CmaCh06G007570 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G007570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	40S ribosomal protein S13
Location	Cma_Chr06: 3844519 .. 3846355 (+)
RNA-Seq Expression	CmaCh06G007570
Synteny	CmaCh06G007570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAAGAGCTAGGGTTTCGTGTCTGGTCGAGAGGCAACGATAGAGAGCTTTTGCGTGCTCACCATAATCGTCAACAATGGGTCGTATGCACAGCAGAGGGTCAGTTCCTCTTCTTCTCTCTTTTCACTCTCATTCTATTTCTCATCTACCAATCCCTCCGATTCAATGACTCAATTCTTCCTCTCATTTGTGGTTGCAGAAAAGGTATTTCGGCGTCAGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTTCTCAAGATGTAAGTGCCATTATCTATAATGTTTGAGTTGCAGCATACTTCGATCGAAACGAGCAGTTATTGAATCCATGTTGTGTGTGTGGTGATTAGGTTGAGGAAAACATCTGCAAGTTTGCGAAGAAAGGTTTGACTCCGTCTCAAATCGGTGTAATTCTTCGTGATTCTCATGGTATTGCTCAGGTCAGGAGCGTTACTGGCAGCAAGATCTTGCGCATCCTTAAAGCTCATGGTATTTGCTTCTGTTGTTTCTCAATTGAAAATTATATGTTTTTTTTAACCTTAACAGTTAAAAGTATATCTGATGCTCATTCGCCAATTTGTGTTTGGTGGCATTGAATCTCCCTACTGATGTTTAATAGATTAGAAGATTAAATGTATCTTAGTCTATTGGTTTAAGCTTTTGGTGTAGTGGTAAGTTAGCGTGTATTTTGATGGCTGTGATTTGCATTGTTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCCGTCTCGATCAGAAAGCATTTGGAAAGGAACAGGAAGGACAAGGACTCGAAGTTCAGGTTGATTCTTGTCGAGAGCAGGATTCATCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTATGGAAATAGTAAGTGCTCAATGATCTGAATCTCTGTAGTTTATTTTGTTTTTATTTTTATTTTTTCATCTGTATTAGAACTTAATTAAATATGGATTGGTGTTTTAAGTATTTGAGAATTGTTGGGAGAGGAGTCTCACATCGCTGTTCGAGGGCTCCATAGGCTTTAGGGGAGGCTCTATGATGTACTTTGTTCGAGGGGAGGATTATTGAGGATTGTTGGGAGAGGAGTCCCAAATCGGCTAATTAAGGGGTTGATCATGAGGTTATAAGTAAGGAACACATCTTTATTGATATGAGGTCATTTGGTTGGCCTTTTGGGAAACCAAAAGGCAAAACCATGAGAGCTGAACTTTCCATCTTCATAGATTGTGGTGAATCTCGCCTAGCTTTAATATCATGTTAGGAATCACGGACCTCCACAATAGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGATTTTGCTTTTGGTTTCTCCAAAAGGCCCCATACCAATGGAGATATACTCCTTACTTATAAACCTATGATCAACCCCTTAATTAGTCGATGGGGGACTCCTCTCCCAACCATCCTCAATATTAAGCACTCTAATTACTAATCGTTAAAATGGAGTTAAATTTACTCTCCTTATGCAAAAAATGGAGTTAAATTTCCTCTCCTTATGCAAAGTATCGTTCGTTTTGCTTTGTGGGTCGCACTATTCTCTTCACCTAAAAGGGATTCTGGGATAATAACACATTATAATCAACTTCCAGTTATGGTTGGATGTTGAAGGATAATGAAACCTTTCTCTTGCTTTGCTATTTGAAACTTAGTTCTTATATATTAACTACTATCATCCTTCCTCCCCATTGATTGATTAACTGGTTTTTTTTCTCCTTGTTTCAGCGAGTCAACTACTGCTAGCACACTTGTCGCCTAA

mRNA sequence

GATAAGAGCTAGGGTTTCGTGTCTGGTCGAGAGGCAACGATAGAGAGCTTTTGCGTGCTCACCATAATCGTCAACAATGGGTCGTATGCACAGCAGAGGAAAAGGTATTTCGGCGTCAGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTTCTCAAGATGTTGAGGAAAACATCTGCAAGTTTGCGAAGAAAGGTTTGACTCCGTCTCAAATCGGTGTAATTCTTCGTGATTCTCATGGTATTGCTCAGGTCAGGAGCGTTACTGGCAGCAAGATCTTGCGCATCCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCCGTCTCGATCAGAAAGCATTTGGAAAGGAACAGGAAGGACAAGGACTCGAAGTTCAGGTTGATTCTTGTCGAGAGCAGGATTCATCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTATGGAAATACGAGTCAACTACTGCTAGCACACTTGTCGCCTAA

Coding sequence (CDS)

ATGGGTCGTATGCACAGCAGAGGAAAAGGTATTTCGGCGTCAGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTTCTCAAGATGTTGAGGAAAACATCTGCAAGTTTGCGAAGAAAGGTTTGACTCCGTCTCAAATCGGTGTAATTCTTCGTGATTCTCATGGTATTGCTCAGGTCAGGAGCGTTACTGGCAGCAAGATCTTGCGCATCCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCCGTCTCGATCAGAAAGCATTTGGAAAGGAACAGGAAGGACAAGGACTCGAAGTTCAGGTTGATTCTTGTCGAGAGCAGGATTCATCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTATGGAAATACGAGTCAACTACTGCTAGCACACTTGTCGCCTAA

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Homology

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BLAST of CmaCh06G007570 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 9.4e-80
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 3.7e-76
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.3e-76
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISSQDV+E ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-75
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

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BLAST of CmaCh06G007570 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.5e-69
Identity = 132/151 (87.42%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK ++ DVEE I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             V+SVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

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BLAST of CmaCh06G007570 vs. ExPASy TrEMBL
Match: A0A059CIJ2 (Ribosomal_S13_N domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02461 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.1e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. ExPASy TrEMBL
Match: A0A6J1KZP1 (40S ribosomal protein S13 OS=Cucurbita maxima OX=3661 GN=LOC111498529 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.1e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. ExPASy TrEMBL
Match: A0A6J1FT59 (40S ribosomal protein S13 OS=Cucurbita moschata OX=3662 GN=LOC111448238 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 4.1e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. ExPASy TrEMBL
Match: A0A1U8I574 (40S ribosomal protein S13-like OS=Gossypium hirsutum OX=3635 GN=LOC107890823 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.2e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. ExPASy TrEMBL
Match: A0A5D2BF22 (Ribosomal_S13_N domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES288_A09G210800v1 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 9.2e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. NCBI nr
Match: XP_010053901.1 (40S ribosomal protein S13 [Eucalyptus grandis] >XP_022943482.1 40S ribosomal protein S13 [Cucurbita moschata] >XP_023005589.1 40S ribosomal protein S13 [Cucurbita maxima] >XP_023539007.1 40S ribosomal protein S13 [Cucurbita pepo subsp. pepo] >XP_023539008.1 40S ribosomal protein S13 [Cucurbita pepo subsp. pepo] >KAG6596840.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028367.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KCW78278.1 hypothetical protein EUGRSUZ_D02461 [Eucalyptus grandis])

HSP 1 Score: 300.4 bits (768), Expect = 8.5e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. NCBI nr
Match: XP_010053902.1 (40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal protein S13 [Eucalyptus grandis] >XP_030468523.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030468524.1 40S ribosomal protein S13 [Syzygium oleosum] >XP_030529924.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030529925.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_030544418.1 40S ribosomal protein S13 [Rhodamnia argentea] >XP_031376603.1 40S ribosomal protein S13 [Punica granatum] >XP_031381691.1 40S ribosomal protein S13 [Punica granatum] >KAF3439993.1 hypothetical protein FNV43_RR18271 [Rhamnella rubrinervis] >KAF8020424.1 hypothetical protein BT93_G0976 [Corymbia citriodora subsp. variegata] >PON34614.1 Ribosomal protein [Parasponia andersonii] >KAF3440239.1 hypothetical protein FNV43_RR18522 [Rhamnella rubrinervis] >KAF8020425.1 hypothetical protein BT93_G0977 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. NCBI nr
Match: KAF3433118.1 (hypothetical protein FNV43_RR24220 [Rhamnella rubrinervis])

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 106 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 165

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 166 AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 225

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 226 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 256

[Close]

BLAST of CmaCh06G007570 vs. NCBI nr
Match: XP_017441415.1 (PREDICTED: 40S ribosomal protein S13 [Vigna angularis] >BAT97743.1 hypothetical protein VIGAN_09127500 [Vigna angularis var. angularis])

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. NCBI nr
Match: XP_012486462.1 (PREDICTED: 40S ribosomal protein S13 [Gossypium raimondii] >XP_016670884.1 40S ribosomal protein S13 isoform X1 [Gossypium hirsutum] >XP_016717229.1 40S ribosomal protein S13 [Gossypium hirsutum] >XP_017616763.1 PREDICTED: 40S ribosomal protein S13-like [Gossypium arboreum] >KAB2013992.1 hypothetical protein ES319_D09G193900v1 [Gossypium barbadense] >TYG54703.1 hypothetical protein ES288_D09G211500v1 [Gossypium darwinii] >TYH54987.1 hypothetical protein ES332_D09G207300v1 [Gossypium tomentosum] >TYI66080.1 hypothetical protein E1A91_D09G199900v1 [Gossypium mustelinum] >KAB2066862.1 hypothetical protein ES319_A09G187600v1 [Gossypium barbadense])

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 285.4 bits (729), Expect = 2.6e-77
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmaCh06G007570 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-76
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:

BLAST of CmaCh06G007570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	9.4e-80	98.68	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59224	3.7e-76	94.04	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P46298	6.3e-76	94.04	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59223	1.4e-75	93.38	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
Q69UI1	1.5e-69	87.42	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of CmaCh06G007570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A059CIJ2	4.1e-78	100.00	Ribosomal_S13_N domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGR...	[more]
A0A6J1KZP1	4.1e-78	100.00	40S ribosomal protein S13 OS=Cucurbita maxima OX=3661 GN=LOC111498529 PE=3 SV=1	[more]
A0A6J1FT59	4.1e-78	100.00	40S ribosomal protein S13 OS=Cucurbita moschata OX=3662 GN=LOC111448238 PE=3 SV=...	[more]
A0A1U8I574	9.2e-78	99.34	40S ribosomal protein S13-like OS=Gossypium hirsutum OX=3635 GN=LOC107890823 PE=...	[more]
A0A5D2BF22	9.2e-78	99.34	Ribosomal_S13_N domain-containing protein OS=Gossypium darwinii OX=34276 GN=ES28...	[more]

BLAST of CmaCh06G007570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_010053901.1	8.5e-78	100.00	40S ribosomal protein S13 [Eucalyptus grandis] >XP_022943482.1 40S ribosomal pro...	[more]
XP_010053902.1	1.9e-77	99.34	40S ribosomal protein S13 [Eucalyptus grandis] >XP_010066926.1 40S ribosomal pro...	[more]
KAF3433118.1	1.9e-77	99.34	hypothetical protein FNV43_RR24220 [Rhamnella rubrinervis]	[more]
XP_017441415.1	1.9e-77	99.34	PREDICTED: 40S ribosomal protein S13 [Vigna angularis] >BAT97743.1 hypothetical ...	[more]
XP_012486462.1	1.9e-77	99.34	PREDICTED: 40S ribosomal protein S13 [Gossypium raimondii] >XP_016670884.1 40S r...	[more]

BLAST of CmaCh06G007570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	2.6e-77	94.04	ribosomal protein S13A	[more]
AT3G60770.1	1.0e-76	93.38	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..60 e-value: 5.3E-40 score: 148.9
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 1..60 e-value: 1.3E-31 score: 108.5
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 70..149 e-value: 2.9E-15 score: 66.7
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 74..145 e-value: 4.7E-15 score: 55.5
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 98..128
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 70..143 e-value: 8.16304E-27 score: 94.107
None	No IPR available	GENE3D	1.10.287.10		coord: 83..151 e-value: 8.8E-41 score: 140.1
None	No IPR available	GENE3D	4.10.860.130		coord: 35..82 e-value: 4.5E-29 score: 101.9
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 1..151
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 1..151
IPR023029	Ribosomal protein S15P	HAMAP	MF_01343_A	Ribosomal_S15_A	coord: 3..149 score: 32.128017
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 66..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G007570.1	CmaCh06G007570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome