CmaCh06G003990 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G003990
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr06: 1849198 .. 1850789 (+)
RNA-Seq ExpressionCmaCh06G003990
SyntenyCmaCh06G003990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGCAAGACCAGCAGATCTCTGTGGCCCTGAAAGCAGTGGACGCTGTCAATGTCGATTAAAGGAAGCTATGACTTCAATCGGTCAGATAAAAGAATATCTTAAACTCTCATCACTAATACCCATCAATACAGTTCCATTTTGTCAGTGCATACTTTCTGAATAATTTAGCTGGATGGCTGGAATATGTTTCCTGGTTTGTAGTTAATCAATGCTTGTGGAATCTCTGGTAAGAAACAGATGAAATTGGCGTAGACCATGGTTTAATTCACTGATGCCTTAAACTTTTTTGTTCCCAAAAGAACTTTTAACTTCCTTGTCTGCCTTACGTTGTGAAGTTCTTGGAGCAAGCTTACTAAGATAGTGTTGCCTCTGTCCTTTAAATGTACGCATGGCCCATTGACGAATTATGTTCACCATTCTAATATCTGACAAAATTTGGCCTTTGGATTCCAGAATGGGAAAGGAAACAGGTGTTTTAACTATAGTGGGGACAAATACTTGAACAGCATATTGTTCTAAGCTTCTAGCCAGCTGTAGAAGTAGAAATCCAGTGGTGAAAGTGAAACTTCTGTAATGAAGGAAGTTGGAAGCATGGCTGCATGACAAATCATGATAAGAGGTAATTGGATCTTATCATCTTAACTGCACTATGAAACAAGAACATATGAATTATGACATGTCTCTCGGGCTCTCTAGGATCTGGTCTCGGCCTCGTTTAGTTAGTGGGTAGACATCTTTCTCGTTCCCTCCCTCATTCTTCATTTAAATGGTAATTCTCTACTTCATTTAGAGCAGGTCTTCACAAGCTTAATGAACATTGTCGTGTTCATGATACTTTCATGGATTTGTTCTAGGGTATTGTTTTGTATCATACCATGGAACTTGTGTGTGCGCGTATATATTAACCGAACTTTTGAGTACAATAACATAGGAACATGAGGTGGATTATTGAACCCTTTTGAGAGACAAATTGCAACACGTGGAATGATTTTTGCTTTCTTTTTTGAAACTAAATAGTAGAATGAAGTGTGGTGAGAAAAGATGGAATGGCAGCTTTGTCTTTGTCTGATAAAGAAAAAAAACCCACTTTTAATACCCTCCATTTTCCCACTTCTTTCTAGACTTAGAAAAAGAAGCTTCAATTCAAGATCCTATCATTTCCTTTATACCCAAATTATGGACCATTTTCAATATTCTACCATACAACTTTGAATTTTGCATTCAATTATTCAACATCTTCAAAATCGAAACCCACCTTTTCAACGTGTCCGAACATATGTCGTCGATTAATTTACTAACACGAGTTTGTTGTTGACACATGGGATTCGACTCTCAAATTAGTAAATTTGATTTGTTGACATGATTAATCTAATTCTACTAATACTCTGCACATCATCTTCAGAGTTTGTGAAAGGTCACTTTTGTTAATTGTTTCGAACTTGAGATTTATGTCTAATAGATCTTTGACCCGTTATTTATTTTATTTTATTTTTTATAAGGGATGAATTGAAAACAAAATTGAGCACCATTTGGGATAGCACTTGGCCAAGTGGTGGCAAGGAAAGCAACCTTTTAGATTCAAATTAG

mRNA sequence

ATGTCAGCAAGACCAGCAGATCTCTGTGGCCCTGAAAGCAGTGGACGCTGTCAATGTCGATTAAAGGAAGCTATGACTTCAATCGGAAGTTGGAAGCATGGCTGCATGACAAATCATGATAAGAGGGATGAATTGAAAACAAAATTGAGCACCATTTGGGATAGCACTTGGCCAAGTGGTGGCAAGGAAAGCAACCTTTTAGATTCAAATTAG

Coding sequence (CDS)

ATGTCAGCAAGACCAGCAGATCTCTGTGGCCCTGAAAGCAGTGGACGCTGTCAATGTCGATTAAAGGAAGCTATGACTTCAATCGGAAGTTGGAAGCATGGCTGCATGACAAATCATGATAAGAGGGATGAATTGAAAACAAAATTGAGCACCATTTGGGATAGCACTTGGCCAAGTGGTGGCAAGGAAAGCAACCTTTTAGATTCAAATTAG

Protein sequence

MSARPADLCGPESSGRCQCRLKEAMTSIGSWKHGCMTNHDKRDELKTKLSTIWDSTWPSGGKESNLLDSN
Homology
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BLAST of CmaCh06G003990 vs. NCBI nr
Match: KAG7028037.1 (hypothetical protein SDJN02_09217 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 1  MSARPADLCGPESSGRCQCRLKEAMTSIGSWK 33
          MS RPADLCGPESSGRC+C+LKEAMTSIG  K
Sbjct: 18 MSTRPADLCGPESSGRCRCQLKEAMTSIGQIK 49

The following BLAST results are available for this feature:
BLAST of CmaCh06G003990 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G003990 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G003990 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028037.16.9e-0684.38hypothetical protein SDJN02_09217 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmaCh06G003990 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G003990.1CmaCh06G003990.1mRNA