CmaCh05G014250 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G014250
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCma_Chr05: 10555494 .. 10557278 (+)
RNA-Seq ExpressionCmaCh05G014250
SyntenyCmaCh05G014250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAGTAGAGAGTTGAAGCAAGAATCAGTCACACAATCTGAGGGACCGAACAGAATACCTGGGTGTAAACGAGCAAGGATTGTGATTGAGAATATATGGGAAGATAGAGCAGAGCCCAGTGATGGCGTGGGGCTGCAAATGACCCTTTTGTTCTTCTCTAGCCGTGCCTGCAGGTTTCGAGCCTCCAATTTCTTCATTGCCCAGTTTTATAGCATTGCAGACGGAGTATCCCGCGCTCGACCTTTTTGTGATAGAGAGGTAATCCGAAACCCGGAGTCTTGGCTAGTGAAGGTTGTTTGCACTCTCTTTTTTCGATCGCATTCCCTTAATGCTTGCTTTGGTTATCTAAGTAGAAACTTGAACCCTTCAATCGCTTTCGAGGTTATTAAGCGGTTTAGAGATCCATTATTAGGTTTGAAGTTTTTTGAGTTTAGTAGAACACACCTGAGCATTAACCATACTTTTAATACCTATGATTTGCTCGTGAGGAATCTCTGTCAAATGGGTCTCAACGATTCTGCAAAAACTGTGTTCGATTGCATGAGGACTGATGGGATATTGCCGGATAGTTCCATAGTAGAAATTTTGGTGTCTTCATACGCTCAATTGGGGAAGTTAGATGCTGCCAAAAATTTTCTTGATGAGATTCACTGTTATGGTATTAAAGTGATTCCTTTTGTATACAATAACTTTTTGAATATGTTGGTCAAGCAGAACCAAGTAGATGAAGCTGTCTTGCTATTCAGAGAGCACTTGGAACCATATTTTACTCCAGATGTTTACACCTTCAATATACTAATTAGAGGATTGTGCAGAATAGGAGAAACCGATAAGGCGTTTGAGTATTTACAGAATATGGAAAATTTTGGTTGCTTTCCTGATATTGTTTCATATAATACGCTTATAAATGGGTTTTGCAGAGTTAATGAGGTTAGTAAGGGGCATGATTTGTTAAAAGAAGTTCAGTCAATAAAAGGGGTTTCCCCAGATGTTATAACGTACACATCGATTATATCTGGCTATTGCAAGTTGGGTGACATGAAGGCAGCTTCTGAGCTTTTTGATGAGATGGTTAGTTCTGGAATCAAACCCAACGACTTCACTTTCAATGTTCTCATTGATGGTTTTGGTAAAGCTGGAGAAATGAGATTGGCTTTGGCCATGTACGACAAAATGCTTCTTCTCGGCTGTCTACCAGATGTGGTTACGGTCACTTCCCTGATTGATGGCTATTGCCGGGCGGGTGAAGTGAATCAAGGTTTGAAGCTCTGGGAGGAGATGAAAGTAAGAGACCTGTCTCCAAATGTTTATACCTATGCTGTTCTCATTAACGCTCTCTGTAAGGAAAATAGAATACAAGAGGCAAGAAACTTTTTGAGGCATTTGAAATTGAGTGAGATTGTTCCTAAACCATTTATTTATAATCCTGTGATTGATGGGTTTTGCAAGGCTGGGAAGGTGGATGAGGCAAATGTCATAGTGGCTGAAATGCAGGAGAAAAAATGCCGCCCAGACAAAATAACATTTACCATCCTAATTATAGGCAACTGTATGAAAGGGAGAATGGTCGAAGCAATTAACATTTTTTATAAGATGTTGGAAACCAAGTGTATTCCAGATGAAATAACTATTAATTCTTTGATATCTTGCCTTCTGAAGGCTGGAATGCCTGATGAAGCCTCTCAAATCAAGCAAGCTGCTTTGGAATACCTGAACTTCGACTTGTTATCGTTGAAGAATCCACTTACAATAAAATCTTCATGTGTGCCAGTTGCTATTTGA

mRNA sequence

ATGAAGAGTAGAGAGTTGAAGCAAGAATCAGTCACACAATCTGAGGGACCGAACAGAATACCTGGGTGTAAACGAGCAAGGATTGTGATTGAGAATATATGGGAAGATAGAGCAGAGCCCAGTGATGGCGTGGGGCTGCAAATGACCCTTTTGTTCTTCTCTAGCCGTGCCTGCAGGTTTCGAGCCTCCAATTTCTTCATTGCCCAGTTTTATAGCATTGCAGACGGAGTATCCCGCGCTCGACCTTTTTGTGATAGAGAGGTAATCCGAAACCCGGAGTCTTGGCTAGTGAAGGTTGTTTGCACTCTCTTTTTTCGATCGCATTCCCTTAATGCTTGCTTTGGTTATCTAAGTAGAAACTTGAACCCTTCAATCGCTTTCGAGGTTATTAAGCGGTTTAGAGATCCATTATTAGGTTTGAAGTTTTTTGAGTTTAGTAGAACACACCTGAGCATTAACCATACTTTTAATACCTATGATTTGCTCGTGAGGAATCTCTGTCAAATGGGTCTCAACGATTCTGCAAAAACTGTGTTCGATTGCATGAGGACTGATGGGATATTGCCGGATAGTTCCATAGTAGAAATTTTGGTGTCTTCATACGCTCAATTGGGGAAGTTAGATGCTGCCAAAAATTTTCTTGATGAGATTCACTGTTATGGTATTAAAGTGATTCCTTTTGTATACAATAACTTTTTGAATATGTTGGTCAAGCAGAACCAAGTAGATGAAGCTGTCTTGCTATTCAGAGAGCACTTGGAACCATATTTTACTCCAGATGTTTACACCTTCAATATACTAATTAGAGGATTGTGCAGAATAGGAGAAACCGATAAGGCGTTTGAGTATTTACAGAATATGGAAAATTTTGGTTGCTTTCCTGATATTGTTTCATATAATACGCTTATAAATGGGTTTTGCAGAGTTAATGAGGTTAGTAAGGGGCATGATTTGTTAAAAGAAGTTCAGTCAATAAAAGGGGTTTCCCCAGATGTTATAACGTACACATCGATTATATCTGGCTATTGCAAGTTGGGTGACATGAAGGCAGCTTCTGAGCTTTTTGATGAGATGGTTAGTTCTGGAATCAAACCCAACGACTTCACTTTCAATGTTCTCATTGATGGTTTTGGTAAAGCTGGAGAAATGAGATTGGCTTTGGCCATGTACGACAAAATGCTTCTTCTCGGCTGTCTACCAGATGTGGTTACGGTCACTTCCCTGATTGATGGCTATTGCCGGGCGGGTGAAGTGAATCAAGGTTTGAAGCTCTGGGAGGAGATGAAAGTAAGAGACCTGTCTCCAAATGTTTATACCTATGCTGTTCTCATTAACGCTCTCTGTAAGGAAAATAGAATACAAGAGGCAAGAAACTTTTTGAGGCATTTGAAATTGAGTGAGATTGTTCCTAAACCATTTATTTATAATCCTGTGATTGATGGGTTTTGCAAGGCTGGGAAGGTGGATGAGGCAAATGTCATAGTGGCTGAAATGCAGGAGAAAAAATGCCGCCCAGACAAAATAACATTTACCATCCTAATTATAGGCAACTGTATGAAAGGGAGAATGGTCGAAGCAATTAACATTTTTTATAAGATGTTGGAAACCAAGTGTATTCCAGATGAAATAACTATTAATTCTTTGATATCTTGCCTTCTGAAGGCTGGAATGCCTGATGAAGCCTCTCAAATCAAGCAAGCTGCTTTGGAATACCTGAACTTCGACTTGTTATCGTTGAAGAATCCACTTACAATAAAATCTTCATGTGTGCCAGTTGCTATTTGA

Coding sequence (CDS)

ATGAAGAGTAGAGAGTTGAAGCAAGAATCAGTCACACAATCTGAGGGACCGAACAGAATACCTGGGTGTAAACGAGCAAGGATTGTGATTGAGAATATATGGGAAGATAGAGCAGAGCCCAGTGATGGCGTGGGGCTGCAAATGACCCTTTTGTTCTTCTCTAGCCGTGCCTGCAGGTTTCGAGCCTCCAATTTCTTCATTGCCCAGTTTTATAGCATTGCAGACGGAGTATCCCGCGCTCGACCTTTTTGTGATAGAGAGGTAATCCGAAACCCGGAGTCTTGGCTAGTGAAGGTTGTTTGCACTCTCTTTTTTCGATCGCATTCCCTTAATGCTTGCTTTGGTTATCTAAGTAGAAACTTGAACCCTTCAATCGCTTTCGAGGTTATTAAGCGGTTTAGAGATCCATTATTAGGTTTGAAGTTTTTTGAGTTTAGTAGAACACACCTGAGCATTAACCATACTTTTAATACCTATGATTTGCTCGTGAGGAATCTCTGTCAAATGGGTCTCAACGATTCTGCAAAAACTGTGTTCGATTGCATGAGGACTGATGGGATATTGCCGGATAGTTCCATAGTAGAAATTTTGGTGTCTTCATACGCTCAATTGGGGAAGTTAGATGCTGCCAAAAATTTTCTTGATGAGATTCACTGTTATGGTATTAAAGTGATTCCTTTTGTATACAATAACTTTTTGAATATGTTGGTCAAGCAGAACCAAGTAGATGAAGCTGTCTTGCTATTCAGAGAGCACTTGGAACCATATTTTACTCCAGATGTTTACACCTTCAATATACTAATTAGAGGATTGTGCAGAATAGGAGAAACCGATAAGGCGTTTGAGTATTTACAGAATATGGAAAATTTTGGTTGCTTTCCTGATATTGTTTCATATAATACGCTTATAAATGGGTTTTGCAGAGTTAATGAGGTTAGTAAGGGGCATGATTTGTTAAAAGAAGTTCAGTCAATAAAAGGGGTTTCCCCAGATGTTATAACGTACACATCGATTATATCTGGCTATTGCAAGTTGGGTGACATGAAGGCAGCTTCTGAGCTTTTTGATGAGATGGTTAGTTCTGGAATCAAACCCAACGACTTCACTTTCAATGTTCTCATTGATGGTTTTGGTAAAGCTGGAGAAATGAGATTGGCTTTGGCCATGTACGACAAAATGCTTCTTCTCGGCTGTCTACCAGATGTGGTTACGGTCACTTCCCTGATTGATGGCTATTGCCGGGCGGGTGAAGTGAATCAAGGTTTGAAGCTCTGGGAGGAGATGAAAGTAAGAGACCTGTCTCCAAATGTTTATACCTATGCTGTTCTCATTAACGCTCTCTGTAAGGAAAATAGAATACAAGAGGCAAGAAACTTTTTGAGGCATTTGAAATTGAGTGAGATTGTTCCTAAACCATTTATTTATAATCCTGTGATTGATGGGTTTTGCAAGGCTGGGAAGGTGGATGAGGCAAATGTCATAGTGGCTGAAATGCAGGAGAAAAAATGCCGCCCAGACAAAATAACATTTACCATCCTAATTATAGGCAACTGTATGAAAGGGAGAATGGTCGAAGCAATTAACATTTTTTATAAGATGTTGGAAACCAAGTGTATTCCAGATGAAATAACTATTAATTCTTTGATATCTTGCCTTCTGAAGGCTGGAATGCCTGATGAAGCCTCTCAAATCAAGCAAGCTGCTTTGGAATACCTGAACTTCGACTTGTTATCGTTGAAGAATCCACTTACAATAAAATCTTCATGTGTGCCAGTTGCTATTTGA

Protein sequence

MKSRELKQESVTQSEGPNRIPGCKRARIVIENIWEDRAEPSDGVGLQMTLLFFSSRACRFRASNFFIAQFYSIADGVSRARPFCDREVIRNPESWLVKVVCTLFFRSHSLNACFGYLSRNLNPSIAFEVIKRFRDPLLGLKFFEFSRTHLSINHTFNTYDLLVRNLCQMGLNDSAKTVFDCMRTDGILPDSSIVEILVSSYAQLGKLDAAKNFLDEIHCYGIKVIPFVYNNFLNMLVKQNQVDEAVLLFREHLEPYFTPDVYTFNILIRGLCRIGETDKAFEYLQNMENFGCFPDIVSYNTLINGFCRVNEVSKGHDLLKEVQSIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKAGEMRLALAMYDKMLLLGCLPDVVTVTSLIDGYCRAGEVNQGLKLWEEMKVRDLSPNVYTYAVLINALCKENRIQEARNFLRHLKLSEIVPKPFIYNPVIDGFCKAGKVDEANVIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAINIFYKMLETKCIPDEITINSLISCLLKAGMPDEASQIKQAALEYLNFDLLSLKNPLTIKSSCVPVAI
Homology
BLAST of CmaCh05G014250 vs. ExPASy Swiss-Prot
Match: Q9ZUE9 (Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana OX=3702 GN=At2g06000 PE=2 SV=1)

HSP 1 Score: 570.1 bits (1468), Expect = 3.0e-161
Identity = 280/506 (55.34%), Postives = 373/506 (73.72%), Query Frame = 0

Query: 67  IAQFYSIADGVSRARPFCD--REVIRNPESWLVKVVCTLF-FRSHSLNACFGYLSRNLNP 126
           IA F++ + G ++ARP  +  REVI  PE+WLVK+V TLF +R    + CF YLS+NLNP
Sbjct: 10  IAHFHTHSHGGAQARPLQNNTREVIHCPEAWLVKIVSTLFVYRVPDSDLCFCYLSKNLNP 69

Query: 127 SIAFEVIKRF-RDPLLGLKFFEFSRTHLSINHTFNTYDLLVRNLCQMGLNDSAKTVFDCM 186
            I+FEV+K+   +P +G +F+EFSR  L+I H+F TY+LL R+LC+ GL+D A  +F+CM
Sbjct: 70  FISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECM 129

Query: 187 RTDGILPDSSIVEILVSSYAQLGKLDAAKNFLDEIHCYGIKVIPFVYNNFLNMLVKQNQV 246
           ++DG+ P++ ++  LVSS+A+ GKL  A   L  +  + ++    V N+ LN LVK ++V
Sbjct: 130 KSDGVSPNNRLLGFLVSSFAEKGKLHFATALL--LQSFEVEGCCMVVNSLLNTLVKLDRV 189

Query: 247 DEAVLLFREHLEPYFTPDVYTFNILIRGLCRIGETDKAFEYLQNMENFGCFPDIVSYNTL 306
           ++A+ LF EHL      D  TFNILIRGLC +G+ +KA E L  M  FGC PDIV+YNTL
Sbjct: 190 EDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTL 249

Query: 307 INGFCRVNEVSKGHDLLKEVQSIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG 366
           I GFC+ NE++K  ++ K+V+S    SPDV+TYTS+ISGYCK G M+ AS L D+M+  G
Sbjct: 250 IQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG 309

Query: 367 IKPNDFTFNVLIDGFGKAGEMRLALAMYDKMLLLGCLPDVVTVTSLIDGYCRAGEVNQGL 426
           I P + TFNVL+DG+ KAGEM  A  +  KM+  GC PDVVT TSLIDGYCR G+V+QG 
Sbjct: 310 IYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGF 369

Query: 427 KLWEEMKVRDLSPNVYTYAVLINALCKENRIQEARNFLRHLKLSEIVPKPFIYNPVIDGF 486
           +LWEEM  R + PN +TY++LINALC ENR+ +AR  L  L   +I+P+PF+YNPVIDGF
Sbjct: 370 RLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGF 429

Query: 487 CKAGKVDEANVIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAINIFYKMLETKCIPDE 546
           CKAGKV+EANVIV EM++KKC+PDKITFTILIIG+CMKGRM EA++IF+KM+   C PD+
Sbjct: 430 CKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDK 489

Query: 547 ITINSLISCLLKAGMPDEASQIKQAA 569
           IT++SL+SCLLKAGM  EA  + Q A
Sbjct: 490 ITVSSLLSCLLKAGMAKEAYHLNQIA 513

BLAST of CmaCh05G014250 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.9e-68
Identity = 149/473 (31.50%), Postives = 250/473 (52.85%), Query Frame = 0

Query: 116 YLSRNLNPSIAFE-VIKRFRDPLLGLKFFEFSRTH--------------LSINHTFNTYD 175
           +LS N  P  A   ++K   D  L LKF  ++  H              L+    + T  
Sbjct: 41  HLSANFTPEAASNLLLKSQNDQALILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQ 100

Query: 176 LLVRNLCQMGLNDS-AKTVFDCMRT--DGILPDSSIVEILVSSYAQLGKLDAAKNFLDEI 235
           +L  ++    L+D  A  VF  ++   D     SS+ +++V SY++L  +D A + +   
Sbjct: 101 ILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLA 160

Query: 236 HCYGIKVIPFVYNNFLNMLVK-QNQVDEAVLLFREHLEPYFTPDVYTFNILIRGLCRIGE 295
             +G       YN  L+  ++ +  +  A  +F+E LE   +P+V+T+NILIRG C  G 
Sbjct: 161 QAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGN 220

Query: 296 TDKAFEYLQNMENFGCFPDIVSYNTLINGFCRVNEVSKGHDLLKEVQSIKGVSPDVITYT 355
            D A      ME  GC P++V+YNTLI+G+C++ ++  G  LL+ + ++KG+ P++I+Y 
Sbjct: 221 IDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM-ALKGLEPNLISYN 280

Query: 356 SIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKAGEMRLALAMYDKMLLL 415
            +I+G C+ G MK  S +  EM   G   ++ T+N LI G+ K G    AL M+ +ML  
Sbjct: 281 VVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 340

Query: 416 GCLPDVVTVTSLIDGYCRAGEVNQGLKLWEEMKVRDLSPNVYTYAVLINALCKENRIQEA 475
           G  P V+T TSLI   C+AG +N+ ++  ++M+VR L PN  TY  L++   ++  + EA
Sbjct: 341 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 400

Query: 476 RNFLRHLKLSEIVPKPFIYNPVIDGFCKAGKVDEANVIVAEMQEKKCRPDKITFTILIIG 535
              LR +  +   P    YN +I+G C  GK+++A  ++ +M+EK   PD ++++ ++ G
Sbjct: 401 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 460

Query: 536 NCMKGRMVEAINIFYKMLETKCIPDEITINSLISCLLKAGMPDEASQIKQAAL 570
            C    + EA+ +  +M+E    PD IT +SLI    +     EA  + +  L
Sbjct: 461 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML 512

BLAST of CmaCh05G014250 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.9e-63
Identity = 136/415 (32.77%), Postives = 224/415 (53.98%), Query Frame = 0

Query: 158 TYDLLVRNLCQMGLNDSAKTVFDCMRTDGILPDSSIVEILVSSYAQLGKLDAAKNFLDEI 217
           T+  +++   + G  D A  + + M   G    +  V ++V  + + G+++ A NF+ E+
Sbjct: 226 TFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285

Query: 218 -HCYGIKVIPFVYNNFLNMLVKQNQVDEAVLLFREHLEPYFTPDVYTFNILIRGLCRIGE 277
            +  G     + +N  +N L K   V  A+ +    L+  + PDVYT+N +I GLC++GE
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGE 345

Query: 278 TDKAFEYLQNMENFGCFPDIVSYNTLINGFCRVNEVSKGHDLLKEVQSIKGVSPDVITYT 337
             +A E L  M    C P+ V+YNTLI+  C+ N+V +  +L + + S KG+ PDV T+ 
Sbjct: 346 VKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTS-KGILPDVCTFN 405

Query: 338 SIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKAGEMRLALAMYDKMLLL 397
           S+I G C   + + A ELF+EM S G +P++FT+N+LID     G++  AL M  +M L 
Sbjct: 406 SLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 465

Query: 398 GCLPDVVTVTSLIDGYCRAGEVNQGLKLWEEMKVRDLSPNVYTYAVLINALCKENRIQEA 457
           GC   V+T  +LIDG+C+A +  +  ++++EM+V  +S N  TY  LI+ LCK  R+++A
Sbjct: 466 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 525

Query: 458 RNFLRHLKLSEIVPKPFIYNPVIDGFCKAGKVDEANVIVAEMQEKKCRPDKITFTILIIG 517
              +  + +    P  + YN ++  FC+ G + +A  IV  M    C PD +T+  LI G
Sbjct: 526 AQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 585

Query: 518 NCMKGRMVEAINIFYKMLETKCIP-DEITINSLISCLLKAGMPDEASQIKQAALE 571
            C  GR VE  +   + ++ K I       N +I  L +     EA  + +  LE
Sbjct: 586 LCKAGR-VEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLE 638

BLAST of CmaCh05G014250 vs. ExPASy Swiss-Prot
Match: Q9LSL9 (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX=3702 GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.9e-63
Identity = 140/404 (34.65%), Postives = 219/404 (54.21%), Query Frame = 0

Query: 158 TYDLLVRNLCQMGLNDSAKTVFDCMRTDGILPDSSIVEILVSSYAQLGKLDAAKNFLDEI 217
           TY+ +V   C++G  + A      +   G+ PD      L+  Y Q   LD+A    +E+
Sbjct: 220 TYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279

Query: 218 HCYGIKVIPFVYNNFLNMLVKQNQVDEAVLLFREHLEPYFTPDVYTFNILIRGLCRIGET 277
              G +     Y + ++ L    ++DEA+ LF +  +    P V T+ +LI+ LC     
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERK 339

Query: 278 DKAFEYLQNMENFGCFPDIVSYNTLINGFCRVNEVSKGHDLLKEVQSIKGVSPDVITYTS 337
            +A   ++ ME  G  P+I +Y  LI+  C   +  K  +LL ++   KG+ P+VITY +
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE-KGLMPNVITYNA 399

Query: 338 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKAGEMRLALAMYDKMLLLG 397
           +I+GYCK G ++ A ++ + M S  + PN  T+N LI G+ K+  +  A+ + +KML   
Sbjct: 400 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERK 459

Query: 398 CLPDVVTVTSLIDGYCRAGEVNQGLKLWEEMKVRDLSPNVYTYAVLINALCKENRIQEAR 457
            LPDVVT  SLIDG CR+G  +   +L   M  R L P+ +TY  +I++LCK  R++EA 
Sbjct: 460 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEAC 519

Query: 458 NFLRHLKLSEIVPKPFIYNPVIDGFCKAGKVDEANVIVAEMQEKKCRPDKITFTILIIGN 517
           +    L+   + P   +Y  +IDG+CKAGKVDEA++++ +M  K C P+ +TF  LI G 
Sbjct: 520 DLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGL 579

Query: 518 CMKGRMVEAINIFYKMLETKCIPDEITINSLISCLLKAGMPDEA 562
           C  G++ EA  +  KM++    P   T   LI  LLK G  D A
Sbjct: 580 CADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHA 621

BLAST of CmaCh05G014250 vs. ExPASy Swiss-Prot
Match: Q9LQ16 (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX=3702 GN=At1g62910 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.3e-60
Identity = 127/415 (30.60%), Postives = 209/415 (50.36%), Query Frame = 0

Query: 150 LSINHTFNTYDLLVRNLCQMGLNDSAKTVFDCMRTDGILPDSSIVEILVSSYAQLGKLDA 209
           L I+H   TY + +   C+      A  V   M   G  PD   +  L++ Y    ++  
Sbjct: 112 LGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISD 171

Query: 210 AKNFLDEIHCYGIKVIPFVYNNFLNMLVKQNQVDEAVLLFREHLEPYFTPDVYTFNILIR 269
           A   +D++   G K   F +   ++ L   N+  EAV L  + ++    PD+ T+  ++ 
Sbjct: 172 AVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVN 231

Query: 270 GLCRIGETDKAFEYLQNMENFGCFPDIVSYNTLINGFCRVNEVSKGHDLLKEVQSIKGVS 329
           GLC+ G+ D A   L+ ME      D+V YNT+I+G C+   +    +L  E+ + KG+ 
Sbjct: 232 GLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDN-KGIR 291

Query: 330 PDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKAGEMRLALAM 389
           PDV TY+S+IS  C  G    AS L  +M+   I PN  TF+ LID F K G++  A  +
Sbjct: 292 PDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 351

Query: 390 YDKMLLLGCLPDVVTVTSLIDGYCRAGEVNQGLKLWEEMKVRDLSPNVYTYAVLINALCK 449
           YD+M+     PD+ T +SLI+G+C    +++   ++E M  +D  PNV TY+ LI   CK
Sbjct: 352 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCK 411

Query: 450 ENRIQEARNFLRHLKLSEIVPKPFIYNPVIDGFCKAGKVDEANVIVAEMQEKKCRPDKIT 509
             R++E     R +    +V     Y  +I GF +A   D A ++  +M      P+ +T
Sbjct: 412 AKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 471

Query: 510 FTILIIGNCMKGRMVEAINIFYKMLETKCIPDEITINSLISCLLKAGMPDEASQI 565
           + IL+ G C  G++ +A+ +F  +  +   PD  T N +I  + KAG  ++  ++
Sbjct: 472 YNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWEL 525

BLAST of CmaCh05G014250 vs. TAIR 10
Match: AT2G06000.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 570.1 bits (1468), Expect = 2.1e-162
Identity = 280/506 (55.34%), Postives = 373/506 (73.72%), Query Frame = 0

Query: 67  IAQFYSIADGVSRARPFCD--REVIRNPESWLVKVVCTLF-FRSHSLNACFGYLSRNLNP 126
           IA F++ + G ++ARP  +  REVI  PE+WLVK+V TLF +R    + CF YLS+NLNP
Sbjct: 10  IAHFHTHSHGGAQARPLQNNTREVIHCPEAWLVKIVSTLFVYRVPDSDLCFCYLSKNLNP 69

Query: 127 SIAFEVIKRF-RDPLLGLKFFEFSRTHLSINHTFNTYDLLVRNLCQMGLNDSAKTVFDCM 186
            I+FEV+K+   +P +G +F+EFSR  L+I H+F TY+LL R+LC+ GL+D A  +F+CM
Sbjct: 70  FISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECM 129

Query: 187 RTDGILPDSSIVEILVSSYAQLGKLDAAKNFLDEIHCYGIKVIPFVYNNFLNMLVKQNQV 246
           ++DG+ P++ ++  LVSS+A+ GKL  A   L  +  + ++    V N+ LN LVK ++V
Sbjct: 130 KSDGVSPNNRLLGFLVSSFAEKGKLHFATALL--LQSFEVEGCCMVVNSLLNTLVKLDRV 189

Query: 247 DEAVLLFREHLEPYFTPDVYTFNILIRGLCRIGETDKAFEYLQNMENFGCFPDIVSYNTL 306
           ++A+ LF EHL      D  TFNILIRGLC +G+ +KA E L  M  FGC PDIV+YNTL
Sbjct: 190 EDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTL 249

Query: 307 INGFCRVNEVSKGHDLLKEVQSIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG 366
           I GFC+ NE++K  ++ K+V+S    SPDV+TYTS+ISGYCK G M+ AS L D+M+  G
Sbjct: 250 IQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG 309

Query: 367 IKPNDFTFNVLIDGFGKAGEMRLALAMYDKMLLLGCLPDVVTVTSLIDGYCRAGEVNQGL 426
           I P + TFNVL+DG+ KAGEM  A  +  KM+  GC PDVVT TSLIDGYCR G+V+QG 
Sbjct: 310 IYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGF 369

Query: 427 KLWEEMKVRDLSPNVYTYAVLINALCKENRIQEARNFLRHLKLSEIVPKPFIYNPVIDGF 486
           +LWEEM  R + PN +TY++LINALC ENR+ +AR  L  L   +I+P+PF+YNPVIDGF
Sbjct: 370 RLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGF 429

Query: 487 CKAGKVDEANVIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAINIFYKMLETKCIPDE 546
           CKAGKV+EANVIV EM++KKC+PDKITFTILIIG+CMKGRM EA++IF+KM+   C PD+
Sbjct: 430 CKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDK 489

Query: 547 ITINSLISCLLKAGMPDEASQIKQAA 569
           IT++SL+SCLLKAGM  EA  + Q A
Sbjct: 490 ITVSSLLSCLLKAGMAKEAYHLNQIA 513

BLAST of CmaCh05G014250 vs. TAIR 10
Match: AT2G06000.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 570.1 bits (1468), Expect = 2.1e-162
Identity = 280/506 (55.34%), Postives = 373/506 (73.72%), Query Frame = 0

Query: 67  IAQFYSIADGVSRARPFCD--REVIRNPESWLVKVVCTLF-FRSHSLNACFGYLSRNLNP 126
           IA F++ + G ++ARP  +  REVI  PE+WLVK+V TLF +R    + CF YLS+NLNP
Sbjct: 10  IAHFHTHSHGGAQARPLQNNTREVIHCPEAWLVKIVSTLFVYRVPDSDLCFCYLSKNLNP 69

Query: 127 SIAFEVIKRF-RDPLLGLKFFEFSRTHLSINHTFNTYDLLVRNLCQMGLNDSAKTVFDCM 186
            I+FEV+K+   +P +G +F+EFSR  L+I H+F TY+LL R+LC+ GL+D A  +F+CM
Sbjct: 70  FISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGLHDLAGQMFECM 129

Query: 187 RTDGILPDSSIVEILVSSYAQLGKLDAAKNFLDEIHCYGIKVIPFVYNNFLNMLVKQNQV 246
           ++DG+ P++ ++  LVSS+A+ GKL  A   L  +  + ++    V N+ LN LVK ++V
Sbjct: 130 KSDGVSPNNRLLGFLVSSFAEKGKLHFATALL--LQSFEVEGCCMVVNSLLNTLVKLDRV 189

Query: 247 DEAVLLFREHLEPYFTPDVYTFNILIRGLCRIGETDKAFEYLQNMENFGCFPDIVSYNTL 306
           ++A+ LF EHL      D  TFNILIRGLC +G+ +KA E L  M  FGC PDIV+YNTL
Sbjct: 190 EDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTL 249

Query: 307 INGFCRVNEVSKGHDLLKEVQSIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSG 366
           I GFC+ NE++K  ++ K+V+S    SPDV+TYTS+ISGYCK G M+ AS L D+M+  G
Sbjct: 250 IQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG 309

Query: 367 IKPNDFTFNVLIDGFGKAGEMRLALAMYDKMLLLGCLPDVVTVTSLIDGYCRAGEVNQGL 426
           I P + TFNVL+DG+ KAGEM  A  +  KM+  GC PDVVT TSLIDGYCR G+V+QG 
Sbjct: 310 IYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGF 369

Query: 427 KLWEEMKVRDLSPNVYTYAVLINALCKENRIQEARNFLRHLKLSEIVPKPFIYNPVIDGF 486
           +LWEEM  R + PN +TY++LINALC ENR+ +AR  L  L   +I+P+PF+YNPVIDGF
Sbjct: 370 RLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGF 429

Query: 487 CKAGKVDEANVIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAINIFYKMLETKCIPDE 546
           CKAGKV+EANVIV EM++KKC+PDKITFTILIIG+CMKGRM EA++IF+KM+   C PD+
Sbjct: 430 CKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDK 489

Query: 547 ITINSLISCLLKAGMPDEASQIKQAA 569
           IT++SL+SCLLKAGM  EA  + Q A
Sbjct: 490 ITVSSLLSCLLKAGMAKEAYHLNQIA 513

BLAST of CmaCh05G014250 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 261.2 bits (666), Expect = 2.1e-69
Identity = 149/473 (31.50%), Postives = 250/473 (52.85%), Query Frame = 0

Query: 116 YLSRNLNPSIAFE-VIKRFRDPLLGLKFFEFSRTH--------------LSINHTFNTYD 175
           +LS N  P  A   ++K   D  L LKF  ++  H              L+    + T  
Sbjct: 41  HLSANFTPEAASNLLLKSQNDQALILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQ 100

Query: 176 LLVRNLCQMGLNDS-AKTVFDCMRT--DGILPDSSIVEILVSSYAQLGKLDAAKNFLDEI 235
           +L  ++    L+D  A  VF  ++   D     SS+ +++V SY++L  +D A + +   
Sbjct: 101 ILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLA 160

Query: 236 HCYGIKVIPFVYNNFLNMLVK-QNQVDEAVLLFREHLEPYFTPDVYTFNILIRGLCRIGE 295
             +G       YN  L+  ++ +  +  A  +F+E LE   +P+V+T+NILIRG C  G 
Sbjct: 161 QAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGN 220

Query: 296 TDKAFEYLQNMENFGCFPDIVSYNTLINGFCRVNEVSKGHDLLKEVQSIKGVSPDVITYT 355
            D A      ME  GC P++V+YNTLI+G+C++ ++  G  LL+ + ++KG+ P++I+Y 
Sbjct: 221 IDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM-ALKGLEPNLISYN 280

Query: 356 SIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKAGEMRLALAMYDKMLLL 415
            +I+G C+ G MK  S +  EM   G   ++ T+N LI G+ K G    AL M+ +ML  
Sbjct: 281 VVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 340

Query: 416 GCLPDVVTVTSLIDGYCRAGEVNQGLKLWEEMKVRDLSPNVYTYAVLINALCKENRIQEA 475
           G  P V+T TSLI   C+AG +N+ ++  ++M+VR L PN  TY  L++   ++  + EA
Sbjct: 341 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 400

Query: 476 RNFLRHLKLSEIVPKPFIYNPVIDGFCKAGKVDEANVIVAEMQEKKCRPDKITFTILIIG 535
              LR +  +   P    YN +I+G C  GK+++A  ++ +M+EK   PD ++++ ++ G
Sbjct: 401 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 460

Query: 536 NCMKGRMVEAINIFYKMLETKCIPDEITINSLISCLLKAGMPDEASQIKQAAL 570
            C    + EA+ +  +M+E    PD IT +SLI    +     EA  + +  L
Sbjct: 461 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML 512

BLAST of CmaCh05G014250 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 243.8 bits (621), Expect = 3.5e-64
Identity = 136/415 (32.77%), Postives = 224/415 (53.98%), Query Frame = 0

Query: 158 TYDLLVRNLCQMGLNDSAKTVFDCMRTDGILPDSSIVEILVSSYAQLGKLDAAKNFLDEI 217
           T+  +++   + G  D A  + + M   G    +  V ++V  + + G+++ A NF+ E+
Sbjct: 226 TFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285

Query: 218 -HCYGIKVIPFVYNNFLNMLVKQNQVDEAVLLFREHLEPYFTPDVYTFNILIRGLCRIGE 277
            +  G     + +N  +N L K   V  A+ +    L+  + PDVYT+N +I GLC++GE
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGE 345

Query: 278 TDKAFEYLQNMENFGCFPDIVSYNTLINGFCRVNEVSKGHDLLKEVQSIKGVSPDVITYT 337
             +A E L  M    C P+ V+YNTLI+  C+ N+V +  +L + + S KG+ PDV T+ 
Sbjct: 346 VKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTS-KGILPDVCTFN 405

Query: 338 SIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKAGEMRLALAMYDKMLLL 397
           S+I G C   + + A ELF+EM S G +P++FT+N+LID     G++  AL M  +M L 
Sbjct: 406 SLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 465

Query: 398 GCLPDVVTVTSLIDGYCRAGEVNQGLKLWEEMKVRDLSPNVYTYAVLINALCKENRIQEA 457
           GC   V+T  +LIDG+C+A +  +  ++++EM+V  +S N  TY  LI+ LCK  R+++A
Sbjct: 466 GCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDA 525

Query: 458 RNFLRHLKLSEIVPKPFIYNPVIDGFCKAGKVDEANVIVAEMQEKKCRPDKITFTILIIG 517
              +  + +    P  + YN ++  FC+ G + +A  IV  M    C PD +T+  LI G
Sbjct: 526 AQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 585

Query: 518 NCMKGRMVEAINIFYKMLETKCIP-DEITINSLISCLLKAGMPDEASQIKQAALE 571
            C  GR VE  +   + ++ K I       N +I  L +     EA  + +  LE
Sbjct: 586 LCKAGR-VEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLE 638

BLAST of CmaCh05G014250 vs. TAIR 10
Match: AT5G65560.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 243.8 bits (621), Expect = 3.5e-64
Identity = 140/404 (34.65%), Postives = 219/404 (54.21%), Query Frame = 0

Query: 158 TYDLLVRNLCQMGLNDSAKTVFDCMRTDGILPDSSIVEILVSSYAQLGKLDAAKNFLDEI 217
           TY+ +V   C++G  + A      +   G+ PD      L+  Y Q   LD+A    +E+
Sbjct: 220 TYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279

Query: 218 HCYGIKVIPFVYNNFLNMLVKQNQVDEAVLLFREHLEPYFTPDVYTFNILIRGLCRIGET 277
              G +     Y + ++ L    ++DEA+ LF +  +    P V T+ +LI+ LC     
Sbjct: 280 PLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERK 339

Query: 278 DKAFEYLQNMENFGCFPDIVSYNTLINGFCRVNEVSKGHDLLKEVQSIKGVSPDVITYTS 337
            +A   ++ ME  G  P+I +Y  LI+  C   +  K  +LL ++   KG+ P+VITY +
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE-KGLMPNVITYNA 399

Query: 338 IISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKAGEMRLALAMYDKMLLLG 397
           +I+GYCK G ++ A ++ + M S  + PN  T+N LI G+ K+  +  A+ + +KML   
Sbjct: 400 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERK 459

Query: 398 CLPDVVTVTSLIDGYCRAGEVNQGLKLWEEMKVRDLSPNVYTYAVLINALCKENRIQEAR 457
            LPDVVT  SLIDG CR+G  +   +L   M  R L P+ +TY  +I++LCK  R++EA 
Sbjct: 460 VLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEAC 519

Query: 458 NFLRHLKLSEIVPKPFIYNPVIDGFCKAGKVDEANVIVAEMQEKKCRPDKITFTILIIGN 517
           +    L+   + P   +Y  +IDG+CKAGKVDEA++++ +M  K C P+ +TF  LI G 
Sbjct: 520 DLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGL 579

Query: 518 CMKGRMVEAINIFYKMLETKCIPDEITINSLISCLLKAGMPDEA 562
           C  G++ EA  +  KM++    P   T   LI  LLK G  D A
Sbjct: 580 CADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHA 621

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZUE93.0e-16155.34Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana OX... [more]
Q9FIX32.9e-6831.50Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX... [more]
Q9LFF14.9e-6332.77Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
Q9LSL94.9e-6334.65Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX... [more]
Q9LQ162.3e-6030.60Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
AT2G06000.12.1e-16255.34Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G06000.22.1e-16255.34Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G39710.12.1e-6931.50Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G53700.13.5e-6432.77Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G65560.13.5e-6434.65Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 333..366
e-value: 6.0E-12
score: 43.0
coord: 368..402
e-value: 3.3E-9
score: 34.4
coord: 474..506
e-value: 2.2E-9
score: 34.9
coord: 262..296
e-value: 3.7E-10
score: 37.3
coord: 543..564
e-value: 0.0031
score: 15.6
coord: 403..437
e-value: 3.1E-9
score: 34.5
coord: 297..331
e-value: 2.7E-6
score: 25.2
coord: 438..470
e-value: 5.4E-5
score: 21.1
coord: 508..542
e-value: 5.5E-5
score: 21.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 330..378
e-value: 5.1E-19
score: 68.2
coord: 473..518
e-value: 1.2E-13
score: 51.0
coord: 259..308
e-value: 4.4E-15
score: 55.6
coord: 400..449
e-value: 2.4E-18
score: 66.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 158..187
e-value: 0.026
score: 14.8
coord: 228..251
e-value: 0.11
score: 12.8
coord: 544..563
e-value: 0.039
score: 14.2
coord: 196..222
e-value: 0.25
score: 11.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 155..189
score: 9.777537
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 471..505
score: 12.101333
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 366..400
score: 11.761533
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 331..365
score: 14.699161
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 401..435
score: 12.67132
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 260..294
score: 12.978237
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 506..540
score: 9.97484
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 295..330
score: 9.96388
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 436..470
score: 11.038087
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 222..353
e-value: 1.5E-34
score: 121.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 431..498
e-value: 8.1E-19
score: 69.9
coord: 139..221
e-value: 2.8E-9
score: 38.8
coord: 499..571
e-value: 1.6E-16
score: 62.4
coord: 359..430
e-value: 3.2E-21
score: 77.7
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 61..587
NoneNo IPR availablePANTHERPTHR47941:SF1OSJNBA0027P08.18 PROTEINcoord: 61..587
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 202..394

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G014250.1CmaCh05G014250.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding