CmaCh06G001210 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G001210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	3-dehydroquinate synthase
Location	Cma_Chr06: 639843 .. 640329 (+)
RNA-Seq Expression	CmaCh06G001210
Synteny	CmaCh06G001210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAAATTACCAATCTAAGGCCATTAGAAACCGGATACGGTGGATGGAGAGGCTGTACTCGAGTAGTATCTACATTTTACTCCATATATACAAATTCTAAATGTCATTTGGATCGGGTCTTTTTTTGCCAATTTTTAGGTAATCGCAGTTAACATGTCATATTATCTTGGATGGATCAACGATACGATCGTAGAGTTCTTGTCATTCTAAAACAGGCTAACTTACTTACTGCACCTTAAAGCTTGACAGTCGAGATGTTTAAATCGATAATGTTGATAAGCGATTCACAATTTTCTTCTCCACCACTTTTGTGTTCTTGTGTCTTTGGTATACTGAGCATTATCGGGACGACAGGTAGACAAGAAGGTTGCTGACGGGCTACTAAGGCTAATTCTCTTGAAAGATCCTCGAAACTACTTGTTCACTGGCGATTATGATTGGAAGGTGTTGGACGACACGCTTCGTTCGTTTTGCAAGTCTTGA

mRNA sequence

ATGAAAAAAATTACCAATCTAAGGCCATTAGAAACCGGATACGGTGGATGGAGAGGCTGTACTCGAGTAGTAATCGCAGTTAACATGTCATATTATCTTGGATGGATCAACGATACGATCGTAGACAAGAAGGTTGCTGACGGGCTACTAAGGCTAATTCTCTTGAAAGATCCTCGAAACTACTTGTTCACTGGCGATTATGATTGGAAGGTGTTGGACGACACGCTTCGTTCGTTTTGCAAGTCTTGA

Coding sequence (CDS)

ATGAAAAAAATTACCAATCTAAGGCCATTAGAAACCGGATACGGTGGATGGAGAGGCTGTACTCGAGTAGTAATCGCAGTTAACATGTCATATTATCTTGGATGGATCAACGATACGATCGTAGACAAGAAGGTTGCTGACGGGCTACTAAGGCTAATTCTCTTGAAAGATCCTCGAAACTACTTGTTCACTGGCGATTATGATTGGAAGGTGTTGGACGACACGCTTCGTTCGTTTTGCAAGTCTTGA

Protein sequence

MKKITNLRPLETGYGGWRGCTRVVIAVNMSYYLGWINDTIVDKKVADGLLRLILLKDPRNYLFTGDYDWKVLDDTLRSFCKS

Homology

[Close]

BLAST of CmaCh06G001210 vs. ExPASy Swiss-Prot
Match: U3KRF2 (3-dehydroquinate synthase, chloroplastic OS=Actinidia chinensis var. chinensis OX=1590841 GN=DHQS PE=1 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-14
Identity = 49/111 (44.14%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 10  LETGYG------GWRGCTRVVIAVNMSYYLGWINDTI----------------------- 69
           +ETG+G      G      +V+AV+MSY LGWI+++I                       
Sbjct: 335 IETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDESIVNRAHNILQQAKLPTAPPETMTV 394

Query: 70  --------VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
                   VDKKVADGLLRLILLK P  N +FTGDYD K LD+TL +FCKS
Sbjct: 395 EMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLHAFCKS 445

[Close]

BLAST of CmaCh06G001210 vs. ExPASy Swiss-Prot
Match: Q8VYV7 (3-dehydroquinate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DHQS PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-12
Identity = 48/106 (45.28%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AV+MSY LGWI+++I                            
Sbjct: 337 GYGEWLHGEAVAAGTVMAVDMSYRLGWIDESIVKRVNKILVRAKLPTTPPESMTVSMFKS 396

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD + LD TLR+F KS
Sbjct: 397 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDREALDATLRAFSKS 442

[Close]

BLAST of CmaCh06G001210 vs. ExPASy Swiss-Prot
Match: Q8RU74 (3-dehydroquinate synthase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DHQS PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.6e-11
Identity = 46/106 (43.40%), Postives = 54/106 (50.94%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AV+MS  LGWI+D++                            
Sbjct: 337 GYGQWLHGEAVAAGTVMAVDMSRRLGWIDDSLVQRVQKILQQAKLPTSPPETMTVEMFKS 396

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADG LRLILLK    N +FTGDYD K LD+TLR+F KS
Sbjct: 397 IMAVDKKVADGKLRLILLKGSLGNCVFTGDYDQKALDETLRAFSKS 442

[Close]

BLAST of CmaCh06G001210 vs. ExPASy Swiss-Prot
Match: A4XPQ2 (3-dehydroquinate synthase OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=aroB PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.2e-05
Identity = 36/103 (34.95%), Postives = 44/103 (42.72%), Query Frame = 0


Query: 11  ETGYGGWRGCTRV----VIAVNMSYYLGWIN----------------------------- 70
           E GYG W     V    V+A+ MS+ LGWI+                             
Sbjct: 254 EQGYGVWLHGEAVAAGTVMALEMSHRLGWISVAERDRGVRLLQAAGLPIVPPRDMTPAQF 313

Query: 71  --DTIVDKKVADGLLRLILLKDPRNYLFTGDYDWKVLDDTLRS 79
                VDKKV DG LRL+LLK     + T DY  ++LD TLRS
Sbjct: 314 LEHMAVDKKVLDGQLRLVLLKRLGEAVVTADYPREILDATLRS 356

[Close]

BLAST of CmaCh06G001210 vs. ExPASy Swiss-Prot
Match: A6VDF9 (3-dehydroquinate synthase OS=Pseudomonas aeruginosa (strain PA7) OX=381754 GN=aroB PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.1e-05
Identity = 33/103 (32.04%), Postives = 46/103 (44.66%), Query Frame = 0


Query: 11  ETGYGGWRGCTRV----VIAVNMSYYLGWIN----------------------------- 70
           + GYG W     V    V+A+ MS+ LGW++                             
Sbjct: 254 QQGYGVWLHGEAVGAGTVMALEMSHRLGWLSAAERDRGIRLLRRAGLPVVPPADMTAEDF 313

Query: 71  --DTIVDKKVADGLLRLILLKDPRNYLFTGDYDWKVLDDTLRS 79
                VDKKV DG LRL+LL+   N + TGD+  ++LD TLR+
Sbjct: 314 MEHMAVDKKVLDGRLRLVLLQGLGNAVVTGDFPREILDATLRT 356

[Close]

BLAST of CmaCh06G001210 vs. ExPASy TrEMBL
Match: A0A5D3CLW2 (3-dehydroquinate synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00590 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 54/106 (50.94%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AVNMSY LGWI+DTI                            
Sbjct: 272 GYGQWLHGEAVAVGTVMAVNMSYRLGWIDDTIVSRVLAILKQAKLPTAPPESMTVEMFKS 331

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD K LD+TLRSFCKS
Sbjct: 332 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLRSFCKS 377

[Close]

BLAST of CmaCh06G001210 vs. ExPASy TrEMBL
Match: A0A1S3BJA4 (3-dehydroquinate synthase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490680 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 54/106 (50.94%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AVNMSY LGWI+DTI                            
Sbjct: 347 GYGQWLHGEAVAVGTVMAVNMSYRLGWIDDTIVSRVLAILKQAKLPTAPPESMTVEMFKS 406

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD K LD+TLRSFCKS
Sbjct: 407 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLRSFCKS 452

[Close]

BLAST of CmaCh06G001210 vs. ExPASy TrEMBL
Match: A0A0A0L1L7 (DHQ_synthase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002680 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.3e-13
Identity = 53/106 (50.00%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AV+MSY LGWI+DTI                            
Sbjct: 347 GYGQWLHGEAVAVGTVMAVDMSYRLGWIDDTIVSRVLAILKQAKLPIAPPESMTVEMFKS 406

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD K LD+TLRSFCKS
Sbjct: 407 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLRSFCKS 452

[Close]

BLAST of CmaCh06G001210 vs. ExPASy TrEMBL
Match: A0A346I7J5 (3-dehydroquinate synthase OS=Senna obtusifolia OX=346985 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.6e-13
Identity = 52/106 (49.06%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AV+MSY LGWI+D++                            
Sbjct: 353 GYGQWLHGEAVAAGTVMAVDMSYRLGWIDDSVVKRVHAILKQANLPTAPPETMTVDVFKS 412

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD K LDDTLRSFCKS
Sbjct: 413 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLRSFCKS 458

[Close]

BLAST of CmaCh06G001210 vs. ExPASy TrEMBL
Match: A0A067JJD2 (DHQ_synthase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_25385 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.3e-13
Identity = 52/111 (46.85%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 10  LETGYG------GWRGCTRVVIAVNMSYYLGWINDTI----------------------- 69
           +ETG+G      G      +V+AV+MSY LGWI+D+I                       
Sbjct: 334 IETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTV 393

Query: 70  --------VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
                   VDKKVADGLLRLILLK P  N +FTGDYD K LDDTLR+FCKS
Sbjct: 394 EMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLRAFCKS 444

[Close]

BLAST of CmaCh06G001210 vs. NCBI nr
Match: KAA0052950.1 (3-dehydroquinate synthase [Cucumis melo var. makuwa] >TYK11406.1 3-dehydroquinate synthase [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 54/106 (50.94%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AVNMSY LGWI+DTI                            
Sbjct: 272 GYGQWLHGEAVAVGTVMAVNMSYRLGWIDDTIVSRVLAILKQAKLPTAPPESMTVEMFKS 331

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD K LD+TLRSFCKS
Sbjct: 332 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLRSFCKS 377

[Close]

BLAST of CmaCh06G001210 vs. NCBI nr
Match: XP_008448531.1 (PREDICTED: 3-dehydroquinate synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 54/106 (50.94%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AVNMSY LGWI+DTI                            
Sbjct: 347 GYGQWLHGEAVAVGTVMAVNMSYRLGWIDDTIVSRVLAILKQAKLPTAPPESMTVEMFKS 406

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD K LD+TLRSFCKS
Sbjct: 407 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLRSFCKS 452

[Close]

BLAST of CmaCh06G001210 vs. NCBI nr
Match: XP_004146151.1 (3-dehydroquinate synthase, chloroplastic [Cucumis sativus] >KGN55648.1 hypothetical protein Csa_010167 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 8.9e-13
Identity = 53/106 (50.00%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AV+MSY LGWI+DTI                            
Sbjct: 347 GYGQWLHGEAVAVGTVMAVDMSYRLGWIDDTIVSRVLAILKQAKLPIAPPESMTVEMFKS 406

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD K LD+TLRSFCKS
Sbjct: 407 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDETLRSFCKS 452

[Close]

BLAST of CmaCh06G001210 vs. NCBI nr
Match: AXP11715.1 (3-dehydroquinate synthase [Senna obtusifolia] >KAF7809634.1 3-dehydroquinate synthase [Senna tora])

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 52/106 (49.06%), Postives = 58/106 (54.72%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AV+MSY LGWI+D++                            
Sbjct: 353 GYGQWLHGEAVAAGTVMAVDMSYRLGWIDDSVVKRVHAILKQANLPTAPPETMTVDVFKS 412

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD K LDDTLRSFCKS
Sbjct: 413 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLRSFCKS 458

[Close]

BLAST of CmaCh06G001210 vs. NCBI nr
Match: XP_027361769.1 (3-dehydroquinate synthase, chloroplastic [Abrus precatorius])

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 51/107 (47.66%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 12  TGYGGW----RGCTRVVIAVNMSYYLGWINDTI--------------------------- 71
           +GYG W         +V+AV+MSY LGWI+D+I                           
Sbjct: 328 SGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVQDILKQAKLPTAPPEIMTVDMFK 387

Query: 72  ----VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
               VDKKVADGLLRLILLK P  N +FTGDYD K LDDTLR+FCKS
Sbjct: 388 SIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKTLDDTLRAFCKS 434

[Close]

BLAST of CmaCh06G001210 vs. TAIR 10
Match: AT5G66120.1 (3-dehydroquinate synthase, putative )

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-13
Identity = 48/106 (45.28%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AV+MSY LGWI+++I                            
Sbjct: 233 GYGEWLHGEAVAAGTVMAVDMSYRLGWIDESIVKRVNKILVRAKLPTTPPESMTVSMFKS 292

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD + LD TLR+F KS
Sbjct: 293 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDREALDATLRAFSKS 338

[Close]

BLAST of CmaCh06G001210 vs. TAIR 10
Match: AT5G66120.2 (3-dehydroquinate synthase, putative )

HSP 1 Score: 72.4 bits (176), Expect = 1.9e-13
Identity = 48/106 (45.28%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 13  GYGGWRGCTRV----VIAVNMSYYLGWINDTI---------------------------- 72
           GYG W     V    V+AV+MSY LGWI+++I                            
Sbjct: 337 GYGEWLHGEAVAAGTVMAVDMSYRLGWIDESIVKRVNKILVRAKLPTTPPESMTVSMFKS 396

Query: 73  ---VDKKVADGLLRLILLKDP-RNYLFTGDYDWKVLDDTLRSFCKS 83
              VDKKVADGLLRLILLK P  N +FTGDYD + LD TLR+F KS
Sbjct: 397 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDREALDATLRAFSKS 442

The following BLAST results are available for this feature:

BLAST of CmaCh06G001210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
U3KRF2	6.4e-14	44.14	3-dehydroquinate synthase, chloroplastic OS=Actinidia chinensis var. chinensis O...	[more]
Q8VYV7	2.7e-12	45.28	3-dehydroquinate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DHQS...	[more]
Q8RU74	6.6e-11	43.40	3-dehydroquinate synthase, chloroplastic OS=Solanum lycopersicum OX=4081 GN=DHQS...	[more]
A4XPQ2	3.2e-05	34.95	3-dehydroquinate synthase OS=Pseudomonas mendocina (strain ymp) OX=399739 GN=aro...	[more]
A6VDF9	7.1e-05	32.04	3-dehydroquinate synthase OS=Pseudomonas aeruginosa (strain PA7) OX=381754 GN=ar...	[more]

BLAST of CmaCh06G001210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLW2	1.1e-13	50.94	3-dehydroquinate synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BJA4	1.1e-13	50.94	3-dehydroquinate synthase, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103490680...	[more]
A0A0A0L1L7	4.3e-13	50.00	DHQ_synthase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G00268...	[more]
A0A346I7J5	5.6e-13	49.06	3-dehydroquinate synthase OS=Senna obtusifolia OX=346985 PE=2 SV=1	[more]
A0A067JJD2	7.3e-13	46.85	DHQ_synthase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_2538...	[more]

BLAST of CmaCh06G001210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052950.1	2.3e-13	50.94	3-dehydroquinate synthase [Cucumis melo var. makuwa] >TYK11406.1 3-dehydroquinat...	[more]
XP_008448531.1	2.3e-13	50.94	PREDICTED: 3-dehydroquinate synthase, chloroplastic [Cucumis melo]	[more]
XP_004146151.1	8.9e-13	50.00	3-dehydroquinate synthase, chloroplastic [Cucumis sativus] >KGN55648.1 hypotheti...	[more]
AXP11715.1	1.2e-12	49.06	3-dehydroquinate synthase [Senna obtusifolia] >KAF7809634.1 3-dehydroquinate syn...	[more]
XP_027361769.1	1.5e-12	47.66	3-dehydroquinate synthase, chloroplastic [Abrus precatorius]	[more]

BLAST of CmaCh06G001210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66120.1	1.9e-13	45.28	3-dehydroquinate synthase, putative	[more]
AT5G66120.2	1.9e-13	45.28	3-dehydroquinate synthase, putative	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G001210.1	CmaCh06G001210.1	mRNA