CmaCh06G008090 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G008090
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr06: 4285727 .. 4289313 (-)
RNA-Seq ExpressionCmaCh06G008090
SyntenyCmaCh06G008090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGTGAGTACCTGCAGAAGAAGTTCATCATGAGCTCAAATCCATACTTGCGGATCCAATCACACACAAGTAATCAAGCAGGTTATAATGCATCAATCAGGCATCCAACTGTCATATTATTTGCATAGCGACCAACGAGAGCTTCAAGCACAAGTTTTGAGTGGCTCGGGATATAATTTTGGATGTTTATCATTTCATAAGTTTCAATAACACGTGAACAATCACAACCCGCTTTTAAGCAAGCCAAGAGGGAGCTGTCAAATCTTTGGCAGGTGTTCTGATTTCATCTAACTTTGATGAATGTGGTGATTCTTCTTCTTCTTCTTCCTATTTTTAGTTTGTTTGGTGGGGGACTTTACTATTATGGAAACAGGAATTTGAGAGCAACATATGTAACAAGGTTTGAGTTTCCTCAAGTCATTCAAACCAAAGCTAGTCTTGCTTGATTACTAAACCAGCACGCACACTCAACTTTATGTTGAAAAAGAACAAAAGATTCTGGGAATAAGTCAAGTTTTAGAAATACGGGACCGAAACTATGAGATCCCACATCGGTTGGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACTTCTCCCCAGTAGACGCGTTTGAAAAACCTTGGCCTTGGGGGAAACCCAGAAGGGAAAGCCCAAAAAGAACAATATTTGCTAGCGAGGAGGTTAAGCCCCGAATGGAGGTGGACACCTGGCAGTGTGCCAGGGAGGACGCAGGGCCCCAAAGGGGGTGGATCGGGGGGTTCCACATTGATTGGAGAGAGAAACGAGTGCCAACGAGGACGTTGGGCCCTGAAAGGGGGTGGATTGTGAGATCCTACATTGGTTGGGAGGAGAACAAAACATTTTTTATAAGGGTGTGGAAATCTCTCTCTCTAGCAAACTGTGTTTTAAAAACCTTGAGGAGAAGTTTGAAAGGAAAAGTCTAAAGAGGACAATATCTGCTAGCGGTAGACTTGGACGGTTACAAAAACTTCAAATCCAGATAGTTCCAACACAACTATTTAAAAGAAATGAGAATAGAAAGAGAGAGAAGCAAAATTTTGTGTAGTGCATAATGACTATATCAGCAAGTGAGAATGAAATGAAGCAAAATTTTAAATCTTAGATTGTAGAAAGAAATCAAAATGAACTCAATACTTACAGGGGAAATACAATCTCCACACCTACACCAGCAATAATTCTTCGAATTCTAATCGTTGTGTGGATGCCAGCATTTTGTTTTGATATCACAATTCCTCTATAAACAGAAAGCCTACGCCTATTTTCTGGAACTTCCTGTGGTGGAAATAACATTTTTATTCAAAAGAAAGTTAAGATAAACCTTGCATCTTCACAAGAGTTTAAATTATAAAGATTAACAATGAGATTTACCAGTTTAATTTCCACAATATCACCAGTTCTAACGTCTGGAATGGGCCTTTCCTTCTCTGATGCCTCAACTGCCCGCTTATTAAGTATCTACAGAAGAGAAACAATGAACAAAACTAAAACCAAATTCAAACTATCCCATCACATGTTCGACTGTCACCTGCAATCTAAAATTTCACCATTGATAGCTGAAATCTTATACTAAACTGAACTGTAATGACTTCTAAAAAGCACAGAATTCAAGAGAACCAGTAACAAAACTACACTTCCAGTTGCAAGAATGGATAGAACAATTACCCCCATTACATCCCCAAGCTTAACTCGAGGTTTTCTCGGCGGTTTCACCTCCTCAGGCTGAGCATCAGATTCCACTACTCCTTCTACTTCAGCCTCGGGAGCTTCTTCCGCCGCTTCCGCTTCAGAATTTACCTCAGCTCTCACAACAAAAGTCCGTTTCACCGGCCCCGCAACGGCATGGTGAAAATGGCAGCCGATTGAACTCGAGGAAAGAGTAGAAAACGAAAGCCGGTTACCATAAATTGCGGAACGAAACCCTAATTTCCTCGGCGCGCATTGGTTGGGGGTTCTCGGAATGGAAAACACGGCCTAGAAACAAGAAGAAAATTGAGAAGGAAAATGAAGTAGAGAAGGGGAGTATTGAGAGAAAGGAAAAGGCGAAAGGAGGAAGTGTACCTGAGGGAGAATCTTGGAGGCCATTGATGAAGGAGTTGGAACTTCTGAAGCGGAGAAATGAAACAGAATTAGAGATGAAGGGAGAGAATCATGGCAGTAAGTGTGTGTTCTGGTGTGTTCTTCATCCAAGAAGAATTTGAAGCTGATCCCTTATCCACTGTGATACCACCATCACCATCTCTTGGGTTGAAATGATGCGGGTCGGTACTGGGTCGGGTCAGACCGGGTTGTCCATCTTAAAATGTTTTTGACCCTGCTATAATAGTTGTGACCGATATCTACAATAGCCAAATTGCTTCCTATTTTCTCTAGTACTTTATTAACACTATTTAGTGGTTTAGGTTGGACCTAGTAGTATCCCTACCGAGTAATAGGTAATCAAGAATCTATACGTTAAATTTAATCTAGATCGATCAAATAGGATAGCTCGTCAGGTGCCTCTTTTGTGCCTGAAAATGTGTCATTGGTCTCTCCTTAACAAGGTTGCGGCTCTGTAAATCTATCTTGAGAGGGAATGAGAGACCACACAAGTAAACTTAGTAGTTGGTCGACACATAAGGTCGCTCCTCTAAACTATTTAGCTTTATGGTTTTTGTGGAAGGGTCGCCAATTAACCTTACTCAAGGATGTTCAGATGGATGATGTCATATTGTTCTATAATATGATTAAGATGAGGTAGTACCTACAAATCTAGATAACGATGATTTATTTATGTGGCAAAGAAAGATAGTTAAAGTTTGAGGAATAGGAAAGTTGGTTCACCCTAGAGATTAGTTACGTCGTCGTCGTCGTCTAGTAGATTTATAGTGCCAGAAAATGTGAACAATCTCAAAACCCCAATTGAACACGGGTGAAATAAGCGATTGACTATGTCTTGACTCTATCGACCTGAACTAATAAAAAAAGGGTAAAAAAAAGTAAATGTGTATACGTGGAAGTGTACAAGAATGGTAGCATGGAAAATTCAATGCACTCGTAAGTAACATTTACCCTCAAAGCGTCTCTCTTCTTGCCCTTTATATGTAATCATCTTCTCCCACCTTCTTCCTCGCTTCAATCTCTCTTTCTCTTCTTTCTTGGAGCAATGGCGACCGCACGTGCCATGCTCGTGCTCGCCCTCTCTTTTTTTGCCCTTTCCTCCTCCGCCATTGCTCAAGGTCCCTCCCCTGCTCCTCTTCCGCTGCCGCCCCGCCGCGTCCATCAACCCCACCTCCGGTTGCATCACCCGCCATGTCCCCACCGGCTGCCTCACCTCCACCAATCAACTCATCTCCCCCGATGGCGGCTTCTCCGCCGTGCATGGATATGAGCTCAGTCTCAGTCCCAATGCCCGACAGCCCACCATCACTTCCAAGCCCAAGCGCGGGATTTTCCATACACCACAGCGGCTCAAGGCGGGCCTTGCGGCGGTGTTGGGTGGCATGGCCGTCGTCCTTACCCATTTATGCATTCTTTTTTCTTTTCTTTACTTTCATTAGCACCATGAGTGATTTGTAG

mRNA sequence

ATGTTTGGTGAGTACCTGCAGAAGAAGTTCATCATGAGCTCAAATCCATACTTGCGGATCCAATCACACACAAGTAATCAAGCAGTTTCAATAACACGTGAACAATCACAACCCGCTTTTAAGCAAGCCAAGAGGGAGCTGTCAAATCTTTGGCAGAACAATTACCCCCATTACATCCCCAAGCTTAACTCGAGGTTTTCTCGGCGGTTTCACCTCCTCAGGCTGAGCATCAGATTCCACTACTCCTTCTACTTCAGCCTCGGGAGCTTCTTCCGCCGCTTCCGCTTCAGAATTTACCTCAGCTCTCACAACAAAAGTCCGTTTCACCGGCCCCGCAACGGCATGAAAACGAAAGCCGGTTACCATAAATTGCGGAACGAAACCCTAATTTCCTCGGCGCGCATTGGTTGGGGGTTCTCGGAATGGAAAACACGGCCTAGAAACAAGAAGAAAATTGAGAAGGAAAATGAAGTAGAGAAGGGGAGTATTGAGAGAAAGGAAAAGGCGAAAGGAGGAAGTGTACCTGAGGGAGAATCTTGGAGGCCATTGATGAAGGAGTTGGAACTTCTGAAGCGGAGAAATGAAACAGAATTAGAGATGAAGGGAGAGAATCATGGCAGTAACAATGGCGACCGCACGTGCCATGCTCGTGCTCGCCCTCTCTTTTTTTGCCCTTTCCTCCTCCGCCATTGCTCAAGGTCCCTCCCCTGCTCCTCTTCCGCTGCCGCCCCGCCGCGTCCATCAACCCCACCTCCGGTTGCATCACCCGCCATGTCCCCACCGGCTGCCTCACCTCCACCAATCAACTCATCTCCCCCGATGGCGGCTTCTCCGCCGTGCATGGATATGAGCTCAGTCTCAGTCCCAATGCCCGACAGCCCACCATCACTTCCAAGCCCAAGCGCGGGATTTTCCATACACCACAGCGGCTCAAGGCGGGCCTTGCGGCGGTGTTGGGTGGCATGGCCGTCGTCCTTACCCATTTATGCATTCTTTTTTCTTTTCTTTACTTTCATTAGCACCATGAGTGATTTGTAG

Coding sequence (CDS)

ATGTTTGGTGAGTACCTGCAGAAGAAGTTCATCATGAGCTCAAATCCATACTTGCGGATCCAATCACACACAAGTAATCAAGCAGTTTCAATAACACGTGAACAATCACAACCCGCTTTTAAGCAAGCCAAGAGGGAGCTGTCAAATCTTTGGCAGAACAATTACCCCCATTACATCCCCAAGCTTAACTCGAGGTTTTCTCGGCGGTTTCACCTCCTCAGGCTGAGCATCAGATTCCACTACTCCTTCTACTTCAGCCTCGGGAGCTTCTTCCGCCGCTTCCGCTTCAGAATTTACCTCAGCTCTCACAACAAAAGTCCGTTTCACCGGCCCCGCAACGGCATGAAAACGAAAGCCGGTTACCATAAATTGCGGAACGAAACCCTAATTTCCTCGGCGCGCATTGGTTGGGGGTTCTCGGAATGGAAAACACGGCCTAGAAACAAGAAGAAAATTGAGAAGGAAAATGAAGTAGAGAAGGGGAGTATTGAGAGAAAGGAAAAGGCGAAAGGAGGAAGTGTACCTGAGGGAGAATCTTGGAGGCCATTGATGAAGGAGTTGGAACTTCTGAAGCGGAGAAATGAAACAGAATTAGAGATGAAGGGAGAGAATCATGGCAGTAACAATGGCGACCGCACGTGCCATGCTCGTGCTCGCCCTCTCTTTTTTTGCCCTTTCCTCCTCCGCCATTGCTCAAGGTCCCTCCCCTGCTCCTCTTCCGCTGCCGCCCCGCCGCGTCCATCAACCCCACCTCCGGTTGCATCACCCGCCATGTCCCCACCGGCTGCCTCACCTCCACCAATCAACTCATCTCCCCCGATGGCGGCTTCTCCGCCGTGCATGGATATGAGCTCAGTCTCAGTCCCAATGCCCGACAGCCCACCATCACTTCCAAGCCCAAGCGCGGGATTTTCCATACACCACAGCGGCTCAAGGCGGGCCTTGCGGCGGTGTTGGGTGGCATGGCCGTCGTCCTTACCCATTTATGCATTCTTTTTTCTTTTCTTTACTTTCATTAGCACCATGAGTGATTTGTAG

Protein sequence

MFGEYLQKKFIMSSNPYLRIQSHTSNQAVSITREQSQPAFKQAKRELSNLWQNNYPHYIPKLNSRFSRRFHLLRLSIRFHYSFYFSLGSFFRRFRFRIYLSSHNKSPFHRPRNGMKTKAGYHKLRNETLISSARIGWGFSEWKTRPRNKKKIEKENEVEKGSIERKEKAKGGSVPEGESWRPLMKELELLKRRNETELEMKGENHGSNNGDRTCHARARPLFFCPFLLRHCSRSLPCSSSAAAPPRPSTPPPVASPAMSPPAASPPPINSSPPMAASPPCMDMSSVSVPMPDSPPSLPSPSAGFSIHHSGSRRALRRCWVAWPSSLPIYAFFFLFFTFISTMSDL
Homology
[Close]
BLAST of CmaCh06G008090 vs. NCBI nr
Match: KAG6596882.1 (hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-16
Identity = 68/105 (64.76%), Postives = 70/105 (66.67%), Query Frame = 0 

Query: 238 SSSAAAPPRPSTPPPVASPAMSPPAASPPPINSSPPMAASPPCMDMSSVSVPMPDSPPSL 297
           S +AAA PRPSTP PVASPAMSPPAASPP I SSPPMAASPP M MS VSVPMPDSPPSL
Sbjct: 27  SPAAAAAPRPSTPSPVASPAMSPPAASPPLIISSPPMAASPPSMGMSPVSVPMPDSPPSL 86

Query: 298 PSP----SAGFSIHHSGSRRALRRCWVAWPSSLPIYAFFFLFFTF 339
           PSP    SAGFSIHH G +  L          L      F F  F
Sbjct: 87  PSPGPGSSAGFSIHHGGYKAGLAAVLGGMAEVLTHMCILFSFLYF 131

[Close]
BLAST of CmaCh06G008090 vs. NCBI nr
Match: XP_038903480.1 (classical arabinogalactan protein 9-like [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 8.3e-04
Identity = 52/113 (46.02%), Postives = 59/113 (52.21%), Query Frame = 0 

Query: 236 PCSSSAAAPPRPSTPPPVASPAMS-PPAASPPPINSS---------PPMAASPPCMDMSS 295
           P  +SAAAPP PS+PPPVA+P  + PPAASPPP  S+         PPM ASPP M+ S 
Sbjct: 30  PGPASAAAPP-PSSPPPVAAPPTTPPPAASPPPTISTPPAAAPPAIPPMMASPPSMESSP 89

Query: 296 VSVPMPDSPPSLPS------------------------PSAGFSIHHSGSRRA 315
              PMPDSPPS P                         PSAGFSIH  G + A
Sbjct: 90  GPGPMPDSPPSPPGPSPSPMSMSPPTPAPAPSPPSPPPPSAGFSIHQGGYKAA 141

The following BLAST results are available for this feature:
BLAST of CmaCh06G008090 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G008090 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G008090 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596882.11.9e-1664.76hypothetical protein SDJN03_10062, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038903480.18.3e-0446.02classical arabinogalactan protein 9-like [Benincasa hispida][more]
BLAST of CmaCh06G008090 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 149..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..182
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 238..303
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..274

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G008090.1CmaCh06G008090.1mRNA