CmaCh06G006300 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G006300
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr06: 3089017 .. 3089361 (-)
RNA-Seq ExpressionCmaCh06G006300
SyntenyCmaCh06G006300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAGGTTCTTTCAGCGCGAAGGTCTAATGGCTTCAACGAGGTTTGCCTGTGCTCAAACCCTATCGAAAACCTCGAATTCTCTTCTCCGATCTTCTCTTTTAGCCCTAATGGCGTCGAATTCGCTTCCAACTTCTCGTTTAGGTTACCGTTTTACTCGCAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTATGAGGTACTTCTTCTTAGATGGTTTGTGTTTTTTGTGATGCAAACTTAGGACTGATCTGATATTTCAGGATTTTTTAATGGAAGTGTTTATTGGAAGACATTTTCGCATTGCCTTCCGAAAGCGAGAAGGATTACATCTGAACTGA

mRNA sequence

TTAGGTTCTTTCAGCGCGAAGGTCTAATGGCTTCAACGAGGTTTGCCTGTGCTCAAACCCTATCGAAAACCTCGAATTCTCTTCTCCGATCTTCTCTTTTAGCCCTAATGGCGTCGAATTCGCTTCCAACTTCTCGTTTAGGTTACCGTTTTACTCGCAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTATGAGGATTTTTTAATGGAAGTGTTTATTGGAAGACATTTTCGCATTGCCTTCCGAAAGCGAGAAGGATTACATCTGAACTGA

Coding sequence (CDS)

ATGGCTTCAACGAGGTTTGCCTGTGCTCAAACCCTATCGAAAACCTCGAATTCTCTTCTCCGATCTTCTCTTTTAGCCCTAATGGCGTCGAATTCGCTTCCAACTTCTCGTTTAGGTTACCGTTTTACTCGCAACTGCTCCTCCAGCACCGCTCCAGTTCGCACTTTGGATTATGAGGATTTTTTAATGGAAGTGTTTATTGGAAGACATTTTCGCATTGCCTTCCGAAAGCGAGAAGGATTACATCTGAACTGA

Protein sequence

MASTRFACAQTLSKTSNSLLRSSLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEDFLMEVFIGRHFRIAFRKREGLHLN
Homology
[Close]
BLAST of CmaCh06G006300 vs. NCBI nr
Match: KAG7028255.1 (hypothetical protein SDJN02_09436 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 4.5e-20
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 0 

Query: 1  MASTRFACAQTLSKTSNSLLRSSLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYED 60
          MASTRF CAQTLSKTSNSLLRS LLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYE 
Sbjct: 1  MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYEV 60

Query: 61 FLME 65
          + +E
Sbjct: 61 YSIE 64

[Close]
BLAST of CmaCh06G006300 vs. NCBI nr
Match: KAG6596718.1 (hypothetical protein SDJN03_09898, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0 

Query: 1  MASTRFACAQTLSKTSNSLLRSSLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYE 60
          MASTRF CAQTLSKTSNSLLRS LLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYE
Sbjct: 1  MASTRFPCAQTLSKTSNSLLRSYLLALMASNSLPTSRLGYRFTRNCSSSTAPVRTLDYE 59

The following BLAST results are available for this feature:
BLAST of CmaCh06G006300 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G006300 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G006300 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028255.14.5e-2090.63hypothetical protein SDJN02_09436 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6596718.11.3e-1996.61hypothetical protein SDJN03_09898, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh06G006300 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G006300.1CmaCh06G006300.1mRNA