CmaCh06G000140 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G000140
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	mediator of RNA polymerase II transcription subunit 15a-like
Location	Cma_Chr06: 97097 .. 98621 (+)
RNA-Seq Expression	CmaCh06G000140
Synteny	CmaCh06G000140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTTGGAGAATCATTTCAACTCGAAATTCTTTCCTCAAACTCATGAGGCTTCACGGCTTTCTCAGATTGCAGAGCGAGCACTTCCCAAAATTGCTTGCAATTCATTGTATGGAAGAGCTTCTCCCACCTCTCCTTCAACAGATGGGCTTGGAAAAATTTCTTCAAATGTTTCCTCCCTTTGGAGCCCAATCTCTCAATTCTCTCGAGGTTATAGTTCTCTCAAGTTACTTAATTCCAAATCAGAAATCGAAGTCCCATCTCATGAGATCAGAAGCTATAACACAATGACCTGTCGGTTTGCAGAAACTACTCGTTTTGGAAACAATGGACAATTGTCAACAACAACTCAGCCTCATAATCGCTTGCTTAAAGCAGTAAGTCTGCGTTTGAGAAGAGTTTATGTTGCATTTGCGTGATCTACTAGATATTAGCATAAGATCATTCCTTTTTGTTTCTTAGGCTCTTCCTATTAGTTGATTCTGGGAGAGAACAAAATCTTGCAGGTTGAGTCAATATCAAATGAAGCATTAAGAGCAGCTATACTAGAAATAAGTTCAGTTACGAATATGGAAGACAGAATAACAGAACCGTGGTTTTGCGAAAAGGAAACACATTTAAGCCTGCAAGATGGGGGCGGTTTCTCAAAGAATATGAAGCGAAAAATGAATGCAACAACCTTAAATGACATGCCATCGCCTTGCAGTGATATTGTTGGGTCTGAACCAACAGTTACATCAATAAGCAAGAAGCTCAAGAAACTGGTAATGCATAATCTCTGTCCATCTCTTTGAAACTATTATTTCTGCCCACTTTTTATTTTCCTTTTGTCTTATAGAATTATGCTGAAAATTGTGCAGTCTGATAATGCCCTATTGGAAGAAATGAGAAACATAAACAGACATTTCATTGAAACGGTCTTAGAGTTAGATACGGACGAGAATGTCAATAGGCGATTGGCCAATGCGGGTACCGTTCTTCGATGTTCATATAGAGGTGCAACCGAAGGCAAGAATTCAGTGTTCCATTCTGAAAACAACACACTAAAGGTGAGGTTTCTAGCTATTTTTCTGCTCCTTCTTTCTCCAACTTGTAAACTAGATGCAAAAATTGACCAAAATATTTATGAAAATTTGTTTCCATTAGTTGCCAGTGCTTTCAGTGAAGCTGCTTGTGCCCCTGGATTATCCAGAAGATTACCCTGTATTCCTAAGCAAATTGAACACAGACTGCGGGTATGAATTGTTATAAATAAATGTCCTTTTTTAACAGATAGTTGAAATGCACTAGTTTACTGTACATGTTTTTAGTACTGAGGATGGAGAATTTAGAGACATGTGGAGCAAAGCGACGTCCCTGCTAAGTGCATTCCTCCGCACCTCTCCTGTCTACTTGTCTCTTGAAGAGTGTGCAAAGGCATGGGATGAATGTGCTCGCGCTGTGGTATGTGATTATGCACAACGTGCTGGCGGAGGATGCTTCAGCTCTCGATATGGGAGTTGGGAGGACTGCGCCGCTACCTGA

mRNA sequence

ATGTATTTGGAGAATCATTTCAACTCGAAATTCTTTCCTCAAACTCATGAGGCTTCACGGCTTTCTCAGATTGCAGAGCGAGCACTTCCCAAAATTGCTTGCAATTCATTGTATGGAAGAGCTTCTCCCACCTCTCCTTCAACAGATGGGCTTGGAAAAATTTCTTCAAATGTTTCCTCCCTTTGGAGCCCAATCTCTCAATTCTCTCGAGGTTATAGTTCTCTCAAGTTACTTAATTCCAAATCAGAAATCGAAGTCCCATCTCATGAGATCAGAAGCTATAACACAATGACCTGTCGGTTTGCAGAAACTACTCGTTTTGGAAACAATGGACAATTGTCAACAACAACTCAGCCTCATAATCGCTTGCTTAAAGCAGTTGAGTCAATATCAAATGAAGCATTAAGAGCAGCTATACTAGAAATAAGTTCAGTTACGAATATGGAAGACAGAATAACAGAACCGTGGTTTTGCGAAAAGGAAACACATTTAAGCCTGCAAGATGGGGGCGGTTTCTCAAAGAATATGAAGCGAAAAATGAATGCAACAACCTTAAATGACATGCCATCGCCTTGCAGTGATATTGTTGGGTCTGAACCAACAGTTACATCAATAAGCAAGAAGCTCAAGAAACTGTCTGATAATGCCCTATTGGAAGAAATGAGAAACATAAACAGACATTTCATTGAAACGGTCTTAGAGTTAGATACGGACGAGAATGTCAATAGGCGATTGGCCAATGCGGGTACCGTTCTTCGATGTTCATATAGAGGTGCAACCGAAGGCAAGAATTCAGTGTTCCATTCTGAAAACAACACACTAAAGTTGCCAGTGCTTTCAGTGAAGCTGCTTGTGCCCCTGGATTATCCAGAAGATTACCCTGTATTCCTAAGCAAATTGAACACAGACTGCGGTACTGAGGATGGAGAATTTAGAGACATGTGGAGCAAAGCGACGTCCCTGCTAAGTGCATTCCTCCGCACCTCTCCTGTCTACTTGTCTCTTGAAGAGTGTGCAAAGGCATGGGATGAATGTGCTCGCGCTGTGGTATGTGATTATGCACAACGTGCTGGCGGAGGATGCTTCAGCTCTCGATATGGGAGTTGGGAGGACTGCGCCGCTACCTGA

Coding sequence (CDS)

ATGTATTTGGAGAATCATTTCAACTCGAAATTCTTTCCTCAAACTCATGAGGCTTCACGGCTTTCTCAGATTGCAGAGCGAGCACTTCCCAAAATTGCTTGCAATTCATTGTATGGAAGAGCTTCTCCCACCTCTCCTTCAACAGATGGGCTTGGAAAAATTTCTTCAAATGTTTCCTCCCTTTGGAGCCCAATCTCTCAATTCTCTCGAGGTTATAGTTCTCTCAAGTTACTTAATTCCAAATCAGAAATCGAAGTCCCATCTCATGAGATCAGAAGCTATAACACAATGACCTGTCGGTTTGCAGAAACTACTCGTTTTGGAAACAATGGACAATTGTCAACAACAACTCAGCCTCATAATCGCTTGCTTAAAGCAGTTGAGTCAATATCAAATGAAGCATTAAGAGCAGCTATACTAGAAATAAGTTCAGTTACGAATATGGAAGACAGAATAACAGAACCGTGGTTTTGCGAAAAGGAAACACATTTAAGCCTGCAAGATGGGGGCGGTTTCTCAAAGAATATGAAGCGAAAAATGAATGCAACAACCTTAAATGACATGCCATCGCCTTGCAGTGATATTGTTGGGTCTGAACCAACAGTTACATCAATAAGCAAGAAGCTCAAGAAACTGTCTGATAATGCCCTATTGGAAGAAATGAGAAACATAAACAGACATTTCATTGAAACGGTCTTAGAGTTAGATACGGACGAGAATGTCAATAGGCGATTGGCCAATGCGGGTACCGTTCTTCGATGTTCATATAGAGGTGCAACCGAAGGCAAGAATTCAGTGTTCCATTCTGAAAACAACACACTAAAGTTGCCAGTGCTTTCAGTGAAGCTGCTTGTGCCCCTGGATTATCCAGAAGATTACCCTGTATTCCTAAGCAAATTGAACACAGACTGCGGTACTGAGGATGGAGAATTTAGAGACATGTGGAGCAAAGCGACGTCCCTGCTAAGTGCATTCCTCCGCACCTCTCCTGTCTACTTGTCTCTTGAAGAGTGTGCAAAGGCATGGGATGAATGTGCTCGCGCTGTGGTATGTGATTATGCACAACGTGCTGGCGGAGGATGCTTCAGCTCTCGATATGGGAGTTGGGAGGACTGCGCCGCTACCTGA

Protein sequence

MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSSLWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTTQPHNRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKMNATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDENVNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKLNTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGGCFSSRYGSWEDCAAT

Homology

[Close]

BLAST of CmaCh06G000140 vs. ExPASy Swiss-Prot
Match: F4I171 (Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana OX=3702 GN=MED15A PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.0e-31
Identity = 102/301 (33.89%), Postives = 150/301 (49.83%), Query Frame = 0


Query: 110  NGQLSTTTQPHNRLLKAVESISNEALRAAILEISSVTNMEDRIT-------------EPW 169
            +G+ S T  P  RL++AV+SIS +AL +A+ +I SV +M DRI              E  
Sbjct: 1037 SGKPSATELPIERLIRAVKSISPQALSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDL 1096

Query: 170  FCEKETHLS-----LQDGGGFSKNMKRKMNATTL-----------NDMPSPCSDIVGSEP 229
                +  L       Q+G   +K MKR   A  L           N      S+    E 
Sbjct: 1097 VAMTKCRLQARNFMTQEGMMATKKMKRHTTAMPLSVASLGGSVGDNYKQFAGSETSDLES 1156

Query: 230  TVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDENVN-------RRLANAGTVLR 289
            T TS  KK +  +++ALLEE++ IN+  I+TV+E+  DE+           +   GT +R
Sbjct: 1157 TATSDGKKARTETEHALLEEIKEINQRLIDTVVEISDDEDAADPSEVAISSIGCEGTTVR 1216

Query: 290  CSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKLNTDCGTEDGEFRD 349
             S+   +       H  ++T   P+  ++LLVP  YP   P  L KL  +   E+    D
Sbjct: 1217 FSFIAVSLSPALKAHL-SSTQMSPIQPLRLLVPCSYPNGSPSLLDKLPVETSKEN---ED 1276

Query: 350  MWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGGCFSSRYGSWEDCA 375
            + SKA +  +  LR+    +SL++ AK WD CARAV+C+YAQ+ GGG FSS+YG+WE   
Sbjct: 1277 LSSKAMARFNILLRSLSQPMSLKDIAKTWDACARAVICEYAQQFGGGTFSSKYGTWEKYV 1333

[Close]

BLAST of CmaCh06G000140 vs. ExPASy Swiss-Prot
Match: Q9SHV7 (Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis thaliana OX=3702 GN=MED15C PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-21
Identity = 74/283 (26.15%), Postives = 140/283 (49.47%), Query Frame = 0


Query: 116 TTQPHNRLLKAVESISNEALRAAILEISSVTNMEDRITEPW-------------FCEKET 175
           T +P +RL+KA ++ S ++L  ++ EISSV +M D I   +               E+  
Sbjct: 656 TERPIDRLIKAFQAASPKSLAESVSEISSVISMVDMIGGSFPSSGGSRAGLGEDLSERTR 715

Query: 176 HLSLQDGGGFSKNMKRKMN-----ATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDN-A 235
           + +  +    SK MKR +N      ++  D     S +     + TS   K+  ++   A
Sbjct: 716 NFTTHEETNLSKRMKRSINIVPPDMSSQIDSYEQLSSLESEVVSTTSSGLKVNNIAPGYA 775

Query: 236 LLEEMRNINRHFIETVLELDTDENVNRRLANAGTVLRCSY---------RGATEGKNSVF 295
           LL+E++  N   +ETV+E+  ++++       GT++ C+Y         +   +    +F
Sbjct: 776 LLQEIKETNGRLVETVVEICDEDSL-------GTIVTCTYAPVALSATFKDHYKSGKIIF 835

Query: 296 HSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKLNTDCGTEDGEFRDMWSKATSLLSAFLR 355
           +     ++  +  ++LL P+DYP   P+ L +++ D  T   ++ D+ ++  S  S  ++
Sbjct: 836 YVSKCLMQAQIQPLRLLFPMDYPYSSPIVLEEISFD--TSVHKYEDLSARTRSRFSLSMK 895

Query: 356 TSPVYLSLEECAKAWDECARAVVCDYAQRAGGGCFSSRYGSWE 371
                   +  A+ W++CARA + +YA+R GGG FSS+YG+WE
Sbjct: 896 EFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWE 929

[Close]

BLAST of CmaCh06G000140 vs. ExPASy TrEMBL
Match: A0A6J1I7U8 (mediator of RNA polymerase II transcription subunit 15a isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469984 PE=4 SV=1)

HSP 1 Score: 747.3 bits (1928), Expect = 3.2e-212
Identity = 374/375 (99.73%), Postives = 374/375 (99.73%), Query Frame = 0


Query: 1   MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 60
           MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS
Sbjct: 325 MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 384

Query: 61  LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTTQPH 120
           LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCR AETTRFGNNGQLSTTTQPH
Sbjct: 385 LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRLAETTRFGNNGQLSTTTQPH 444

Query: 121 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 180
           NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM
Sbjct: 445 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 504

Query: 181 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 240
           NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN
Sbjct: 505 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 564

Query: 241 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 300
           VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL
Sbjct: 565 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 624

Query: 301 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 360
           NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG
Sbjct: 625 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 684

Query: 361 CFSSRYGSWEDCAAT 376
           CFSSRYGSWEDCAAT
Sbjct: 685 CFSSRYGSWEDCAAT 699

[Close]

BLAST of CmaCh06G000140 vs. ExPASy TrEMBL
Match: A0A6J1I7W8 (mediator of RNA polymerase II transcription subunit 15a-like OS=Cucurbita maxima OX=3661 GN=LOC111469996 PE=4 SV=1)

HSP 1 Score: 670.6 bits (1729), Expect = 3.8e-189
Identity = 343/375 (91.47%), Postives = 343/375 (91.47%), Query Frame = 0


Query: 1   MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 60
           MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS
Sbjct: 1   MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 60

Query: 61  LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTTQPH 120
           LWSPISQFSR                                ETTRFGNNGQLSTTTQPH
Sbjct: 61  LWSPISQFSR--------------------------------ETTRFGNNGQLSTTTQPH 120

Query: 121 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 180
           NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM
Sbjct: 121 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 180

Query: 181 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 240
           NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN
Sbjct: 181 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 240

Query: 241 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 300
           VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL
Sbjct: 241 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 300

Query: 301 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 360
           NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG
Sbjct: 301 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 343

Query: 361 CFSSRYGSWEDCAAT 376
           CFSSRYGSWEDCAAT
Sbjct: 361 CFSSRYGSWEDCAAT 343

[Close]

BLAST of CmaCh06G000140 vs. ExPASy TrEMBL
Match: A0A6J1EZU5 (mediator of RNA polymerase II transcription subunit 15a isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111440856 PE=4 SV=1)

HSP 1 Score: 645.2 bits (1663), Expect = 1.7e-181
Identity = 333/375 (88.80%), Postives = 337/375 (89.87%), Query Frame = 0


Query: 1   MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 60
           MYLENHFNSKF PQTHEASRLSQIAERALPKIACNSLYGRASPT PSTDGLGKISSNVSS
Sbjct: 325 MYLENHFNSKFSPQTHEASRLSQIAERALPKIACNSLYGRASPTFPSTDGLGKISSNVSS 384

Query: 61  LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTTQPH 120
           LWSPISQFS+                                ETTRFGNNGQLS TTQPH
Sbjct: 385 LWSPISQFSQ--------------------------------ETTRFGNNGQLS-TTQPH 444

Query: 121 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 180
           NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGG SKNMKRKM
Sbjct: 445 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGSSKNMKRKM 504

Query: 181 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 240
           NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN
Sbjct: 505 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 564

Query: 241 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 300
           VNRRLANAGTVLRCSYR ATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL
Sbjct: 565 VNRRLANAGTVLRCSYRAATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 624

Query: 301 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 360
           NT+CGTED EFRDMWSKATSLL+AFLRT+PVYLSLEECAKAWDECARAVVCDYAQRAGGG
Sbjct: 625 NTECGTEDEEFRDMWSKATSLLNAFLRTAPVYLSLEECAKAWDECARAVVCDYAQRAGGG 666

Query: 361 CFSSRYGSWEDCAAT 376
           CFSSRYGSWEDCAAT
Sbjct: 685 CFSSRYGSWEDCAAT 666

[Close]

BLAST of CmaCh06G000140 vs. ExPASy TrEMBL
Match: A0A6J1D158 (probable mediator of RNA polymerase II transcription subunit 15c isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016654 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 1.0e-122
Identity = 254/382 (66.49%), Postives = 293/382 (76.70%), Query Frame = 0


Query: 3   LENHFNSKFFPQTH-EASRLSQIAERALPKIACNSLY---GRASPT-SPSTDGLGKISSN 62
           L+NH NSK  PQ+H EAS+LS+IAERAL K  C+S+Y   GRASPT S ST GLGK SSN
Sbjct: 481 LQNHLNSKHSPQSHEEASQLSKIAERALSKDPCSSVYGRDGRASPTPSSSTVGLGKSSSN 540

Query: 63  VSSLWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTT 122
           VS L S   Q+    +S+ LLNSK++I+V SHEIRS    T +FAE T  G++  LST T
Sbjct: 541 VSCLSSLNFQYPETRNSVNLLNSKTKIQVKSHEIRSSGISTSQFAEPTSLGSSQHLSTAT 600

Query: 123 QPHNRLLKAVESISNEALRAAILEISSVTNMEDRITEPWF----C-EKETHLSLQDGGGF 182
           QP NRLLKAV+S+S++ALR AI  ISSV NM D +TEP      C +K  HLSLQDG G 
Sbjct: 601 QPLNRLLKAVDSMSDQALRTAISGISSVGNMCDTVTEPSVFGTRCHQKAAHLSLQDGFGS 660

Query: 183 SKNMKRKMNATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETV 242
           S NMKRK+ A TLNDMPSPCSD  GSE TVTS SKKLKKL+DNALLEEMRNIN+  +ETV
Sbjct: 661 SNNMKRKICAITLNDMPSPCSDNDGSELTVTSRSKKLKKLTDNALLEEMRNINQRLVETV 720

Query: 243 LELDTDENVNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPED 302
           LELD+ +NVNRR ANAGTV+RC+Y   ++  N +FH   NTLKLPVLSVKLLVPLDYPED
Sbjct: 721 LELDSAQNVNRRFANAGTVVRCTYSAVSDRNNLMFHFA-NTLKLPVLSVKLLVPLDYPED 780

Query: 303 YPVFLSKLNTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCD 362
           YPVFLSK NTDCG ED E RD+  KATS+L AFLRT+P  LSL E A+AWD+CAR VV +
Sbjct: 781 YPVFLSKFNTDCGNEDEECRDLSRKATSMLRAFLRTAPERLSLGEYARAWDQCARYVVSE 840

Query: 363 YAQRAGGGCFSSRYGSWEDCAA 375
           YAQR GGGCFSSRYG+WEDC A
Sbjct: 841 YAQRTGGGCFSSRYGTWEDCVA 861

[Close]

BLAST of CmaCh06G000140 vs. ExPASy TrEMBL
Match: A0A6J1D3G7 (mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016654 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 1.0e-122
Identity = 254/382 (66.49%), Postives = 293/382 (76.70%), Query Frame = 0


Query: 3   LENHFNSKFFPQTH-EASRLSQIAERALPKIACNSLY---GRASPT-SPSTDGLGKISSN 62
           L+NH NSK  PQ+H EAS+LS+IAERAL K  C+S+Y   GRASPT S ST GLGK SSN
Sbjct: 426 LQNHLNSKHSPQSHEEASQLSKIAERALSKDPCSSVYGRDGRASPTPSSSTVGLGKSSSN 485

Query: 63  VSSLWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTT 122
           VS L S   Q+    +S+ LLNSK++I+V SHEIRS    T +FAE T  G++  LST T
Sbjct: 486 VSCLSSLNFQYPETRNSVNLLNSKTKIQVKSHEIRSSGISTSQFAEPTSLGSSQHLSTAT 545

Query: 123 QPHNRLLKAVESISNEALRAAILEISSVTNMEDRITEPWF----C-EKETHLSLQDGGGF 182
           QP NRLLKAV+S+S++ALR AI  ISSV NM D +TEP      C +K  HLSLQDG G 
Sbjct: 546 QPLNRLLKAVDSMSDQALRTAISGISSVGNMCDTVTEPSVFGTRCHQKAAHLSLQDGFGS 605

Query: 183 SKNMKRKMNATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETV 242
           S NMKRK+ A TLNDMPSPCSD  GSE TVTS SKKLKKL+DNALLEEMRNIN+  +ETV
Sbjct: 606 SNNMKRKICAITLNDMPSPCSDNDGSELTVTSRSKKLKKLTDNALLEEMRNINQRLVETV 665

Query: 243 LELDTDENVNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPED 302
           LELD+ +NVNRR ANAGTV+RC+Y   ++  N +FH   NTLKLPVLSVKLLVPLDYPED
Sbjct: 666 LELDSAQNVNRRFANAGTVVRCTYSAVSDRNNLMFHFA-NTLKLPVLSVKLLVPLDYPED 725

Query: 303 YPVFLSKLNTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCD 362
           YPVFLSK NTDCG ED E RD+  KATS+L AFLRT+P  LSL E A+AWD+CAR VV +
Sbjct: 726 YPVFLSKFNTDCGNEDEECRDLSRKATSMLRAFLRTAPERLSLGEYARAWDQCARYVVSE 785

Query: 363 YAQRAGGGCFSSRYGSWEDCAA 375
           YAQR GGGCFSSRYG+WEDC A
Sbjct: 786 YAQRTGGGCFSSRYGTWEDCVA 806

[Close]

BLAST of CmaCh06G000140 vs. NCBI nr
Match: XP_022971183.1 (mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucurbita maxima] >XP_022971184.1 mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucurbita maxima])

HSP 1 Score: 747.3 bits (1928), Expect = 6.5e-212
Identity = 374/375 (99.73%), Postives = 374/375 (99.73%), Query Frame = 0


Query: 1   MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 60
           MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS
Sbjct: 325 MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 384

Query: 61  LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTTQPH 120
           LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCR AETTRFGNNGQLSTTTQPH
Sbjct: 385 LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRLAETTRFGNNGQLSTTTQPH 444

Query: 121 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 180
           NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM
Sbjct: 445 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 504

Query: 181 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 240
           NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN
Sbjct: 505 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 564

Query: 241 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 300
           VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL
Sbjct: 565 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 624

Query: 301 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 360
           NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG
Sbjct: 625 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 684

Query: 361 CFSSRYGSWEDCAAT 376
           CFSSRYGSWEDCAAT
Sbjct: 685 CFSSRYGSWEDCAAT 699

[Close]

BLAST of CmaCh06G000140 vs. NCBI nr
Match: XP_022971204.1 (mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita maxima])

HSP 1 Score: 670.6 bits (1729), Expect = 7.8e-189
Identity = 343/375 (91.47%), Postives = 343/375 (91.47%), Query Frame = 0


Query: 1   MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 60
           MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS
Sbjct: 1   MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 60

Query: 61  LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTTQPH 120
           LWSPISQFSR                                ETTRFGNNGQLSTTTQPH
Sbjct: 61  LWSPISQFSR--------------------------------ETTRFGNNGQLSTTTQPH 120

Query: 121 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 180
           NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM
Sbjct: 121 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 180

Query: 181 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 240
           NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN
Sbjct: 181 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 240

Query: 241 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 300
           VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL
Sbjct: 241 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 300

Query: 301 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 360
           NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG
Sbjct: 301 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 343

Query: 361 CFSSRYGSWEDCAAT 376
           CFSSRYGSWEDCAAT
Sbjct: 361 CFSSRYGSWEDCAAT 343

[Close]

BLAST of CmaCh06G000140 vs. NCBI nr
Match: XP_022933464.1 (mediator of RNA polymerase II transcription subunit 15a isoform X3 [Cucurbita moschata])

HSP 1 Score: 645.2 bits (1663), Expect = 3.5e-181
Identity = 333/375 (88.80%), Postives = 337/375 (89.87%), Query Frame = 0


Query: 1   MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 60
           MYLENHFNSKF PQTHEASRLSQIAERALPKIACNSLYGRASPT PSTDGLGKISSNVSS
Sbjct: 325 MYLENHFNSKFSPQTHEASRLSQIAERALPKIACNSLYGRASPTFPSTDGLGKISSNVSS 384

Query: 61  LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTTQPH 120
           LWSPISQFS+                                ETTRFGNNGQLS TTQPH
Sbjct: 385 LWSPISQFSQ--------------------------------ETTRFGNNGQLS-TTQPH 444

Query: 121 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 180
           NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGG SKNMKRKM
Sbjct: 445 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGSSKNMKRKM 504

Query: 181 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 240
           NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN
Sbjct: 505 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 564

Query: 241 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 300
           VNRRLANAGTVLRCSYR ATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL
Sbjct: 565 VNRRLANAGTVLRCSYRAATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 624

Query: 301 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 360
           NT+CGTED EFRDMWSKATSLL+AFLRT+PVYLSLEECAKAWDECARAVVCDYAQRAGGG
Sbjct: 625 NTECGTEDEEFRDMWSKATSLLNAFLRTAPVYLSLEECAKAWDECARAVVCDYAQRAGGG 666

Query: 361 CFSSRYGSWEDCAAT 376
           CFSSRYGSWEDCAAT
Sbjct: 685 CFSSRYGSWEDCAAT 666

[Close]

BLAST of CmaCh06G000140 vs. NCBI nr
Match: KAG7027708.1 (Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 640.6 bits (1651), Expect = 8.6e-180
Identity = 331/375 (88.27%), Postives = 335/375 (89.33%), Query Frame = 0


Query: 1   MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 60
           MYLENHFNSKF PQTHEASRLSQIAERALPKIACNSLYGRASPT PSTDGLGKISSNVSS
Sbjct: 296 MYLENHFNSKFSPQTHEASRLSQIAERALPKIACNSLYGRASPTFPSTDGLGKISSNVSS 355

Query: 61  LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTTQPH 120
           LWSPISQFS+                                ETTRFGNNGQLS TTQPH
Sbjct: 356 LWSPISQFSQ--------------------------------ETTRFGNNGQLS-TTQPH 415

Query: 121 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 180
           NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGG SKNMKRKM
Sbjct: 416 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGSSKNMKRKM 475

Query: 181 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 240
           NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN
Sbjct: 476 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 535

Query: 241 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 300
           VNRRLANAGTVLRCSYR ATEGKNSV HSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL
Sbjct: 536 VNRRLANAGTVLRCSYRAATEGKNSVIHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 595

Query: 301 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 360
           NT+CGTED EFRDMWSKATSLL+A LRT+PVYLSLEECAKAWDECARAVVCDYAQRAGGG
Sbjct: 596 NTECGTEDEEFRDMWSKATSLLNALLRTAPVYLSLEECAKAWDECARAVVCDYAQRAGGG 637

Query: 361 CFSSRYGSWEDCAAT 376
           CFSSRYGSWEDCAAT
Sbjct: 656 CFSSRYGSWEDCAAT 637

[Close]

BLAST of CmaCh06G000140 vs. NCBI nr
Match: KAG6596167.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 640.2 bits (1650), Expect = 1.1e-179
Identity = 331/375 (88.27%), Postives = 335/375 (89.33%), Query Frame = 0


Query: 1   MYLENHFNSKFFPQTHEASRLSQIAERALPKIACNSLYGRASPTSPSTDGLGKISSNVSS 60
           MYLENHFNSKF PQTHEASRLSQIAERALPKIACNSLYGRASPT PSTDGLGKISSNVSS
Sbjct: 325 MYLENHFNSKFSPQTHEASRLSQIAERALPKIACNSLYGRASPTFPSTDGLGKISSNVSS 384

Query: 61  LWSPISQFSRGYSSLKLLNSKSEIEVPSHEIRSYNTMTCRFAETTRFGNNGQLSTTTQPH 120
           LWSPISQFS+                                ETTRFGNNGQLS TTQPH
Sbjct: 385 LWSPISQFSQ--------------------------------ETTRFGNNGQLS-TTQPH 444

Query: 121 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGFSKNMKRKM 180
           NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGG SKNMKRKM
Sbjct: 445 NRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGSSKNMKRKM 504

Query: 181 NATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 240
           NATTLN MPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN
Sbjct: 505 NATTLNGMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDEN 564

Query: 241 VNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 300
           VNRRLANAGTVLRCSYR ATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL
Sbjct: 565 VNRRLANAGTVLRCSYRAATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKL 624

Query: 301 NTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGG 360
           NT+CGTED EFRDMWSKATSLL+A LRT+PVYLSLEECAKAWDECARAVVCDYAQRAGGG
Sbjct: 625 NTECGTEDEEFRDMWSKATSLLNALLRTAPVYLSLEECAKAWDECARAVVCDYAQRAGGG 666

Query: 361 CFSSRYGSWEDCAAT 376
           CFSSRYGSWEDCAAT
Sbjct: 685 CFSSRYGSWEDCAAT 666

[Close]

BLAST of CmaCh06G000140 vs. TAIR 10
Match: AT1G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). )

HSP 1 Score: 137.1 bits (344), Expect = 2.9e-32
Identity = 102/301 (33.89%), Postives = 150/301 (49.83%), Query Frame = 0


Query: 110  NGQLSTTTQPHNRLLKAVESISNEALRAAILEISSVTNMEDRIT-------------EPW 169
            +G+ S T  P  RL++AV+SIS +AL +A+ +I SV +M DRI              E  
Sbjct: 1037 SGKPSATELPIERLIRAVKSISPQALSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDL 1096

Query: 170  FCEKETHLS-----LQDGGGFSKNMKRKMNATTL-----------NDMPSPCSDIVGSEP 229
                +  L       Q+G   +K MKR   A  L           N      S+    E 
Sbjct: 1097 VAMTKCRLQARNFMTQEGMMATKKMKRHTTAMPLSVASLGGSVGDNYKQFAGSETSDLES 1156

Query: 230  TVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDENVN-------RRLANAGTVLR 289
            T TS  KK +  +++ALLEE++ IN+  I+TV+E+  DE+           +   GT +R
Sbjct: 1157 TATSDGKKARTETEHALLEEIKEINQRLIDTVVEISDDEDAADPSEVAISSIGCEGTTVR 1216

Query: 290  CSYRGATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKLNTDCGTEDGEFRD 349
             S+   +       H  ++T   P+  ++LLVP  YP   P  L KL  +   E+    D
Sbjct: 1217 FSFIAVSLSPALKAHL-SSTQMSPIQPLRLLVPCSYPNGSPSLLDKLPVETSKEN---ED 1276

Query: 350  MWSKATSLLSAFLRTSPVYLSLEECAKAWDECARAVVCDYAQRAGGGCFSSRYGSWEDCA 375
            + SKA +  +  LR+    +SL++ AK WD CARAV+C+YAQ+ GGG FSS+YG+WE   
Sbjct: 1277 LSSKAMARFNILLRSLSQPMSLKDIAKTWDACARAVICEYAQQFGGGTFSSKYGTWEKYV 1333

[Close]

BLAST of CmaCh06G000140 vs. TAIR 10
Match: AT2G10440.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 1628 Blast hits to 1350 proteins in 149 species: Archae - 0; Bacteria - 39; Metazoa - 480; Fungi - 159; Plants - 187; Viruses - 2; Other Eukaryotes - 761 (source: NCBI BLink). )

HSP 1 Score: 105.9 bits (263), Expect = 7.1e-23
Identity = 76/275 (27.64%), Postives = 140/275 (50.91%), Query Frame = 0


Query: 116 TTQPHNRLLKAVESISNEALRAAILEISSVTNMEDRITEPW-------------FCEKET 175
           T +P +RL+KA ++ S ++L  ++ EISSV +M D I   +               E+  
Sbjct: 576 TERPIDRLIKAFQAASPKSLAESVSEISSVISMVDMIGGSFPSSGGSRAGLGEDLSERTR 635

Query: 176 HLSLQDGGGFSKNMKRKMN-----ATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDN-A 235
           + +  +    SK MKR +N      ++  D     S +     + TS   K+  ++   A
Sbjct: 636 NFTTHEETNLSKRMKRSINIVPPDMSSQIDSYEQLSSLESEVVSTTSSGLKVNNIAPGYA 695

Query: 236 LLEEMRNINRHFIETVLELDTDENVNRRLANAGTVLRCSYRGATEGKNSVFHSENNTLKL 295
           LL+E++  N   +ETV+E+  ++++       GT++ C+Y  A    ++ F     + K+
Sbjct: 696 LLQEIKETNGRLVETVVEICDEDSL-------GTIVTCTY--APVALSATFKDHYKSGKI 755

Query: 296 -PVLSVKLLVPLDYPEDYPVFLSKLNTDCGTEDGEFRDMWSKATSLLSAFLRTSPVYLSL 355
             +  ++LL P+DYP   P+ L +++ D  T   ++ D+ ++  S  S  ++        
Sbjct: 756 AQIQPLRLLFPMDYPYSSPIVLEEISFD--TSVHKYEDLSARTRSRFSLSMKEFSEPGFS 815

Query: 356 EECAKAWDECARAVVCDYAQRAGGGCFSSRYGSWE 371
           +  A+ W++CARA + +YA+R GGG FSS+YG+WE
Sbjct: 816 KGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWE 839

[Close]

BLAST of CmaCh06G000140 vs. TAIR 10
Match: AT2G10440.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15780.1); Has 8319 Blast hits to 5104 proteins in 317 species: Archae - 0; Bacteria - 285; Metazoa - 1706; Fungi - 535; Plants - 320; Viruses - 18; Other Eukaryotes - 5455 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-22
Identity = 74/283 (26.15%), Postives = 140/283 (49.47%), Query Frame = 0


Query: 116 TTQPHNRLLKAVESISNEALRAAILEISSVTNMEDRITEPW-------------FCEKET 175
           T +P +RL+KA ++ S ++L  ++ EISSV +M D I   +               E+  
Sbjct: 656 TERPIDRLIKAFQAASPKSLAESVSEISSVISMVDMIGGSFPSSGGSRAGLGEDLSERTR 715

Query: 176 HLSLQDGGGFSKNMKRKMN-----ATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDN-A 235
           + +  +    SK MKR +N      ++  D     S +     + TS   K+  ++   A
Sbjct: 716 NFTTHEETNLSKRMKRSINIVPPDMSSQIDSYEQLSSLESEVVSTTSSGLKVNNIAPGYA 775

Query: 236 LLEEMRNINRHFIETVLELDTDENVNRRLANAGTVLRCSY---------RGATEGKNSVF 295
           LL+E++  N   +ETV+E+  ++++       GT++ C+Y         +   +    +F
Sbjct: 776 LLQEIKETNGRLVETVVEICDEDSL-------GTIVTCTYAPVALSATFKDHYKSGKIIF 835

Query: 296 HSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKLNTDCGTEDGEFRDMWSKATSLLSAFLR 355
           +     ++  +  ++LL P+DYP   P+ L +++ D  T   ++ D+ ++  S  S  ++
Sbjct: 836 YVSKCLMQAQIQPLRLLFPMDYPYSSPIVLEEISFD--TSVHKYEDLSARTRSRFSLSMK 895

Query: 356 TSPVYLSLEECAKAWDECARAVVCDYAQRAGGGCFSSRYGSWE 371
                   +  A+ W++CARA + +YA+R GGG FSS+YG+WE
Sbjct: 896 EFSEPGFSKGIAQTWNDCARATMVEYAERHGGGTFSSKYGAWE 929

The following BLAST results are available for this feature:

BLAST of CmaCh06G000140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I171	4.0e-31	33.89	Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana ...	[more]
Q9SHV7	2.2e-21	26.15	Probable mediator of RNA polymerase II transcription subunit 15c OS=Arabidopsis ...	[more]

BLAST of CmaCh06G000140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7U8	3.2e-212	99.73	mediator of RNA polymerase II transcription subunit 15a isoform X1 OS=Cucurbita ...	[more]
A0A6J1I7W8	3.8e-189	91.47	mediator of RNA polymerase II transcription subunit 15a-like OS=Cucurbita maxima...	[more]
A0A6J1EZU5	1.7e-181	88.80	mediator of RNA polymerase II transcription subunit 15a isoform X3 OS=Cucurbita ...	[more]
A0A6J1D158	1.0e-122	66.49	probable mediator of RNA polymerase II transcription subunit 15c isoform X1 OS=M...	[more]
A0A6J1D3G7	1.0e-122	66.49	mediator of RNA polymerase II transcription subunit 15a-like isoform X2 OS=Momor...	[more]

BLAST of CmaCh06G000140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971183.1	6.5e-212	99.73	mediator of RNA polymerase II transcription subunit 15a isoform X1 [Cucurbita ma...	[more]
XP_022971204.1	7.8e-189	91.47	mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita maxima]	[more]
XP_022933464.1	3.5e-181	88.80	mediator of RNA polymerase II transcription subunit 15a isoform X3 [Cucurbita mo...	[more]
KAG7027708.1	8.6e-180	88.27	Mediator of RNA polymerase II transcription subunit 15a [Cucurbita argyrosperma ...	[more]
KAG6596167.1	1.1e-179	88.27	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]

BLAST of CmaCh06G000140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15780.1	2.9e-32	33.89	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G10440.2	7.1e-23	27.64	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G10440.1	1.6e-22	26.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044661	Mediator of RNA polymerase II transcription subunit 15a/b/c-like	PANTHER	PTHR33137	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 93..367
None	No IPR available	PANTHER	PTHR33137:SF4	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	coord: 93..367

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G000140.1	CmaCh06G000140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0003713	transcription coactivator activity