CmaCh06G000240 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G000240
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cma_Chr06: 156257 .. 156838 (+)
RNA-Seq Expression	CmaCh06G000240
Synteny	CmaCh06G000240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCATTGTTGCATGGGGAAAGCTGAAGAACGTCCAAGAAGCAGAGGAAATTTTTGATAGAGTTTTAAAAACATGGAAGAAGCTTTCCTCGAAACAATACTCTACCATGTTGAAGGTCTATGCAGACAATAAGATGCTGACGAAGGGCAAGGATCTAGTCAAGCAGATGGCAGACAGCGGTTGCCGAATCGGTCCATTAACATGGGATGCAGTTGTGAAACTCTATGTGGAAGCTGGGGAGGTAGAAAAGGCAGATTCTTTCTTGCAGAAGGCAGTCCAGAAAAACCAGATGAAGCCATTGTTTACCTCTTACATGGTTATCCTGGATCAGTATGCAAGGAGGGGTGACGTCCACAATGCAGAGAAAATGTTTCATAGGATGAGACTATCAGGTTACGTGGCTAGATTCAGCCAGTTTCAAGCTCTAATACAGGCATACATTAATGCCAAGGCTCCAGCCTACGGCATGAAAGAGAGAATGAAGGCAGATAATGTGTTTCCAAACAAAGCTTTGGCAGGAAAATTAGCCCAAATCGATGCATTCAGGAAGACAGCAGTGTCGGATTTACTTGACTGA

mRNA sequence

ATGGCTGCCATTGTTGCATGGGGAAAGCTGAAGAACGTCCAAGAAGCAGAGGAAATTTTTGATAGAGTTTTAAAAACATGGAAGAAGCTTTCCTCGAAACAATACTCTACCATGTTGAAGGTCTATGCAGACAATAAGATGCTGACGAAGGGCAAGGATCTAGTCAAGCAGATGGCAGACAGCGGTTGCCGAATCGGTCCATTAACATGGGATGCAGTTGTGAAACTCTATGTGGAAGCTGGGGAGGTAGAAAAGGCAGATTCTTTCTTGCAGAAGGCAGTCCAGAAAAACCAGATGAAGCCATTGTTTACCTCTTACATGGTTATCCTGGATCAGTATGCAAGGAGGGGTGACGTCCACAATGCAGAGAAAATGTTTCATAGGATGAGACTATCAGGTTACGTGGCTAGATTCAGCCAGTTTCAAGCTCTAATACAGGCATACATTAATGCCAAGGCTCCAGCCTACGGCATGAAAGAGAGAATGAAGGCAGATAATGTGTTTCCAAACAAAGCTTTGGCAGGAAAATTAGCCCAAATCGATGCATTCAGGAAGACAGCAGTGTCGGATTTACTTGACTGA

Coding sequence (CDS)

ATGGCTGCCATTGTTGCATGGGGAAAGCTGAAGAACGTCCAAGAAGCAGAGGAAATTTTTGATAGAGTTTTAAAAACATGGAAGAAGCTTTCCTCGAAACAATACTCTACCATGTTGAAGGTCTATGCAGACAATAAGATGCTGACGAAGGGCAAGGATCTAGTCAAGCAGATGGCAGACAGCGGTTGCCGAATCGGTCCATTAACATGGGATGCAGTTGTGAAACTCTATGTGGAAGCTGGGGAGGTAGAAAAGGCAGATTCTTTCTTGCAGAAGGCAGTCCAGAAAAACCAGATGAAGCCATTGTTTACCTCTTACATGGTTATCCTGGATCAGTATGCAAGGAGGGGTGACGTCCACAATGCAGAGAAAATGTTTCATAGGATGAGACTATCAGGTTACGTGGCTAGATTCAGCCAGTTTCAAGCTCTAATACAGGCATACATTAATGCCAAGGCTCCAGCCTACGGCATGAAAGAGAGAATGAAGGCAGATAATGTGTTTCCAAACAAAGCTTTGGCAGGAAAATTAGCCCAAATCGATGCATTCAGGAAGACAGCAGTGTCGGATTTACTTGACTGA

Protein sequence

MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQIDAFRKTAVSDLLD

Homology

[Close]

BLAST of CmaCh06G000240 vs. ExPASy Swiss-Prot
Match: Q9XI21 (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 260.0 bits (663), Expect = 2.1e-68
Identity = 123/193 (63.73%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           +AAI+A+GK+  V++AE +F++VLK   ++SS  YS +L+VY D+KM+++GKDLVKQM+D
Sbjct: 402 LAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSD 461

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGC IG LTWDAV+KLYVEAGEVEKA+S L KA+Q  Q+KPL +S+M ++ +Y RRGDVH
Sbjct: 462 SGCNIGALTWDAVIKLYVEAGEVEKAESSLSKAIQSKQIKPLMSSFMYLMHEYVRRGDVH 521

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           N EK+F RM+ +GY +RF  +Q LIQAY+NAKAPAYGMKERMKADN+FPNK LA +LA+ 
Sbjct: 522 NTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYGMKERMKADNIFPNKRLAAQLAKA 581

Query: 181 DAFRKTAVSDLLD 194
           D F+KT +SDLLD
Sbjct: 582 DPFKKTPLSDLLD 594

[Close]

BLAST of CmaCh06G000240 vs. ExPASy Swiss-Prot
Match: Q9C977 (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80270 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.4e-66
Identity = 120/193 (62.18%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           +AAI A+GKL  VQEAE IF++++K  ++ SS  YS +L+VY D+KML+KGKDLVK+MA+
Sbjct: 404 LAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAE 463

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRI   TWDA++KLYVEAGEVEKADS L KA +++  K +  S+M I+D+Y++RGDVH
Sbjct: 464 SGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHTKLMMNSFMYIMDEYSKRGDVH 523

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           N EK+F +MR +GY +R  QFQAL+QAYINAK+PAYGM++R+KADN+FPNK++A +LAQ 
Sbjct: 524 NTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKADNIFPNKSMAAQLAQG 583

Query: 181 DAFRKTAVSDLLD 194
           D F+KTA+SD+LD
Sbjct: 584 DPFKKTAISDILD 596

[Close]

BLAST of CmaCh06G000240 vs. ExPASy Swiss-Prot
Match: Q9LRP6 (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g15590 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.4e-59
Identity = 107/193 (55.44%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           ++AI AWGKLK V+EAE +F+R+++ +K      Y  ++++Y +NKML KG+DLVK+M +
Sbjct: 417 ISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMPYFALMEIYTENKMLAKGRDLVKRMGN 476

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           +G  IGP TW A+VKLY++AGEV KA+  L +A + N+M+P+FT+YM IL++YA+RGDVH
Sbjct: 477 AGIAIGPSTWHALVKLYIKAGEVGKAELILNRATKDNKMRPMFTTYMAILEEYAKRGDVH 536

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           N EK+F +M+ + Y A+  Q++ ++ AYINAK PAYGM ERMKADNVFPNK+LA KLAQ+
Sbjct: 537 NTEKVFMKMKRASYAAQLMQYETVLLAYINAKTPAYGMIERMKADNVFPNKSLAAKLAQV 596

Query: 181 DAFRKTAVSDLLD 194
           + F+K  VS LLD
Sbjct: 597 NPFKKCPVSVLLD 609

[Close]

BLAST of CmaCh06G000240 vs. ExPASy Swiss-Prot
Match: Q9FVX2 (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10
Identity = 46/164 (28.05%), Postives = 83/164 (50.61%), Query Frame = 0


Query: 9   KLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSGCRIGPL 68
           K KNV++A+E+F+ +   +    SK YS +L+ +     L K +++ ++M D+GC    +
Sbjct: 215 KSKNVRKAQEVFENMRDRFTP-DSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIV 274

Query: 69  TWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHNAEKMFHR 128
           T+  +V +  +AG V++A   + +++  +  KP    Y V++  Y     +  A   F  
Sbjct: 275 TYSIMVDILCKAGRVDEALGIV-RSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLE 334

Query: 129 MRLSGYVARFSQFQALIQAY--INAKAPAYGMKERMKADNVFPN 171
           M  SG  A  + F +LI A+   N     Y + + MK+  V PN
Sbjct: 335 MERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPN 376

[Close]

BLAST of CmaCh06G000240 vs. ExPASy Swiss-Prot
Match: Q9LYT2 (Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana OX=3702 GN=At3g59040 PE=2 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-09
Identity = 45/172 (26.16%), Postives = 86/172 (50.00%), Query Frame = 0


Query: 4   IVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMADSGC 63
           I A+G+ +  +EA  +F+ +L    + + K Y+ +L  +A + M+ + K + K M     
Sbjct: 321 IKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRD-- 380

Query: 64  RIGPLTWD--AVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVHN 123
           RI P  W    ++  YV A ++E A+ F  K ++ +  +P   +Y  ++  YA+  DV  
Sbjct: 381 RIFPDLWSYTTMLSAYVNASDMEGAEKFF-KRIKVDGFEPNIVTYGTLIKGYAKANDVEK 440

Query: 124 AEKMFHRMRLSGYVARFSQFQALIQAYINAK--APAYGMKERMKADNVFPNK 172
             +++ +MRLSG  A  +    ++ A    K    A G  + M++  V P++
Sbjct: 441 MMEVYEKMRLSGIKANQTILTTIMDASGRCKNFGSALGWYKEMESCGVPPDQ 489

[Close]

BLAST of CmaCh06G000240 vs. ExPASy TrEMBL
Match: A0A6J1I6G4 (pentatricopeptide repeat-containing protein At1g15480, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111470066 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.2e-102
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD
Sbjct: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH
Sbjct: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI
Sbjct: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180

Query: 181 DAFRKTAVSDLLD 194
           DAFRKTAVSDLLD
Sbjct: 181 DAFRKTAVSDLLD 193

[Close]

BLAST of CmaCh06G000240 vs. ExPASy TrEMBL
Match: A0A6J1I643 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469985 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.2e-102
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD
Sbjct: 478 MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 537

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH
Sbjct: 538 SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 597

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI
Sbjct: 598 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 657

Query: 181 DAFRKTAVSDLLD 194
           DAFRKTAVSDLLD
Sbjct: 658 DAFRKTAVSDLLD 670

[Close]

BLAST of CmaCh06G000240 vs. ExPASy TrEMBL
Match: A0A6J1I2N1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111469987 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.2e-102
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD
Sbjct: 430 MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 489

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH
Sbjct: 490 SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 549

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI
Sbjct: 550 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 609

Query: 181 DAFRKTAVSDLLD 194
           DAFRKTAVSDLLD
Sbjct: 610 DAFRKTAVSDLLD 622

[Close]

BLAST of CmaCh06G000240 vs. ExPASy TrEMBL
Match: A0A6J1I524 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111469986 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.2e-102
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD
Sbjct: 430 MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 489

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH
Sbjct: 490 SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 549

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI
Sbjct: 550 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 609

Query: 181 DAFRKTAVSDLLD 194
           DAFRKTAVSDLLD
Sbjct: 610 DAFRKTAVSDLLD 622

[Close]

BLAST of CmaCh06G000240 vs. ExPASy TrEMBL
Match: A0A6J1I7V1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469985 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 5.2e-102
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD
Sbjct: 419 MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 478

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH
Sbjct: 479 SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 538

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI
Sbjct: 539 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 598

Query: 181 DAFRKTAVSDLLD 194
           DAFRKTAVSDLLD
Sbjct: 599 DAFRKTAVSDLLD 611

[Close]

BLAST of CmaCh06G000240 vs. NCBI nr
Match: XP_022971190.1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD
Sbjct: 430 MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 489

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH
Sbjct: 490 SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 549

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI
Sbjct: 550 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 609

Query: 181 DAFRKTAVSDLLD 194
           DAFRKTAVSDLLD
Sbjct: 610 DAFRKTAVSDLLD 622

[Close]

BLAST of CmaCh06G000240 vs. NCBI nr
Match: XP_022971189.1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD
Sbjct: 419 MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 478

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH
Sbjct: 479 SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 538

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI
Sbjct: 539 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 598

Query: 181 DAFRKTAVSDLLD 194
           DAFRKTAVSDLLD
Sbjct: 599 DAFRKTAVSDLLD 611

[Close]

BLAST of CmaCh06G000240 vs. NCBI nr
Match: XP_022971308.1 (pentatricopeptide repeat-containing protein At1g15480, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD
Sbjct: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH
Sbjct: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI
Sbjct: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180

Query: 181 DAFRKTAVSDLLD 194
           DAFRKTAVSDLLD
Sbjct: 181 DAFRKTAVSDLLD 193

[Close]

BLAST of CmaCh06G000240 vs. NCBI nr
Match: XP_022971188.1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD
Sbjct: 478 MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 537

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH
Sbjct: 538 SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 597

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI
Sbjct: 598 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 657

Query: 181 DAFRKTAVSDLLD 194
           DAFRKTAVSDLLD
Sbjct: 658 DAFRKTAVSDLLD 670

[Close]

BLAST of CmaCh06G000240 vs. NCBI nr
Match: XP_022971191.1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD
Sbjct: 430 MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 489

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH
Sbjct: 490 SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 549

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI
Sbjct: 550 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 609

Query: 181 DAFRKTAVSDLLD 194
           DAFRKTAVSDLLD
Sbjct: 610 DAFRKTAVSDLLD 622

[Close]

BLAST of CmaCh06G000240 vs. TAIR 10
Match: AT1G15480.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-69
Identity = 123/193 (63.73%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           +AAI+A+GK+  V++AE +F++VLK   ++SS  YS +L+VY D+KM+++GKDLVKQM+D
Sbjct: 402 LAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSD 461

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGC IG LTWDAV+KLYVEAGEVEKA+S L KA+Q  Q+KPL +S+M ++ +Y RRGDVH
Sbjct: 462 SGCNIGALTWDAVIKLYVEAGEVEKAESSLSKAIQSKQIKPLMSSFMYLMHEYVRRGDVH 521

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           N EK+F RM+ +GY +RF  +Q LIQAY+NAKAPAYGMKERMKADN+FPNK LA +LA+ 
Sbjct: 522 NTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYGMKERMKADNIFPNKRLAAQLAKA 581

Query: 181 DAFRKTAVSDLLD 194
           D F+KT +SDLLD
Sbjct: 582 DPFKKTPLSDLLD 594

[Close]

BLAST of CmaCh06G000240 vs. TAIR 10
Match: AT1G80270.1 (PENTATRICOPEPTIDE REPEAT 596 )

HSP 1 Score: 252.7 bits (644), Expect = 2.4e-67
Identity = 120/193 (62.18%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           +AAI A+GKL  VQEAE IF++++K  ++ SS  YS +L+VY D+KML+KGKDLVK+MA+
Sbjct: 404 LAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAE 463

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRI   TWDA++KLYVEAGEVEKADS L KA +++  K +  S+M I+D+Y++RGDVH
Sbjct: 464 SGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHTKLMMNSFMYIMDEYSKRGDVH 523

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           N EK+F +MR +GY +R  QFQAL+QAYINAK+PAYGM++R+KADN+FPNK++A +LAQ 
Sbjct: 524 NTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKADNIFPNKSMAAQLAQG 583

Query: 181 DAFRKTAVSDLLD 194
           D F+KTA+SD+LD
Sbjct: 584 DPFKKTAISDILD 596

[Close]

BLAST of CmaCh06G000240 vs. TAIR 10
Match: AT1G80270.2 (PENTATRICOPEPTIDE REPEAT 596 )

HSP 1 Score: 252.7 bits (644), Expect = 2.4e-67
Identity = 120/193 (62.18%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           +AAI A+GKL  VQEAE IF++++K  ++ SS  YS +L+VY D+KML+KGKDLVK+MA+
Sbjct: 404 LAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAE 463

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRI   TWDA++KLYVEAGEVEKADS L KA +++  K +  S+M I+D+Y++RGDVH
Sbjct: 464 SGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHTKLMMNSFMYIMDEYSKRGDVH 523

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           N EK+F +MR +GY +R  QFQAL+QAYINAK+PAYGM++R+KADN+FPNK++A +LAQ 
Sbjct: 524 NTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKADNIFPNKSMAAQLAQG 583

Query: 181 DAFRKTAVSDLLD 194
           D F+KTA+SD+LD
Sbjct: 584 DPFKKTAISDILD 596

[Close]

BLAST of CmaCh06G000240 vs. TAIR 10
Match: AT1G80270.3 (PENTATRICOPEPTIDE REPEAT 596 )

HSP 1 Score: 252.7 bits (644), Expect = 2.4e-67
Identity = 120/193 (62.18%), Postives = 161/193 (83.42%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           +AAI A+GKL  VQEAE IF++++K  ++ SS  YS +L+VY D+KML+KGKDLVK+MA+
Sbjct: 404 LAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAE 463

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           SGCRI   TWDA++KLYVEAGEVEKADS L KA +++  K +  S+M I+D+Y++RGDVH
Sbjct: 464 SGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQSHTKLMMNSFMYIMDEYSKRGDVH 523

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           N EK+F +MR +GY +R  QFQAL+QAYINAK+PAYGM++R+KADN+FPNK++A +LAQ 
Sbjct: 524 NTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYGMRDRLKADNIFPNKSMAAQLAQG 583

Query: 181 DAFRKTAVSDLLD 194
           D F+KTA+SD+LD
Sbjct: 584 DPFKKTAISDILD 596

[Close]

BLAST of CmaCh06G000240 vs. TAIR 10
Match: AT3G15590.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 230.7 bits (587), Expect = 9.8e-61
Identity = 107/193 (55.44%), Postives = 151/193 (78.24%), Query Frame = 0


Query: 1   MAAIVAWGKLKNVQEAEEIFDRVLKTWKKLSSKQYSTMLKVYADNKMLTKGKDLVKQMAD 60
           ++AI AWGKLK V+EAE +F+R+++ +K      Y  ++++Y +NKML KG+DLVK+M +
Sbjct: 417 ISAIKAWGKLKEVEEAEAVFERLVEKYKIFPMMPYFALMEIYTENKMLAKGRDLVKRMGN 476

Query: 61  SGCRIGPLTWDAVVKLYVEAGEVEKADSFLQKAVQKNQMKPLFTSYMVILDQYARRGDVH 120
           +G  IGP TW A+VKLY++AGEV KA+  L +A + N+M+P+FT+YM IL++YA+RGDVH
Sbjct: 477 AGIAIGPSTWHALVKLYIKAGEVGKAELILNRATKDNKMRPMFTTYMAILEEYAKRGDVH 536

Query: 121 NAEKMFHRMRLSGYVARFSQFQALIQAYINAKAPAYGMKERMKADNVFPNKALAGKLAQI 180
           N EK+F +M+ + Y A+  Q++ ++ AYINAK PAYGM ERMKADNVFPNK+LA KLAQ+
Sbjct: 537 NTEKVFMKMKRASYAAQLMQYETVLLAYINAKTPAYGMIERMKADNVFPNKSLAAKLAQV 596

Query: 181 DAFRKTAVSDLLD 194
           + F+K  VS LLD
Sbjct: 597 NPFKKCPVSVLLD 609

The following BLAST results are available for this feature:

BLAST of CmaCh06G000240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI21	2.1e-68	63.73	Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidop...	[more]
Q9C977	3.4e-66	62.18	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidop...	[more]
Q9LRP6	1.4e-59	55.44	Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidop...	[more]
Q9FVX2	1.2e-10	28.05	Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidop...	[more]
Q9LYT2	5.0e-09	26.16	Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmaCh06G000240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I6G4	5.2e-102	100.00	pentatricopeptide repeat-containing protein At1g15480, mitochondrial-like OS=Cuc...	[more]
A0A6J1I643	5.2e-102	100.00	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isofor...	[more]
A0A6J1I2N1	5.2e-102	100.00	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cuc...	[more]
A0A6J1I524	5.2e-102	100.00	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like OS=Cuc...	[more]
A0A6J1I7V1	5.2e-102	100.00	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isofor...	[more]

BLAST of CmaCh06G000240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971190.1	1.1e-101	100.00	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucur...	[more]
XP_022971189.1	1.1e-101	100.00	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isofor...	[more]
XP_022971308.1	1.1e-101	100.00	pentatricopeptide repeat-containing protein At1g15480, mitochondrial-like [Cucur...	[more]
XP_022971188.1	1.1e-101	100.00	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like isofor...	[more]
XP_022971191.1	1.1e-101	100.00	pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucur...	[more]

BLAST of CmaCh06G000240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15480.1	1.5e-69	63.73	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G80270.1	2.4e-67	62.18	PENTATRICOPEPTIDE REPEAT 596	[more]
AT1G80270.2	2.4e-67	62.18	PENTATRICOPEPTIDE REPEAT 596	[more]
AT1G80270.3	2.4e-67	62.18	PENTATRICOPEPTIDE REPEAT 596	[more]
AT3G15590.1	9.8e-61	55.44	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 35..64 e-value: 1.0E-4 score: 20.2 coord: 105..135 e-value: 5.0E-5 score: 21.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 31..65 score: 8.856788
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 102..136 score: 8.834866
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..190 e-value: 2.6E-26 score: 94.7
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 9..149 e-value: 9.5E-8 score: 31.6
None	No IPR available	PANTHER	PTHR45717	OS12G0527900 PROTEIN	coord: 1..193
None	No IPR available	PANTHER	PTHR45717:SF15	OS01G0280400 PROTEIN	coord: 1..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G000240.1	CmaCh06G000240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding