CmaCh06G000390 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G000390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	TFIIS N-terminal domain-containing protein
Location	Cma_Chr06: 218612 .. 221967 (-)
RNA-Seq Expression	CmaCh06G000390
Synteny	CmaCh06G000390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGCCAAGTCTGGGTCCTTGGATTACTGGAGGGATTACTTCCGGAATGCGAATTCGGATATTTTTAGCTTAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCCAAGGAGTTCAGATTGAGGAGAGATCGAATTGCAGAGCAGTTGTTTTCATGCCGATTGACTCGCTGTTTGGGTTGCGACCGAGTGGAGCTGGCGGTGGCCGGCGATGTGGACTGCGAAACGGGTTTCAAGAGCGATTCTGCCGGAGATGGGCGTGCGTTTGAGGGCGGTGGGAGCAAAGAGAGCAAGGTTTACAGCAGTAGAGATGATGGAGGGGAGATGAATTTCAATCAGGTTAGCAATTATAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAAGAATCTGAGATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTCAATAATTTTGAAGAAGAGGTAATGAATGATTGTTTTGGGTCTTTACATTTTCTGGGATGTTCCGTTGTTTCTCATGTTGTGTGTTTCTTGTGCAGTCTGATTCAGTGTTGTTTGAATCCCTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATGCCCTGCAGGTGATGATTTGAATTCTTCTGTTTGCTCTTGCATCTTTGGGGCAAGTTAAGTTTTGTTGGTTCTTCTTGTTTCTGATTGAGGATTTTTCTCTCTTTACCAGGCAACTGAGATTGGCAAGGCTGTTAATGGTCTTCGAAAGCATGGATCGAAGCGCATTCGCCATCTTGTTCGATTTCTTATCACGTACTAAATCTTGCCTTCAAAGCTCAATAGCAAGTATACATGTTCTATGATGAGTGCCCCAACTAAATTTGTTGTTGACACTCTATATGTCATCTTCCTTTGGATTTGTTCTTTAAAACTTACTCATTTGATTTTGAACATATAAGAATCAGTGTTTGTTCGACTGAGTTTTAATGAACAAAGAATTGTCTTCTTCGACCATGCAGCGTCCATTATTTTGTTTTTTGAGTGAGTGGAGAGCTTTTGTAGCTCATCTGTGCCTTTACAACTTGTTTGCTCACTCAGGGAGTTCTCTGTTTTGCATAGCATATAAGGAAACCTCGTCTTTGATATCATTATAAATGGCTGCTTGTTGTTAGTTTACTTTGCTTGAGGGTAAAAGATCTACTTTATTGGTTGCAGAGAGTGGAAAGAAATGGTGGACTTGTGGGTAAAAGCTACAGCTGCTGTTCATGGTAGAGTTCATTTTAGCTACACATGCATCTACATCGTTTCATGCCAACTTTCGAGATTTATTTACTGGGGAATGTTTTTGTTTTCCTGACAAAAAAGGTTCAGAAGTCACACCGGATTCGAAAAGTATGCCTGCATCTGAACAAGAAGAAGATGATTATGAAGATGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCAATGGAGCTCTCACAAGTATGTCTCTATTTTCGAGTTGAAATGAGTTTTTACTCTCAAGAAAAGTTATCTACTTTATGTTGCATTGGTGGGTTCTAATCGACTGTATTTTACTTGCCATTCCATTCCCTTACTTGGTGAAGTTCTTTGATGGCATGGACGATGATGGAAGTGAGTTCATTATGCAATATCCTATGCTTTTCTCAATCACTTTTTTAGACTCTCCATTTCTTAGATTCATGATTACCAATGGGGATATATGTTTCAGATCCTCGAAACAGTGGGGAGTTCGTCAAGGAGCGCGATAATGGAAGAAAAACATCGAATGGCAGTCAAAACCCTATGAGGTGTAAACAACAAACCACTCGAGAGGTTAATGTGGTTGCTAAGGACAATCGTGAATCTAAGGACAATAAGAGTCAAATGAAAGAACAAGTTGTGAAGCCAAACAAGCCACCATCAAATGCAAATTCTGGGCTTTCGAGGCCGCAGAAGCCGAGCACCGTGCAGAAGGACAATCATGAGAAGTTGCAGCGTAAAGTGGAGAAGCCTACGATCCCAAAGAGGAGCCTGCAAGATGTAAGTAGCTGAAGATTGTAAAGTTATTTGGGGGTTTGTCCTTTGTCCTTGTACCTGATTTTTTCGATTTGTGTCTACCAGAAGTTCAAGTGCTCGGATGAGGTTGCAGTTCAAGTGAAACTAGAAGCCACTAAGAGGAAACTGCAAGAGAGTTACCAACAAGCTGAAAACGGTATTTGCTTTGTTTTGTTTTCCATCTATGCTTTTATCCACTCTGATACCAGTTTCATAGGCAGTCTAAAAGCTTTCTTGCTGAATATTTTAAGTATCAATCAAAGCAACTAGCTAAATATTTGCACCCGAGCATAGTTAAGTTTAACTGGTTAAGGCGTATATGACCAAAATGAGAGCTCTTTTAAACACATTTATGAAGTTGTTGAATATAACTAACTACATAACTGCTGATTCATGGTGGTGTTTATTGAACAGCCAAAAAGCAGCGGACGATACAGGTTATGGAACTACACGATATTCCGAAGCAGGGAATGGGCCACAGAAATGTGCACCTAAAATCTGGAGGCCACAATCGGCATTGGACAAACGGGCGGCGTTAGGATGAAATGATAGCGAGGAACAAGACTGATACTTCCAGGATACTTTCCTGGTGACTTTCCACCCAGAATCAGGTGGAAGATCATACTAAAAGCTCCCTGGCAAACGGTGTCTTGACCTACTCTACCTGCTTCAAGGTAAACAACAAGAAACTTGGTTCACTGTGTTGTGCCAGAGAAGGCGATTCCGATTCAAAGGAGAATCGGAGATGGAAAAAAAAAAAAGAAAAAAAAAAGAAGAACGATTTCGTAGTTGAAGTACATTTTGAAGTATAGAGAATTTCTTATGGAATTTGGGAGGCAAAATTATATAGCTTTTATAGGTGGTTTCTCAGGGAGTGTTGACATGGTTATATCTCTCTTCTTACATCATAATGACTGTATAGAACCCCTCATTTATTTTGGTTTCAAATTTTGCAAGCTATTCTCTCTTTCTCTTCTCTTGCTTGGTTGCTAGGAACTGAGGGGCTTCTGGTTGTGATGGTCCTTTTGGCTGTTATGACCCCACCCAAAGCCGAACCCAATTAATCAACCAAATCCAATTCCAAAAGCCAACCTCCTTTTTGTCCAAATTGGACCACCTTCAACGTTTTTGAACTGTGTGTTCGTCTCTCAAAACTGTACCTTTTGGGACTCTGCTCTGCCCTGCTCTGCAGTGAGGGGAGGGAGCATCATGGGGCCACTCACCTTTTCATCTCTTTATTATAATCTATCAATAATATTTATATTTCATAACCTGTTTGTAATTATATAATGCTCC

mRNA sequence

ATGTCCGCCAAGTCTGGGTCCTTGGATTACTGGAGGGATTACTTCCGGAATGCGAATTCGGATATTTTTAGCTTAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCCAAGGAGTTCAGATTGAGGAGAGATCGAATTGCAGAGCAGTTGTTTTCATGCCGATTGACTCGCTGTTTGGGTTGCGACCGAGTGGAGCTGGCGGTGGCCGGCGATGTGGACTGCGAAACGGGTTTCAAGAGCGATTCTGCCGGAGATGGGCGTGCGTTTGAGGGCGGTGGGAGCAAAGAGAGCAAGGTTTACAGCAGTAGAGATGATGGAGGGGAGATGAATTTCAATCAGGTTAGCAATTATAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAAGAATCTGAGATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTCAATAATTTTGAAGAAGAGTCTGATTCAGTGTTGTTTGAATCCCTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATGCCCTGCAGGCAACTGAGATTGGCAAGGCTGTTAATGGTCTTCGAAAGCATGGATCGAAGCGCATTCGCCATCTTGTTCGATTTCTTATCACAGAGTGGAAAGAAATGGTGGACTTGTGGGTAAAAGCTACAGCTGCTGTTCATGGTTCAGAAGTCACACCGGATTCGAAAAGTATGCCTGCATCTGAACAAGAAGAAGATGATTATGAAGATGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCAATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAACAGTGGGGAGTTCGTCAAGGAGCGCGATAATGGAAGAAAAACATCGAATGGCAGTCAAAACCCTATGAGGTGTAAACAACAAACCACTCGAGAGGTTAATGTGGTTGCTAAGGACAATCGTGAATCTAAGGACAATAAGAGTCAAATGAAAGAACAAGTTGTGAAGCCAAACAAGCCACCATCAAATGCAAATTCTGGGCTTTCGAGGCCGCAGAAGCCGAGCACCGTGCAGAAGGACAATCATGAGAAGTTGCAGCGTAAAGTGGAGAAGCCTACGATCCCAAAGAGGAGCCTGCAAGATAAGTTCAAGTGCTCGGATGAGGTTGCAGTTCAAGTGAAACTAGAAGCCACTAAGAGGAAACTGCAAGAGAGTTACCAACAAGCTGAAAACGCCAAAAAGCAGCGGACGATACAGGTTATGGAACTACACGATATTCCGAAGCAGGGAATGGGCCACAGAAATGTGCACCTAAAATCTGGAGGCCACAATCGGCATTGGACAAACGGGCGGCGTTAGGATGAAATGATAGCGAGGAACAAGACTGATACTTCCAGGATACTTTCCTGGTGACTTTCCACCCAGAATCAGGTGGAAGATCATACTAAAAGCTCCCTGGCAAACGGTGTCTTGACCTACTCTACCTGCTTCAAGGTAAACAACAAGAAACTTGGTTCACTGTGTTGTGCCAGAGAAGGCGATTCCGATTCAAAGGAGAATCGGAGATGGAAAAAAAAAAAAGAAAAAAAAAAGAAGAACGATTTCGTAGTTGAAGTACATTTTGAAGTATAGAGAATTTCTTATGGAATTTGGGAGGCAAAATTATATAGCTTTTATAGGTGGTTTCTCAGGGAGTGTTGACATGGTTATATCTCTCTTCTTACATCATAATGACTGTATAGAACCCCTCATTTATTTTGGTTTCAAATTTTGCAAGCTATTCTCTCTTTCTCTTCTCTTGCTTGGTTGCTAGGAACTGAGGGGCTTCTGGTTGTGATGGTCCTTTTGGCTGTTATGACCCCACCCAAAGCCGAACCCAATTAATCAACCAAATCCAATTCCAAAAGCCAACCTCCTTTTTGTCCAAATTGGACCACCTTCAACGTTTTTGAACTGTGTGTTCGTCTCTCAAAACTGTACCTTTTGGGACTCTGCTCTGCCCTGCTCTGCAGTGAGGGGAGGGAGCATCATGGGGCCACTCACCTTTTCATCTCTTTATTATAATCTATCAATAATATTTATATTTCATAACCTGTTTGTAATTATATAATGCTCC

Coding sequence (CDS)

ATGTCCGCCAAGTCTGGGTCCTTGGATTACTGGAGGGATTACTTCCGGAATGCGAATTCGGATATTTTTAGCTTAATCGATTACGCAATCTTGGTGGCGGCTTCCGATTGTCCCAAGGAGTTCAGATTGAGGAGAGATCGAATTGCAGAGCAGTTGTTTTCATGCCGATTGACTCGCTGTTTGGGTTGCGACCGAGTGGAGCTGGCGGTGGCCGGCGATGTGGACTGCGAAACGGGTTTCAAGAGCGATTCTGCCGGAGATGGGCGTGCGTTTGAGGGCGGTGGGAGCAAAGAGAGCAAGGTTTACAGCAGTAGAGATGATGGAGGGGAGATGAATTTCAATCAGGTTAGCAATTATAGCTTTGGTGAAGCTGAAGCATTGACTGATGAAATTGAACAAGAATCTGAGATTGTTGGGGAGGTTTTGAGGATCAAAGAGATTCTCAATAATTTTGAAGAAGAGTCTGATTCAGTGTTGTTTGAATCCCTTAGAAGACTTGAATTGATGGCTCTATCAGTTGATGCCCTGCAGGCAACTGAGATTGGCAAGGCTGTTAATGGTCTTCGAAAGCATGGATCGAAGCGCATTCGCCATCTTGTTCGATTTCTTATCACAGAGTGGAAAGAAATGGTGGACTTGTGGGTAAAAGCTACAGCTGCTGTTCATGGTTCAGAAGTCACACCGGATTCGAAAAGTATGCCTGCATCTGAACAAGAAGAAGATGATTATGAAGATGGGCTTCCCTCTCCTCCTTTAGATGAAGCTGCATTTTTTACCACTCAGCCCACATCAATGGAGCTCTCACAATTCTTTGATGGCATGGACGATGATGGAAATCCTCGAAACAGTGGGGAGTTCGTCAAGGAGCGCGATAATGGAAGAAAAACATCGAATGGCAGTCAAAACCCTATGAGGTGTAAACAACAAACCACTCGAGAGGTTAATGTGGTTGCTAAGGACAATCGTGAATCTAAGGACAATAAGAGTCAAATGAAAGAACAAGTTGTGAAGCCAAACAAGCCACCATCAAATGCAAATTCTGGGCTTTCGAGGCCGCAGAAGCCGAGCACCGTGCAGAAGGACAATCATGAGAAGTTGCAGCGTAAAGTGGAGAAGCCTACGATCCCAAAGAGGAGCCTGCAAGATAAGTTCAAGTGCTCGGATGAGGTTGCAGTTCAAGTGAAACTAGAAGCCACTAAGAGGAAACTGCAAGAGAGTTACCAACAAGCTGAAAACGCCAAAAAGCAGCGGACGATACAGGTTATGGAACTACACGATATTCCGAAGCAGGGAATGGGCCACAGAAATGTGCACCTAAAATCTGGAGGCCACAATCGGCATTGGACAAACGGGCGGCGTTAG

Protein sequence

MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEEDDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGSQNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQKDNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR

Homology

[Close]

BLAST of CmaCh06G000390 vs. ExPASy Swiss-Prot
Match: Q9FHK9 (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana OX=3702 GN=MED26B PE=2 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 2.8e-87
Identity = 216/468 (46.15%), Postives = 283/468 (60.47%), Query Frame = 0


Query: 5   SGSLDYWRDYF-RNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLD WR+YF R  +SDIF +ID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDVDCETGFKSDSAGDGRAFE----GGGSKESKVYSSRDDGGEMNFNQVSNY 124
           D +EL+V GD +   G   +  G     E     GGSKESK  SSR D  ++    VSNY
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQI----VSNY 123

Query: 125 SFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N E+E +SVL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQE 244
           EIGKAVNGLRKH S +IR L + LI EWKE+VD WV  T  + G+E TP+S +    ++E
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEE 243

Query: 245 EDDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNG 304
           E       PS P D    FT +P   E+S FFD +D DGNPRNS E    R++ R+  N 
Sbjct: 244 E-----AFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQN- 303

Query: 305 SQNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNAN-SGLSRPQKPSTV 364
                            +AK  R+ +  + ++++   +  KP S  +  G  RP K ST 
Sbjct: 304 -----------------IAK--RKPEGTQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTE 363

Query: 365 QKDNHEKLQ-RKVEKPTIPKRSL------------QDKFKCSDEVAVQVKLEATKRKLQE 424
           Q+  +E +   K EKP I ++ +            Q+K K  D      K E  KRKLQE
Sbjct: 364 QRMKNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQE 423

Query: 425 SYQQAENAKKQRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           SYQ  ENAKKQRTIQV+E+  IPKQG   +    + G  NR+W NGR+
Sbjct: 424 SYQHHENAKKQRTIQVLEM--IPKQGSAQKPQLKRPGMSNRNWANGRK 436

[Close]

BLAST of CmaCh06G000390 vs. ExPASy Swiss-Prot
Match: F4J4Y5 (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana OX=3702 GN=MED26A PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.8e-65
Identity = 182/430 (42.33%), Postives = 243/430 (56.51%), Query Frame = 0


Query: 5   SGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD WR+YFR  +SDIF +ID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 124
            +EL++AGD         ++A +     GGG +                        G++
Sbjct: 67  HLELSIAGD---------EAAVEIVGVGGGGDR------------------------GDS 126

Query: 125 EALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 184
              T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEIGKA
Sbjct: 127 GVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKA 186

Query: 185 VNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEEDDYE 244
           VNGLR+H S +I  L + L  EWK +VD W+     + G+E TP+S ++   ++EE    
Sbjct: 187 VNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEE---- 246

Query: 245 DGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGSQNPM 304
              PSPP D    +  +P   ELSQ  D +D DGNPR+S E   ER         SQ+  
Sbjct: 247 -AFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHSVESKHERK--------SQSSA 306

Query: 305 RCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQKDNHE 364
             + + T + NVV    R   D +++ +E  V+P K  +       R  K S  Q  +  
Sbjct: 307 GRRPKGTNDANVV---GRYCNDQQTRREEADVRPMKHSATDVVEPKRQTKQSREQMVS-- 366

Query: 365 KLQRKVEKPTIPKRSL----QDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 424
            +QRK    T  KR L    QDK K  D      K E  KRKLQESY Q ENAK+QRTIQ
Sbjct: 367 AIQRKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRTIQ 379

Query: 425 VMELHDIPKQ 431
           V+E   IPKQ
Sbjct: 427 VLE--TIPKQ 379

[Close]

BLAST of CmaCh06G000390 vs. ExPASy Swiss-Prot
Match: F4KFC7 (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana OX=3702 GN=MED26C PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.6e-21
Identity = 125/447 (27.96%), Postives = 195/447 (43.62%), Query Frame = 0


Query: 8   LDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCDRV 67
           LD +R    NA  D+++ ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 62

Query: 68  ELAVAGDVDCETGFKSDSAGDGRAFE--GGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 127
                G+V   T        +GR  E      +E    ++ ++  E + N   +  F   
Sbjct: 63  -FGGGGNV---TEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPF 122

Query: 128 EALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 187
             L D+ EQ+S     ++ IKE L +  + S+  L E L+ LE M ++  ALQ T+IG+ 
Sbjct: 123 AGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQETDIGRH 182

Query: 188 VNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEEDDYE 247
           VN +RKH S  +R L + L+ +WKE VD WVK           P     P+   +ED   
Sbjct: 183 VNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN--------QPGDLEPPSLIADEDS-- 242

Query: 248 DGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGSQNPM 307
                 P+ +A                                          NGS+  +
Sbjct: 243 ------PVQKA----------------------------------------LHNGSRQQV 302

Query: 308 RCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQKDNHE 367
                +    N  +  ++ S   + + K + V P   P   +   ++P +PS  Q+    
Sbjct: 303 PDFGYSPVPQNGYSSSSKNSNITEPERKPRPVAPQ--PRRESPSPAKPSRPSPSQQ---- 353

Query: 368 KLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMEL 427
                    TIP+          D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM++
Sbjct: 363 ---------TIPR----------DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDI 353

Query: 428 HDIPKQGMGHRNVHLKSGGHN---RHW 449
           HDIPK   G      + GG +   RHW
Sbjct: 423 HDIPKPKKG--GFFPRKGGSSQGGRHW 353

[Close]

BLAST of CmaCh06G000390 vs. ExPASy TrEMBL
Match: A0A6J1I7W1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita maxima OX=3661 GN=LOC111469992 PE=4 SV=1)

HSP 1 Score: 872.5 bits (2253), Expect = 7.9e-250
Identity = 453/453 (100.00%), Postives = 453/453 (100.00%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360
           QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK
Sbjct: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360

Query: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 453

[Close]

BLAST of CmaCh06G000390 vs. ExPASy TrEMBL
Match: A0A6J1FCK1 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita moschata OX=3662 GN=LOC111442859 PE=4 SV=1)

HSP 1 Score: 839.7 bits (2168), Expect = 5.6e-240
Identity = 440/453 (97.13%), Postives = 443/453 (97.79%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVD ETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVD+WVKATAAVHGSEVTPDSKSMP SEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVK+RDNGRKTS+GS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360
           QNPMRCKQQTTREVNVVA      KDNKSQMKEQVVKPNKPPSNANSG SR QKPSTVQK
Sbjct: 301 QNPMRCKQQTTREVNVVA------KDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQK 360

Query: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of CmaCh06G000390 vs. ExPASy TrEMBL
Match: A0A5A7UDQ2 (Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006410 PE=4 SV=1)

HSP 1 Score: 722.6 bits (1864), Expect = 1.0e-204
Identity = 389/458 (84.93%), Postives = 414/458 (90.39%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   D ETGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWK+MVD+WV+ATAAV G+EVTPDSKS  A+ 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGSQNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKP-NKPPSNANSGLSRPQKP 360
           SNG+QNP RC QQTTREVNV+      SK+NK+QMKEQVVKP NKP SN NSGL R QK 
Sbjct: 301 SNGNQNPTRCNQQTTREVNVL------SKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKL 360

Query: 361 STVQKDNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420
           ST QKDNHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKK
Sbjct: 361 STEQKDNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420

Query: 421 QRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           QRTIQVMELHD+PKQG+GHRN HLKSGG NRHWTNGRR
Sbjct: 421 QRTIQVMELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CmaCh06G000390 vs. ExPASy TrEMBL
Match: A0A1S3B7K4 (probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo OX=3656 GN=LOC103486863 PE=4 SV=1)

HSP 1 Score: 722.6 bits (1864), Expect = 1.0e-204
Identity = 389/458 (84.93%), Postives = 414/458 (90.39%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   D ETGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWK+MVD+WV+ATAAV G+EVTPDSKS  A+ 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGSQNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKP-NKPPSNANSGLSRPQKP 360
           SNG+QNP RC QQTTREVNV+      SK+NK+QMKEQVVKP NKP SN NSGL R QK 
Sbjct: 301 SNGNQNPTRCNQQTTREVNVL------SKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKL 360

Query: 361 STVQKDNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420
           ST QKDNHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKK
Sbjct: 361 STEQKDNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420

Query: 421 QRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           QRTIQVMELHD+PKQG+GHRN HLKSGG NRHWTNGRR
Sbjct: 421 QRTIQVMELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CmaCh06G000390 vs. ExPASy TrEMBL
Match: A0A0A0LBK9 (TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G817210 PE=4 SV=1)

HSP 1 Score: 712.6 bits (1838), Expect = 1.0e-201
Identity = 385/458 (84.06%), Postives = 410/458 (89.52%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   D ETGFKSD   DG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESD VLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWKEMVDLWV+ATAAV G+EVTPDSK+  A+ 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGSQNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKP-NKPPSNANSGLSRPQKP 360
           SNG+QNP RC QQTTREVNV+      SK+NK+QMKEQVVKP NKP SN NSGL R QK 
Sbjct: 301 SNGNQNPTRCNQQTTREVNVL------SKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKL 360

Query: 361 STVQKDNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420
           ST QKDNHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKK
Sbjct: 361 STEQKDNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420

Query: 421 QRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           QRTIQVMELHD+PKQG+GHRN HLKSGG NR+W NGRR
Sbjct: 421 QRTIQVMELHDLPKQGIGHRNPHLKSGGFNRNWANGRR 452

[Close]

BLAST of CmaCh06G000390 vs. NCBI nr
Match: XP_022971199.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita maxima])

HSP 1 Score: 872.5 bits (2253), Expect = 1.6e-249
Identity = 453/453 (100.00%), Postives = 453/453 (100.00%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360
           QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK
Sbjct: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360

Query: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 453

[Close]

BLAST of CmaCh06G000390 vs. NCBI nr
Match: XP_023539160.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 842.8 bits (2176), Expect = 1.4e-240
Identity = 441/453 (97.35%), Postives = 444/453 (98.01%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKS SLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSASLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVD ETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVD+WVKATAAVHGSEVTPDSKSMPASEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVK+ DNGRKTSNGS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKHDNGRKTSNGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360
           QNPMRCKQQTTREVNVVA      KDNKSQMKEQVVKPNKPPSNANSGLSRPQKPS+VQK
Sbjct: 301 QNPMRCKQQTTREVNVVA------KDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSSVQK 360

Query: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of CmaCh06G000390 vs. NCBI nr
Match: KAG6596180.1 (putative mediator of RNA polymerase II transcription subunit 26b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027717.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 840.1 bits (2169), Expect = 8.9e-240
Identity = 440/453 (97.13%), Postives = 444/453 (98.01%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVD ETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQ+SEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQQSEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVD+WVKATAAVHGSEVTPDSKSMPASEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPASEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVK+RDNGRKTS+GS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360
           QNPMRCKQQTTREVNVVA      KDNKSQMKEQVVKPNKPPSNANSG SR QKPSTVQK
Sbjct: 301 QNPMRCKQQTTREVNVVA------KDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQK 360

Query: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of CmaCh06G000390 vs. NCBI nr
Match: XP_022936188.1 (probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita moschata])

HSP 1 Score: 839.7 bits (2168), Expect = 1.2e-239
Identity = 440/453 (97.13%), Postives = 443/453 (97.79%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120
           LGCDRVELAVAGDVD ETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS
Sbjct: 61  LGCDRVELAVAGDVDGETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYS 120

Query: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180
           FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE
Sbjct: 121 FGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATE 180

Query: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEE 240
           IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVD+WVKATAAVHGSEVTPDSKSMP SEQEE
Sbjct: 181 IGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDMWVKATAAVHGSEVTPDSKSMPVSEQEE 240

Query: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGS 300
           DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVK+RDNGRKTS+GS
Sbjct: 241 DDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKKRDNGRKTSSGS 300

Query: 301 QNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQK 360
           QNPMRCKQQTTREVNVVA      KDNKSQMKEQVVKPNKPPSNANSG SR QKPSTVQK
Sbjct: 301 QNPMRCKQQTTREVNVVA------KDNKSQMKEQVVKPNKPPSNANSGFSRLQKPSTVQK 360

Query: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420
           DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ
Sbjct: 361 DNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 420

Query: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR
Sbjct: 421 VMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 447

[Close]

BLAST of CmaCh06G000390 vs. NCBI nr
Match: XP_008443218.1 (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cucumis melo] >KAA0053912.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucumis melo var. makuwa] >TYK25493.1 putative mediator of RNA polymerase II transcription subunit 26b [Cucumis melo var. makuwa])

HSP 1 Score: 722.6 bits (1864), Expect = 2.1e-204
Identity = 389/458 (84.93%), Postives = 414/458 (90.39%), Query Frame = 0


Query: 1   MSAKSGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60
           M+AKSGSLD WR+YFRNANSDIF +IDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  LGCDRVELAVAGDV---DCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVS 120
           LGCDRVELAVAGD+   D ETGFKSD AGDG  FE GGSKESKVYSSRDD GEMN N+VS
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 NYSFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQ 180
           N+SFGEAEALTDEIEQES+IVGEVLRIKEILNNFE+ESDSVLFESLRRLELMALSVD LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASE 240
           ATEIGKAVN LRKHGSKRIRHL R LI EWK+MVD+WV+ATAAV G+EVTPDSKS  A+ 
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKSAAV 240

Query: 241 QEEDDY-EDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKT 300
           +EEDDY E+GLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSG+FVK R+N RKT
Sbjct: 241 KEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGDFVKNRNNVRKT 300

Query: 301 SNGSQNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKP-NKPPSNANSGLSRPQKP 360
           SNG+QNP RC QQTTREVNV+      SK+NK+QMKEQVVKP NKP SN NSGL R QK 
Sbjct: 301 SNGNQNPTRCNQQTTREVNVL------SKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKL 360

Query: 361 STVQKDNHEKLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420
           ST QKDNHEK QRK+EKPTIPKR+ QD FKCSDEVAVQVKLEATKRKLQESYQQAENAKK
Sbjct: 361 STEQKDNHEKFQRKLEKPTIPKRNQQDNFKCSDEVAVQVKLEATKRKLQESYQQAENAKK 420

Query: 421 QRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           QRTIQVMELHD+PKQG+GHRN HLKSGG NRHWTNGRR
Sbjct: 421 QRTIQVMELHDLPKQGIGHRNPHLKSGGFNRHWTNGRR 452

[Close]

BLAST of CmaCh06G000390 vs. TAIR 10
Match: AT5G05140.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 323.9 bits (829), Expect = 2.0e-88
Identity = 216/468 (46.15%), Postives = 283/468 (60.47%), Query Frame = 0


Query: 5   SGSLDYWRDYF-RNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGC 64
           SGSLD WR+YF R  +SDIF +ID+AI+VAA+DCP +F+ RRD+IAE LFSCR+ RC+GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVAGDVDCETGFKSDSAGDGRAFE----GGGSKESKVYSSRDDGGEMNFNQVSNY 124
           D +EL+V GD +   G   +  G     E     GGSKESK  SSR D  ++    VSNY
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQI----VSNY 123

Query: 125 SFGEAEALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQAT 184
           +F EAEAL+DEIE+ S +  EV RIKEIL N E+E +SVL +SLR L+LM+L+VD L++T
Sbjct: 124 TFDEAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKST 183

Query: 185 EIGKAVNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQE 244
           EIGKAVNGLRKH S +IR L + LI EWKE+VD WV  T  + G+E TP+S +    ++E
Sbjct: 184 EIGKAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLDEE 243

Query: 245 EDDYEDGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNG 304
           E       PS P D    FT +P   E+S FFD +D DGNPRNS E    R++ R+  N 
Sbjct: 244 E-----AFPSLPYD-VDIFTPEPNGFEISHFFDSLDFDGNPRNSEEHNTSREHERRPQN- 303

Query: 305 SQNPMRCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNAN-SGLSRPQKPSTV 364
                            +AK  R+ +  + ++++   +  KP S  +  G  RP K ST 
Sbjct: 304 -----------------IAK--RKPEGTQMRIQDAPFRSIKPSSATDFDGTRRPVKQSTE 363

Query: 365 QKDNHEKLQ-RKVEKPTIPKRSL------------QDKFKCSDEVAVQVKLEATKRKLQE 424
           Q+  +E +   K EKP I ++ +            Q+K K  D      K E  KRKLQE
Sbjct: 364 QRMKNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQEKLKGLD---ADAKFEFAKRKLQE 423

Query: 425 SYQQAENAKKQRTIQVMELHDIPKQGMGHRNVHLKSGGHNRHWTNGRR 454
           SYQ  ENAKKQRTIQV+E+  IPKQG   +    + G  NR+W NGR+
Sbjct: 424 SYQHHENAKKQRTIQVLEM--IPKQGSAQKPQLKRPGMSNRNWANGRK 436

[Close]

BLAST of CmaCh06G000390 vs. TAIR 10
Match: AT3G10820.2 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 251.5 bits (641), Expect = 1.3e-66
Identity = 182/430 (42.33%), Postives = 243/430 (56.51%), Query Frame = 0


Query: 5   SGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD WR+YFR  +SDIF +ID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 124
            +EL++AGD         ++A +     GGG +                        G++
Sbjct: 67  HLELSIAGD---------EAAVEIVGVGGGGDR------------------------GDS 126

Query: 125 EALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 184
              T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEIGKA
Sbjct: 127 GVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKA 186

Query: 185 VNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEEDDYE 244
           VNGLR+H S +I  L + L  EWK +VD W+     + G+E TP+S ++   ++EE    
Sbjct: 187 VNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEE---- 246

Query: 245 DGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGSQNPM 304
              PSPP D    +  +P   ELSQ  D +D DGNPR+S E   ER         SQ+  
Sbjct: 247 -AFPSPPHD-LDIYAPEPNGFELSQILDCLDCDGNPRHSVESKHERK--------SQSSA 306

Query: 305 RCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQKDNHE 364
             + + T + NVV    R   D +++ +E  V+P K  +       R  K S  Q  +  
Sbjct: 307 GRRPKGTNDANVV---GRYCNDQQTRREEADVRPMKHSATDVVEPKRQTKQSREQMVS-- 366

Query: 365 KLQRKVEKPTIPKRSL----QDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQ 424
            +QRK    T  KR L    QDK K  D      K E  KRKLQESY Q ENAK+QRTIQ
Sbjct: 367 AIQRKPTAVTEQKRKLAGPQQDKLKALDP---DSKFEFAKRKLQESYHQHENAKRQRTIQ 379

Query: 425 VMELHDIPKQ 431
           V+E   IPKQ
Sbjct: 427 VLE--TIPKQ 379

[Close]

BLAST of CmaCh06G000390 vs. TAIR 10
Match: AT3G10820.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 201.4 bits (511), Expect = 1.5e-51
Identity = 117/265 (44.15%), Postives = 162/265 (61.13%), Query Frame = 0


Query: 5   SGSLDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRCLGCD 64
           S SLD WR+YFR  +SDIF +ID+AI+VAA+D PKEF+ R DRIAE LFSC+++RC+GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVAGDVDCETGFKSDSAGDGRAFEGGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 124
            +EL++AGD         ++A +     GGG +                        G++
Sbjct: 67  HLELSIAGD---------EAAVEIVGVGGGGDR------------------------GDS 126

Query: 125 EALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 184
              T E E+ S  V EV+RI++IL+N ++E DSVL ESLR+LE M++SVD L+ TEIGKA
Sbjct: 127 GVATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKA 186

Query: 185 VNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEEDDYE 244
           VNGLR+H S +I  L + L  EWK +VD W+     + G+E TP+S ++   ++EE    
Sbjct: 187 VNGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVIDEEE---- 232

Query: 245 DGLPSPPLDEAAFFTTQPTSMELSQ 270
              PSPP D    +  +P   ELSQ
Sbjct: 247 -AFPSPPHD-LDIYAPEPNGFELSQ 232

[Close]

BLAST of CmaCh06G000390 vs. TAIR 10
Match: AT5G09850.1 (Transcription elongation factor (TFIIS) family protein )

HSP 1 Score: 104.0 bits (258), Expect = 3.3e-22
Identity = 125/447 (27.96%), Postives = 195/447 (43.62%), Query Frame = 0


Query: 8   LDYWRDYFRNANSDIFSLIDYAILVAASDCPKEFRLRRDRIAEQLFSCRL-TRCLGCDRV 67
           LD +R    NA  D+++ ID AILVA+ D  +E + RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 62

Query: 68  ELAVAGDVDCETGFKSDSAGDGRAFE--GGGSKESKVYSSRDDGGEMNFNQVSNYSFGEA 127
                G+V   T        +GR  E      +E    ++ ++  E + N   +  F   
Sbjct: 63  -FGGGGNV---TEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVREKSVNVEDDDDFDPF 122

Query: 128 EALTDEIEQESEIVGEVLRIKEILNNFEEESDSVLFESLRRLELMALSVDALQATEIGKA 187
             L D+ EQ+S     ++ IKE L +  + S+  L E L+ LE M ++  ALQ T+IG+ 
Sbjct: 123 AGLFDD-EQKS-----IVEIKEKLED-PDLSEESLVELLQNLEDMDITFQALQETDIGRH 182

Query: 188 VNGLRKHGSKRIRHLVRFLITEWKEMVDLWVKATAAVHGSEVTPDSKSMPASEQEEDDYE 247
           VN +RKH S  +R L + L+ +WKE VD WVK           P     P+   +ED   
Sbjct: 183 VNRVRKHPSNNVRRLAKQLVKKWKETVDEWVKFN--------QPGDLEPPSLIADEDS-- 242

Query: 248 DGLPSPPLDEAAFFTTQPTSMELSQFFDGMDDDGNPRNSGEFVKERDNGRKTSNGSQNPM 307
                 P+ +A                                          NGS+  +
Sbjct: 243 ------PVQKA----------------------------------------LHNGSRQQV 302

Query: 308 RCKQQTTREVNVVAKDNRESKDNKSQMKEQVVKPNKPPSNANSGLSRPQKPSTVQKDNHE 367
                +    N  +  ++ S   + + K + V P   P   +   ++P +PS  Q+    
Sbjct: 303 PDFGYSPVPQNGYSSSSKNSNITEPERKPRPVAPQ--PRRESPSPAKPSRPSPSQQ---- 353

Query: 368 KLQRKVEKPTIPKRSLQDKFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMEL 427
                    TIP+          D+   +V  +  +++LQ++Y+QAENAKKQRTIQVM++
Sbjct: 363 ---------TIPR----------DKEHKEVDFDTARKRLQQNYRQAENAKKQRTIQVMDI 353

Query: 428 HDIPKQGMGHRNVHLKSGGHN---RHW 449
           HDIPK   G      + GG +   RHW
Sbjct: 423 HDIPKPKKG--GFFPRKGGSSQGGRHW 353

The following BLAST results are available for this feature:

BLAST of CmaCh06G000390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHK9	2.8e-87	46.15	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
F4J4Y5	1.8e-65	42.33	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
F4KFC7	4.6e-21	27.96	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]

BLAST of CmaCh06G000390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7W1	7.9e-250	100.00	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita ma...	[more]
A0A6J1FCK1	5.6e-240	97.13	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucurbita mo...	[more]
A0A5A7UDQ2	1.0e-204	84.93	Putative mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A1S3B7K4	1.0e-204	84.93	probable mediator of RNA polymerase II transcription subunit 26b OS=Cucumis melo...	[more]
A0A0A0LBK9	1.0e-201	84.06	TFIIS N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G8...	[more]

BLAST of CmaCh06G000390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971199.1	1.6e-249	100.00	probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita maxi...	[more]
XP_023539160.1	1.4e-240	97.35	probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita pepo...	[more]
KAG6596180.1	8.9e-240	97.13	putative mediator of RNA polymerase II transcription subunit 26b, partial [Cucur...	[more]
XP_022936188.1	1.2e-239	97.13	probable mediator of RNA polymerase II transcription subunit 26b [Cucurbita mosc...	[more]
XP_008443218.1	2.1e-204	84.93	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cuc...	[more]

BLAST of CmaCh06G000390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05140.1	2.0e-88	46.15	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	1.3e-66	42.33	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.1	1.5e-51	44.15	Transcription elongation factor (TFIIS) family protein	[more]
AT5G09850.1	3.3e-22	27.96	Transcription elongation factor (TFIIS) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 393..420
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 432..453
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 296..315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 316..333
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 269..378
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 439..453
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 357..378
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 334..356
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 278..295
None	No IPR available	PANTHER	PTHR46554:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..452
None	No IPR available	CDD	cd00183	TFIIS_I	coord: 140..212 e-value: 3.78483E-20 score: 82.3562
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 141..213 e-value: 1.5E-14 score: 64.4
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 163..211 e-value: 5.4E-10 score: 39.1
IPR017923	Transcription factor IIS, N-terminal	PROSITE	PS51319	TFIIS_N	coord: 139..214 score: 19.566393
IPR035441	TFIIS/LEDGF domain superfamily	GENE3D	1.20.930.10	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 130..223 e-value: 2.2E-20 score: 74.2
IPR035441	TFIIS/LEDGF domain superfamily	SUPERFAMILY	47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 137..222
IPR044805	Mediator of RNA polymerase II transcription subunit 26a/b-like	PANTHER	PTHR46554	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..452

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G000390.1	CmaCh06G000390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus