CmaCh06G001800 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G001800
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr06: 920748 .. 922134 (+)
RNA-Seq ExpressionCmaCh06G001800
SyntenyCmaCh06G001800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTATGAACCTTGTATTAATATCTATGCATATAAACACATTTACATTTGAGGCATTGCCACATATGGTCATGAATATTTTGGCAAGAATTCGGCTTTGTCAATTTGTTATTTGAATTCAAACTACATTTAGATGATATTTATTCGGCTGGAGGCCCACGATGACTGTATGTTCTAACCTCATCAACATCATCCTTTGTCACTTTGTTGTTGATCATTCCTCAATTTTGCCTCTCTATTTTCTTTTCAGGGTATCAAATCTTGCATTATGAGATCCCACGTTGAAGAGAGGAACGAAACATTTAAAATAGGTTTTAAAATCTTGAAGGGAAACTCAAAATCTAAAGAGAACAATATCTAGTAGTGGTGGACTTGGGTTGTTACAAATGGTATTAAAGTCAAACACCAAGCAGTGTGCGAGCGAACGTTGGGCCTTCAAGGAGTGGATTGTGAGATCTCACATTAGTTGGAGAGGGGAACGAAACATTCCTGGCTCTCAAGGGAGTGGATTGTGAGGCTCTCAAGGGAGTGGATTGTGAGATCTTGCATCGGTTGGAAAAAGAGACAACATCTACTAGAGATGAGTTTGAGTTCTTACATGCATAATATGTAAGCTTCGATGTTATAGTTTCCTTTCTAATTATACTTGTACATGCCCTAGTTTCTCCCAACGTGCATGCATATGCTCCATACTTCAAGGCTTCTTATTGTTAACTATGTCCATTTGATGGCTATGTGACGTGCTAGTTGTCATTGAAGGTTTATGCTCAAATCGCTTGAAATTACCCTATCATGTATTCCTAACATATAATAAATACACCTAATAAACACAATTTTGGAAGCTATTTAAAACTTTTCAAAATATAAAAGCTAAATAGATAATGATATTAAACACTCTTCAATGTCAAGCTTGACGCTAGAAATGTGATAAAGTACCTCAAACACTAGTTTGTCAAAATTGAAGAAACGTAACATTTTTTTGGTAGCGTTGAGACATTGTCTTTATGGTCTCATCGATACTCAGTATATATGCACCTCTCGTGAATCGAAGAAATGGAACCATAGATCTTTTACATAGGGCGTTAATACGAGCCAACTTCAAGTGGATGACGGTTATATTAATGTAATATTGATGGGTGCTCGTTCTTCCAAAAATAAAATTAAAAAGAAGAAAAAAAACTAGAAACATGGAAGTGTGAAAGAACAAGAACCTACCAAAGGAAGCCATAGTAATTCCTTCTCTAATTCACATCCCTCCCGTCTAGTTATGTGAATTGCGGTGTAAAGGGCGATAGGACCCCTAATATTCCGGGAAGGGAGGTTAGTGATCGTTGGTTAACAAACGCCACGGCTTTAATTCTTTTCTTATTCTATGATCATGATTAA

mRNA sequence

ATGATTATGAACCTTGTATTAATATCTATGCATATAAACACATTTACATTTGAGGCATTGCCACATATGGTCATGAATATTTTGGCAAGAATTCGGCTTTGTCAATTTGGCGATAGGACCCCTAATATTCCGGGAAGGGAGGTTAGTGATCGTTGGTTAACAAACGCCACGGCTTTAATTCTTTTCTTATTCTATGATCATGATTAA

Coding sequence (CDS)

ATGATTATGAACCTTGTATTAATATCTATGCATATAAACACATTTACATTTGAGGCATTGCCACATATGGTCATGAATATTTTGGCAAGAATTCGGCTTTGTCAATTTGGCGATAGGACCCCTAATATTCCGGGAAGGGAGGTTAGTGATCGTTGGTTAACAAACGCCACGGCTTTAATTCTTTTCTTATTCTATGATCATGATTAA

Protein sequence

MIMNLVLISMHINTFTFEALPHMVMNILARIRLCQFGDRTPNIPGREVSDRWLTNATALILFLFYDHD
Homology
[Close]
BLAST of CmaCh06G001800 vs. NCBI nr
Match: KAG6596297.1 (Serine/threonine-protein phosphatase PP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0 

Query: 38  DRTPNIPGREVSDRWLTNATALILFLFYDHD 69
           DRTPNIPGREVSDRWLTNATALILFLFYDHD
Sbjct: 179 DRTPNIPGREVSDRWLTNATALILFLFYDHD 209

[Close]
BLAST of CmaCh06G001800 vs. NCBI nr
Match: KAG7027849.1 (Serine/threonine-protein phosphatase PP1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.6 bits (174), Expect = 2.9e-09
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 37 GDRTPNIPGREVSDRWLTNATALILFLFYDHD 69
          GDRTPNIPGREVSDRWLTNATALI FLFYDHD
Sbjct: 1  GDRTPNIPGREVSDRWLTNATALIHFLFYDHD 32

The following BLAST results are available for this feature:
BLAST of CmaCh06G001800 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G001800 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh06G001800 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6596297.12.9e-09100.00Serine/threonine-protein phosphatase PP1, partial [Cucurbita argyrosperma subsp.... [more]
KAG7027849.12.9e-0996.88Serine/threonine-protein phosphatase PP1, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of CmaCh06G001800 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G001800.1CmaCh06G001800.1mRNA