CmaCh05G014160 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G014160
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein ELF4-LIKE 3-like
Location	Cma_Chr05: 10527026 .. 10527361 (-)
RNA-Seq Expression	CmaCh05G014160
Synteny	CmaCh05G014160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGGGAGACATTGTCATCAGGAGGAATGGGGAATGGAAGGCAGATGGATGGGAAAATGGCTCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAACATTTTGGATCAAAACAGATTGCTGATCAATGAAATTAACCAAAATCACGAGTCCAAAATGCCCGACAACCTCGCCAGAAACGTGGGCTTGATTCGCGAGCTTAACAACAACATCAGAAGGGTTGTTGATTTGTACGCCCATCTCTCCGCTTCCTTCACCAAATCTATGGAGGCTTCCTCCGAAGGAAACTCCGCCGCCAAGCCTGGCCACAAGCGCAACCGCCCTCCGCCGTAG

mRNA sequence

ATGGAGGGGGAGACATTGTCATCAGGAGGAATGGGGAATGGAAGGCAGATGGATGGGAAAATGGCTCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAACATTTTGGATCAAAACAGATTGCTGATCAATGAAATTAACCAAAATCACGAGTCCAAAATGCCCGACAACCTCGCCAGAAACGTGGGCTTGATTCGCGAGCTTAACAACAACATCAGAAGGGTTGTTGATTTGTACGCCCATCTCTCCGCTTCCTTCACCAAATCTATGGAGGCTTCCTCCGAAGGAAACTCCGCCGCCAAGCCTGGCCACAAGCGCAACCGCCCTCCGCCGTAG

Coding sequence (CDS)

ATGGAGGGGGAGACATTGTCATCAGGAGGAATGGGGAATGGAAGGCAGATGGATGGGAAAATGGCTCAGACATTTCAGAAGAATTTCGTTCAAGTTCAGAACATTTTGGATCAAAACAGATTGCTGATCAATGAAATTAACCAAAATCACGAGTCCAAAATGCCCGACAACCTCGCCAGAAACGTGGGCTTGATTCGCGAGCTTAACAACAACATCAGAAGGGTTGTTGATTTGTACGCCCATCTCTCCGCTTCCTTCACCAAATCTATGGAGGCTTCCTCCGAAGGAAACTCCGCCGCCAAGCCTGGCCACAAGCGCAACCGCCCTCCGCCGTAG

Protein sequence

MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRPPP

Homology

[Close]

BLAST of CmaCh05G014160 vs. ExPASy Swiss-Prot
Match: Q8S8F5 (Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-34
Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60
           MEG+T+S   MG+G QMDGK+ QTF+K+FVQVQNILD NRLLINEINQNHESK+PDNL R
Sbjct: 1   MEGDTISR-MMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRP 110
           NVGLIRELNNN+RRV  LY  LS +F+KSMEASSEG+S+   G++R RP
Sbjct: 61  NVGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEGRGNRRIRP 108

[Close]

BLAST of CmaCh05G014160 vs. ExPASy Swiss-Prot
Match: Q570U6 (Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-30
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60
           MEG+ LS  G G+   MDGK+ Q+FQK+FV VQ+ILDQNRLLINEINQNHESK PDNL R
Sbjct: 1   MEGDVLS--GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA 100
           NVGLI+ELNNNIRRV  LY  LS SF +S++ASSEG S+
Sbjct: 61  NVGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESS 97

[Close]

BLAST of CmaCh05G014160 vs. ExPASy Swiss-Prot
Match: Q94BS8 (Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-28
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60
           MEG+  S  G G   QMDGK+ Q FQK+FVQVQ+ILDQNRLLINEINQNHESK  D+L R
Sbjct: 5   MEGDVYS--GFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGR 64

Query: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNS 99
           NVGLIRELNNNIR V  LY  LS SF +S++ASSEG S
Sbjct: 65  NVGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGES 100

[Close]

BLAST of CmaCh05G014160 vs. ExPASy Swiss-Prot
Match: O04211 (Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-14
Identity = 36/80 (45.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 18  DGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVD 77
           D  M +   +NF QVQ++LD+NR LI ++N NH+S+M DN+++NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 78  LYAHLSASFTKSMEASSEGN 98
           +Y+ L+ SF+        G+
Sbjct: 82  MYSDLNTSFSSGFHGGKNGH 101

[Close]

BLAST of CmaCh05G014160 vs. ExPASy Swiss-Prot
Match: O80877 (Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-12
Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 0


Query: 18  DGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVD 77
           D ++  T    F + Q  LDQNR LI  +N+NH S++PDN++RNVGLI E+N NI +V++
Sbjct: 34  DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93

Query: 78  LYAHLSASFTKSME 92
           +Y+ LS +F K  +
Sbjct: 94  IYSDLSLNFAKKFD 107

[Close]

BLAST of CmaCh05G014160 vs. TAIR 10
Match: AT2G06255.1 (ELF4-like 3 )

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35
Identity = 79/109 (72.48%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60
           MEG+T+S   MG+G QMDGK+ QTF+K+FVQVQNILD NRLLINEINQNHESK+PDNL R
Sbjct: 1   MEGDTISR-MMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSAAKPGHKRNRP 110
           NVGLIRELNNN+RRV  LY  LS +F+KSMEASSEG+S+   G++R RP
Sbjct: 61  NVGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDSSEGRGNRRIRP 108

[Close]

BLAST of CmaCh05G014160 vs. TAIR 10
Match: AT1G17455.1 (ELF4-like 4 )

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-31
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60
           MEG+ LS  G G+   MDGK+ Q+FQK+FV VQ+ILDQNRLLINEINQNHESK PDNL R
Sbjct: 1   MEGDVLS--GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA 100
           NVGLI+ELNNNIRRV  LY  LS SF +S++ASSEG S+
Sbjct: 61  NVGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESS 97

[Close]

BLAST of CmaCh05G014160 vs. TAIR 10
Match: AT1G17455.2 (ELF4-like 4 )

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-31
Identity = 70/99 (70.71%), Postives = 81/99 (81.82%), Query Frame = 0


Query: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60
           MEG+ LS  G G+   MDGK+ Q+FQK+FV VQ+ILDQNRLLINEINQNHESK PDNL R
Sbjct: 1   MEGDVLS--GFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGR 60

Query: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNSA 100
           NVGLI+ELNNNIRRV  LY  LS SF +S++ASSEG S+
Sbjct: 61  NVGLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESS 97

[Close]

BLAST of CmaCh05G014160 vs. TAIR 10
Match: AT1G72630.1 (ELF4-like 2 )

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-29
Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 0


Query: 1   MEGETLSSGGMGNGRQMDGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLAR 60
           MEG+  S  G G   QMDGK+ Q FQK+FVQVQ+ILDQNRLLINEINQNHESK  D+L R
Sbjct: 5   MEGDVYS--GFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGR 64

Query: 61  NVGLIRELNNNIRRVVDLYAHLSASFTKSMEASSEGNS 99
           NVGLIRELNNNIR V  LY  LS SF +S++ASSEG S
Sbjct: 65  NVGLIRELNNNIRTVASLYGDLSHSFARSVDASSEGES 100

[Close]

BLAST of CmaCh05G014160 vs. TAIR 10
Match: AT2G40080.1 (Protein of unknown function (DUF1313) )

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-15
Identity = 36/80 (45.00%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 18  DGKMAQTFQKNFVQVQNILDQNRLLINEINQNHESKMPDNLARNVGLIRELNNNIRRVVD 77
           D  M +   +NF QVQ++LD+NR LI ++N NH+S+M DN+++NV LI+ELN NI +VV+
Sbjct: 22  DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query: 78  LYAHLSASFTKSMEASSEGN 98
           +Y+ L+ SF+        G+
Sbjct: 82  MYSDLNTSFSSGFHGGKNGH 101

The following BLAST results are available for this feature:

BLAST of CmaCh05G014160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8F5	1.5e-34	72.48	Protein ELF4-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=EFL3 PE=3 SV=1	[more]
Q570U6	2.9e-30	70.71	Protein ELF4-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=EFL4 PE=2 SV=1	[more]
Q94BS8	2.1e-28	70.41	Protein ELF4-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=EFL2 PE=2 SV=1	[more]
O04211	3.9e-14	45.00	Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana OX=3702 GN=ELF4 PE=1 SV=1	[more]
O80877	6.2e-12	45.95	Protein ELF4-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=EFL1 PE=2 SV=1	[more]

BLAST of CmaCh05G014160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06255.1	1.1e-35	72.48	ELF4-like 3	[more]
AT1G17455.1	2.1e-31	70.71	ELF4-like 4	[more]
AT1G17455.2	2.1e-31	70.71	ELF4-like 4	[more]
AT1G72630.1	1.5e-29	70.41	ELF4-like 2	[more]
AT2G40080.1	2.7e-15	45.00	Protein of unknown function (DUF1313)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009741	Protein EARLY FLOWERING 4 domain	PFAM	PF07011	Elf4	coord: 16..97 e-value: 1.0E-39 score: 134.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..111
None	No IPR available	PANTHER	PTHR33469:SF17	PROTEIN ELF4-LIKE 3-LIKE	coord: 1..109
IPR040462	Protein EARLY FLOWERING 4	PANTHER	PTHR33469	PROTEIN ELF4-LIKE 4	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G014160.1	CmaCh05G014160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009649	entrainment of circadian clock
biological_process	GO:0042753	positive regulation of circadian rhythm
cellular_component	GO:0005634	nucleus