CmaCh06G005230 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G005230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr06: 2438615 .. 2439310 (+)
RNA-Seq ExpressionCmaCh06G005230
SyntenyCmaCh06G005230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTCTTAACTTCTACTAATCACTTTGTTACTAACAATAATAGTGTTATAATACCTCTGAGCACCTCATGGACTCTGATTCACATATCATACAATATCAGTATTTTCCATGAATTAGTATGCTCAGAATTAGAAGAGGACGCAGCCTGCTTGCTATATTGTACTGCTGTTGTTGATTCACTAGCCCGTGCATTATATTTCATTTCAGGTGCCACACGCTCATTTGCAAATTGCTGCACTGCGTTGCAACAAGTACATTAGAGGAGTGGTATTCAGAATATTCAGAGGAGGCAATGATAATGTCAAAAGAACCATCCAATTTCTGAGGTGGTTATTTTTATGCTGGCTCAAGTGGCTTGTCATCTTGAAGGGAAGAAAATGTCATTCATTTGCATCGATTTGAGCAGTTGCTAGCTCCTTCATACGTTTGATCACAGAAACATGTGTATCTTTGCCCTTCAGATTGATGTTAGAATGATAATAAGTTCGGTGTTGGGTGCACGGCCATTTAGGTAAGTGCTTCATCATTTACTTATTCTAAAATTATCTTGTACTCTACTAATTTCCCCTCTTCCACCTAACTTTGCCGTCAATATTTGCTTATTATTTCAGTTAGCAACAAAATTTGGAAATGCGATATTTTGTATTAGATGTGGGACTATGATAGTACATCATAATTTCAATGATATGTGA

mRNA sequence

ATGTTTTTCTTAACTTCTACTAATCACTTTGTTACTAACAATAATAGTGTTATAATACCTCTGAGCACCTCATGGACTCTGATTCACATATCATACAATATCAGTATTTTCCATGAATTAGTGCCACACGCTCATTTGCAAATTGCTGCACTGCGTTGCAACAAGTACATTAGAGGAGTGGTATTCAGAATATTCAGAGGAGGCAATGATAATGTCAAAAGAACCATCCAATTTCTGAGGTGGTTATTTTTATGCTGGCTCAAGTGGCTTGTCATCTTGAAGGGAAGAAAATTGCTTCATCATTTACTTATTCTAAAATTATCTTGTACTCTACTAATTTCCCCTCTTCCACCTAACTTTGCCGTCAATATTTGCTTATTATTTCAGTTAGCAACAAAATTTGGAAATGCGATATTTTGTATTAGATGTGGGACTATGATAGTACATCATAATTTCAATGATATGTGA

Coding sequence (CDS)

ATGTTTTTCTTAACTTCTACTAATCACTTTGTTACTAACAATAATAGTGTTATAATACCTCTGAGCACCTCATGGACTCTGATTCACATATCATACAATATCAGTATTTTCCATGAATTAGTGCCACACGCTCATTTGCAAATTGCTGCACTGCGTTGCAACAAGTACATTAGAGGAGTGGTATTCAGAATATTCAGAGGAGGCAATGATAATGTCAAAAGAACCATCCAATTTCTGAGGTGGTTATTTTTATGCTGGCTCAAGTGGCTTGTCATCTTGAAGGGAAGAAAATTGCTTCATCATTTACTTATTCTAAAATTATCTTGTACTCTACTAATTTCCCCTCTTCCACCTAACTTTGCCGTCAATATTTGCTTATTATTTCAGTTAGCAACAAAATTTGGAAATGCGATATTTTGTATTAGATGTGGGACTATGATAGTACATCATAATTTCAATGATATGTGA

Protein sequence

MFFLTSTNHFVTNNNSVIIPLSTSWTLIHISYNISIFHELVPHAHLQIAALRCNKYIRGVVFRIFRGGNDNVKRTIQFLRWLFLCWLKWLVILKGRKLLHHLLILKLSCTLLISPLPPNFAVNICLLFQLATKFGNAIFCIRCGTMIVHHNFNDM
Homology
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BLAST of CmaCh06G005230 vs. NCBI nr
Match: KAG6596615.1 (Mediator of RNA polymerase II transcription subunit 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-11
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0 

Query: 57  IRGVVFRIFRGGNDNVKRTIQFLRWLFLCWLKWLVILK 95
           + GVVFRIFRGGNDNVKRTIQFLRWLFLCWLKWLVILK
Sbjct: 420 LEGVVFRIFRGGNDNVKRTIQFLRWLFLCWLKWLVILK 457

The following BLAST results are available for this feature:
BLAST of CmaCh06G005230 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G005230 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G005230 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596615.11.9e-1194.74Mediator of RNA polymerase II transcription subunit 27, partial [Cucurbita argyr... [more]
BLAST of CmaCh06G005230 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G005230.1CmaCh06G005230.1mRNA