAAGGGGAAAGTCCAAAAAGGACAATATCTGCTAGCTAGCTTGGGCTGTTACAAGATTTGTGAGCTAAAAAGAACGTTTTTTTTTTAATAAAAAAATGGATTTTTATGAAGAATTCCGTAAGAAATTACTAGAAAGCAAGCATAAATTTCAAAAATAGAAAACTAAAGACCAAATCGTTATAAAACTAGATAATAGCTTTTGGCTTTTGATATTGGAATGAAAGAAATGTCGTGATTTTGAGATTTCTTTTATTATGAAGAAGTAGGTGAGTTTCTTCAGTTTCAGGCTTTTGTATGTTAACTCTATCTGATGCTTTCCAATAGAGCAGTGACCCTAATAAGTCCTCTTAGTTATTACTTACTACACATATTTCTTATAAATTGTTCATAATTCAAGGGAATCATTATCTATTCTCTTAATATGAATGGGTCGTCCGACGTTACTACATCTAGTTGCCAAGATAACTCGTAGGATATTATATTATAAGTAGATGGTTTCCATAGCTTAAACTCAGAACCACAAACCTCCCATCTATGTAGTGAGTTCTTCCTTCATGATTGTCGTCACCTCAAATGAAGCTTCTGATATCGTAGCTTCAGTCATCTAGCCACCTTATTGGGGACCTCAACAATAGAAAAGAAGAAGGTTGGAATGCTTGAGAAGATTACTCAGACTAGGTTAATTGGTCTACTCTTAAGCGGTCGTAATTATGCTATGATATGGGTCAAAAAACATGCTTACAAACCTGCATGATTTAAATGTTAATCATCCCCTGAATATTGACTCCTGACCCTATGATCCTTGTATATAACTTGATGGCTATTAGACCCAACTAGCTGAATATGACTCAGTTGGAACTACCAAAAGTCGAAGTCGATACCCAAACTCTGTTGTGTGTCATGAACACAATATCTTAGGAGTTCTAACTGGAGCTTGTGTTCATCTGATGTATTGTCAAGTTTCGTGACGCTTTTGTGGGATCGACGAAAAAAATTTGATCTATTTATTTGTAGTGGATGTCTGAATCAATCAATGACATTGTTATTCTTTCTTGTATGGTAAAGGGGCAACTTATGCAGATGACGATGATGGCCACTCCGAACATGAACAAAGAGTTACATTACCTGAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACACAAAATATGGCCTGGAATTCCTTAGCGAAGACGATGGAAAGAATGAACTTAACAAATTTCCTCGATTTAGCATGATTGGTGATGACGACGCAGATGAAGAAGACGACGATGACGACGATGACGACGTGGAGCAAGAAGGAGAGAGGAGAGAAGAGTGAATTTTGGTTGTCTCTATTATGATAGCGCAGGTATGAACTTAGTGAAGGGACCTCTGGTACCATTCTTGTGATATTGTAGGCAGACAAATAAAGAGATGGGTGGTTTCTTTAGTTTGTCCATATCATCTGATTCTCTGAAACAAAGATCCATAAGTGCCTTTTGCCTGTTTGGGGGATGTTTTTGTTGAGATGTCAGGTCTTGGGTTCGAACCTCTAGATGAAAAGTTTATGTAATGAATATCTCATCTTTTAAAACTTAAAGGTAATACATGCATTAACAACAATTTTATTTTAAGTAATATCAATTCAAATATAGTTCCGTGGTGTGTAATATTGCTGTGAGGGTGACGA

mRNA sequence

AAACCGGCCCAGCCCATTTTATACAACAAAGATCAAACAAAGGAAATTTCTTTTGCCCTCGCCTTCTCTTCCCATTTTTCGAAAGCATCGCCTAAAATCCGCAGCGGCGTCGGCGCCGACCGTCATTTCTCTCGGCAATCGGCTAAAATCTGTAACAGTTCGAAAGAGGAGATTTGGTGCTATCAATCAAGATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAGGAAGGAGGCATTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGTCACTGACGTTAAGTCGTTTGGAGTTGTTCAATTGGGTTATGGCATTAAGAAGCTTGATGGAAGATATTTTCAGGGGCAACTTATGCAGATGACGATGATGGCCACTCCGAACATGAACAAAGAGTTACATTACCTGAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACACAAAATATGGCCTGGAATTCCTTAGCGAAGACGATGGAAAGAATGAACTTAACAAATTTCCTCGATTTAGCATGATTGGTGATGACGACGCAGATGAAGAAGACGACGATGACGACGATGACGACGTGGAGCAAGAAGGAGAGAGGAGAGAAGAGTGAATTTTGGTTGTCTCTATTATGATAGCGCAGGTATGAACTTAGTGAAGGGACCTCTGGTACCATTCTTGTGATATTGTAGGCAGACAAATAAAGAGATGGGTGGTTTCTTTAGTTTGTCCATATCATCTGATTCTCTGAAACAAAGATCCATAAGTGCCTTTTGCCTGTTTGGGGGATGTTTTTGTTGAGATGTCAGGTCTTGGGTTCGAACCTCTAGATGAAAAGTTTATGTAATGAATATCTCATCTTTTAAAACTTAAAGGTAATACATGCATTAACAACAATTTTATTTTAAGTAATATCAATTCAAATATAGTTCCGTGGTGTGTAATATTGCTGTGAGGGTGACGA

Coding sequence (CDS)

ATGCCTCTTTACGATTGTATGCTTTTGATGAAACCCCATGTGAGGAAGGAGGCATTGTTGGATTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGAAGAAATGGGGTTGTCACTGACGTTAAGTCGTTTGGAGTTGTTCAATTGGGTTATGGCATTAAGAAGCTTGATGGAAGATATTTTCAGGGGCAACTTATGCAGATGACGATGATGGCCACTCCGAACATGAACAAAGAGTTACATTACCTGAACAAGGAAGATCGGTTGTTGCGTTGGCTTTTAGTGAAGCATCGTGACACAAAATATGGCCTGGAATTCCTTAGCGAAGACGATGGAAAGAATGAACTTAACAAATTTCCTCGATTTAGCATGATTGGTGATGACGACGCAGATGAAGAAGACGACGATGACGACGATGACGACGTGGAGCAAGAAGGAGAGAGGAGAGAAGAGTGA

Protein sequence

MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYFQGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPRFSMIGDDDADEEDDDDDDDDVEQEGERREE

Homology

[Close]

BLAST of CmaCh06G008190 vs. ExPASy TrEMBL
Match: A0A6J1KXT7 (uncharacterized protein LOC111498530 OS=Cucurbita maxima OX=3661 GN=LOC111498530 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.5e-75
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 FSMIGDDDADEEDDDDDDDDVEQEGERREE 151
           FSMIGDDDADEEDDDDDDDDVEQEGERREE
Sbjct: 121 FSMIGDDDADEEDDDDDDDDVEQEGERREE 150

[Close]

BLAST of CmaCh06G008190 vs. ExPASy TrEMBL
Match: A0A6J1FEF6 (uncharacterized protein LOC111443208 OS=Cucurbita moschata OX=3662 GN=LOC111443208 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.3e-71
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRYF
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 FSMIGDDDADEEDDDDDDDDVEQEGERRE 150
           F MIGDDDADEEDDDDDDDD E + E+ E
Sbjct: 121 FKMIGDDDADEEDDDDDDDDEEYDVEQEE 149

[Close]

BLAST of CmaCh06G008190 vs. ExPASy TrEMBL
Match: A0A6J1CN79 (uncharacterized protein LOC111013137 OS=Momordica charantia OX=3673 GN=LOC111013137 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.4e-64
Identity = 131/152 (86.18%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR++
Sbjct: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTKYGLEFLSEDD K EL+KFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTKYGLEFLSEDDVKGELSKFPR 120

Query: 121 FSMIGDDDADEEDDDDDDD---DVEQEGERRE 150
             ++GDDD DEEDDDDD+D   DVEQE  + E
Sbjct: 121 IGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE 152

[Close]

BLAST of CmaCh06G008190 vs. ExPASy TrEMBL
Match: A0A7N2L1D1 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.2e-60
Identity = 120/150 (80.00%), Postives = 139/150 (92.67%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLL+KPHV+KEAL++LVAR+GKHV+RRNGV+ D+KSFG+VQLGYGIKKLDGRY+
Sbjct: 1   MPLYDCMLLLKPHVKKEALMELVARIGKHVYRRNGVLADMKSFGMVQLGYGIKKLDGRYY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGK EL+KF R
Sbjct: 61  QGQLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKGELSKFTR 120

Query: 121 FSMIGDDDADEEDDDDDDDDVEQEGERREE 151
            S+  DDD DE+DDDDDDD+ + + E ++E
Sbjct: 121 SSIYDDDDFDEDDDDDDDDEYDVDQEEKKE 150

[Close]

BLAST of CmaCh06G008190 vs. ExPASy TrEMBL
Match: A0A2P5AJN1 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_325710 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.8e-60
Identity = 118/146 (80.82%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLY+CMLL+KPHV+KEAL+DLVARVGKHV+RRNGV+T++KSFG VQLGYGIKKLDGRY+
Sbjct: 1   MPLYECMLLLKPHVKKEALMDLVARVGKHVYRRNGVLTELKSFGTVQLGYGIKKLDGRYY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQMTMMATPN+NKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSE D K+E +KFPR
Sbjct: 61  QGQLMQMTMMATPNINKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEGDSKDEFSKFPR 120

Query: 121 FSMIGDDDADEEDDDDDDDDVEQEGE 147
            S+  D+D DE+DDDDD+D+V++EG+
Sbjct: 121 SSIYDDEDIDEDDDDDDEDNVDEEGK 146

[Close]

BLAST of CmaCh06G008190 vs. NCBI nr
Match: XP_023005590.1 (uncharacterized protein LOC111498530 [Cucurbita maxima])

HSP 1 Score: 292.0 bits (746), Expect = 3.0e-75
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 FSMIGDDDADEEDDDDDDDDVEQEGERREE 151
           FSMIGDDDADEEDDDDDDDDVEQEGERREE
Sbjct: 121 FSMIGDDDADEEDDDDDDDDVEQEGERREE 150

[Close]

BLAST of CmaCh06G008190 vs. NCBI nr
Match: XP_022936695.1 (uncharacterized protein LOC111443208 [Cucurbita moschata])

HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70
Identity = 141/149 (94.63%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRYF
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120

Query: 121 FSMIGDDDADEEDDDDDDDDVEQEGERRE 150
           F MIGDDDADEEDDDDDDDD E + E+ E
Sbjct: 121 FKMIGDDDADEEDDDDDDDDEEYDVEQEE 149

[Close]

BLAST of CmaCh06G008190 vs. NCBI nr
Match: XP_023539684.1 (uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 275.0 bits (702), Expect = 3.8e-70
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRYF
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGKNELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKNELNKFPR 120

Query: 121 FSMIGDDDADEEDDDDDDDDVEQEGERRE 150
           F+MIGDDDADEEDDDDDDDD E + E+ E
Sbjct: 121 FNMIGDDDADEEDDDDDDDDEEYDVEQEE 149

[Close]

BLAST of CmaCh06G008190 vs. NCBI nr
Match: KAG6596891.1 (hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030167.1 hypothetical protein SDJN02_08514 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.8 bits (691), Expect = 7.2e-69
Identity = 138/149 (92.62%), Postives = 143/149 (95.97%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGRYF
Sbjct: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRYF 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRD KYGLEFLSEDDGK ELNKFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDAKYGLEFLSEDDGKKELNKFPR 120

Query: 121 FSMIGDDDADEEDDDDDDDDVEQEGERRE 150
           F+MIGDDDADEEDDDDD+DD E + E+ E
Sbjct: 121 FNMIGDDDADEEDDDDDNDDEEYDVEQEE 149

[Close]

BLAST of CmaCh06G008190 vs. NCBI nr
Match: XP_022143220.1 (uncharacterized protein LOC111013137 [Momordica charantia])

HSP 1 Score: 254.2 bits (648), Expect = 6.9e-64
Identity = 131/152 (86.18%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLLMKPHV+KEALLDLVARVGKHVFRRNGVVTD+KSFGVVQLGYGIKKLDGR++
Sbjct: 1   MPLYDCMLLMKPHVKKEALLDLVARVGKHVFRRNGVVTDIKSFGVVQLGYGIKKLDGRFY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQMTMMATPNMNKELHYLNKEDR+LRWLLVKHRDTKYGLEFLSEDD K EL+KFPR
Sbjct: 61  QGQLMQMTMMATPNMNKELHYLNKEDRMLRWLLVKHRDTKYGLEFLSEDDVKGELSKFPR 120

Query: 121 FSMIGDDDADEEDDDDDDD---DVEQEGERRE 150
             ++GDDD DEEDDDDD+D   DVEQE  + E
Sbjct: 121 IGIMGDDDTDEEDDDDDNDEEYDVEQEESKGE 152

[Close]

BLAST of CmaCh06G008190 vs. TAIR 10
Match: AT3G18760.1 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-44
Identity = 87/135 (64.44%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLL KP +RKE L+DLVAR+GKHV+ RNGV+T++KSFG V+LGYGI+KLDGR++
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
           QGQLMQ+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K G     ++D     N+   
Sbjct: 61  QGQLMQITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIGQS--EKEDSLTVPNRLTS 120

Query: 121 FSMIGDDDADEEDDD 136
            S+     +DE+D++
Sbjct: 121 GSLYDGSSSDEDDNN 133

[Close]

BLAST of CmaCh06G008190 vs. TAIR 10
Match: AT3G18760.2 (Translation elongation factor EF1B/ribosomal protein S6 family protein )

HSP 1 Score: 161.0 bits (406), Expect = 7.4e-40
Identity = 82/135 (60.74%), Postives = 103/135 (76.30%), Query Frame = 0


Query: 1   MPLYDCMLLMKPHVRKEALLDLVARVGKHVFRRNGVVTDVKSFGVVQLGYGIKKLDGRYF 60
           MPLYDCMLL KP +RKE L+DLVAR+GKHV+ RNGV+T++KSFG V+LGYGI+KLDGR++
Sbjct: 1   MPLYDCMLLFKPIIRKEGLIDLVARIGKHVYSRNGVLTEIKSFGKVELGYGIRKLDGRHY 60

Query: 61  QGQLMQMTMMATPNMNKELHYLNKEDRLLRWLLVKHRDTKYGLEFLSEDDGKNELNKFPR 120
                Q+TMM TPNMNKELHYLNKED+LLRWLLVKHRD K G     ++D     N+   
Sbjct: 61  -----QITMMTTPNMNKELHYLNKEDKLLRWLLVKHRDIKIGQS--EKEDSLTVPNRLTS 120

Query: 121 FSMIGDDDADEEDDD 136
            S+     +DE+D++
Sbjct: 121 GSLYDGSSSDEDDNN 128

The following BLAST results are available for this feature:

BLAST of CmaCh06G008190 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G008190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KXT7	1.5e-75	100.00	uncharacterized protein LOC111498530 OS=Cucurbita maxima OX=3661 GN=LOC111498530...	[more]
A0A6J1FEF6	6.3e-71	94.63	uncharacterized protein LOC111443208 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]
A0A6J1CN79	3.4e-64	86.18	uncharacterized protein LOC111013137 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A7N2L1D1	2.2e-60	80.00	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A2P5AJN1	3.8e-60	80.82	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_325710 PE=3 SV=...	[more]

BLAST of CmaCh06G008190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023005590.1	3.0e-75	100.00	uncharacterized protein LOC111498530 [Cucurbita maxima]	[more]
XP_022936695.1	1.3e-70	94.63	uncharacterized protein LOC111443208 [Cucurbita moschata]	[more]
XP_023539684.1	3.8e-70	93.96	uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]	[more]
KAG6596891.1	7.2e-69	92.62	hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022143220.1	6.9e-64	86.18	uncharacterized protein LOC111013137 [Momordica charantia]	[more]

BLAST of CmaCh06G008190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18760.1	1.7e-44	64.44	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]
AT3G18760.2	7.4e-40	60.74	Translation elongation factor EF1B/ribosomal protein S6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014717	Translation elongation factor EF1B/ribosomal protein S6	GENE3D	3.30.70.60		coord: 1..117 e-value: 3.3E-17 score: 64.3
IPR000529	Ribosomal protein S6	PFAM	PF01250	Ribosomal_S6	coord: 4..95 e-value: 4.8E-16 score: 58.8
IPR000529	Ribosomal protein S6	PANTHER	PTHR21011	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6	coord: 1..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..150
None	No IPR available	PANTHER	PTHR21011:SF14	SUBFAMILY NOT NAMED	coord: 1..141
None	No IPR available	CDD	cd15465	bS6_mito	coord: 3..96 e-value: 3.09811E-25 score: 90.6697
IPR035980	Ribosomal protein S6 superfamily	SUPERFAMILY	54995	Ribosomal protein S6	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G008190.1	CmaCh06G008190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome