CmaCh05G014090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G014090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Replication protein A subunit
Location	Cma_Chr05: 10498054 .. 10502215 (+)
RNA-Seq Expression	CmaCh05G014090
Synteny	CmaCh05G014090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCGACCGAGGACGGCAGATTATCGTCTTCATTTGTTGGACGTTGGTGTCAGACTCTGAATTTTCTTTGTAATTAAGCTCCATTTCCGTTTGCTTTGCTTCACCAAGGCCTTTTCATTCTCCCCGTTCCTTGCTTGAACTTCAATTCCACTCGCATTGCTTCTCAATCTTACTTTCTCTTCCATTTTCCTAGGGTTTTCGTCAGTTTCTTTGTAATCATTTACTTTCTTTTCACGATTCATTCCCGAGCTCTCTCGCGGTCGCATCTGTATCATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTGATCGGTAATACGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTACCGAGCAGGCTATGCTCGCAACTCAGCTCAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCAGTTATCCAGTTGATCGATTATGTTTGCAGTCCCATTAAGAGCCGCAAGTCCGTTCTCTCCCTCGTACTTCATTAATTATTTTTTTTTCATCGTGATGGATTATTATAATTATATTTTGAAAAAATCTAGCCGTATGTGGTGTCATTATTCATTTTAATTGGCTTACTGGCCTTCTCGGACAACGTGATGCAAGTTTAGAAAACTAGGTGCGCATTTGAAGTTTTGAGATAAATCATTTAGTGATGCATAGTTGAATCGGAGAAATGGTTATTTTGCTCTGCGTTGAAATCTCTTGTAGAAAACAGTTTGTATGCTTGTTTGAAATGATTGGTGTAAGTATGAATTACCGTCTAAAGTTGATACTAGTGTATTAATTTTAATCATGCATTAATTGTTCATTTAAATTATTAAGTGGCTTGGTGCCGATCGACTGCTGCTCTCTTCTGATCTTGTTAAAATCTGTGTACATGAACACATCGTGGGAGAAAATTTTCTATTGTCTGTTTATATGCTTGTTTGAAATGTTCAATGCATGCATGAATTACTGTCCAAGGTTGATAGAGTTTATTAAATTTTAATCATAATCAATTTTCCATTTCAACTGTTAGGTCTGTACACAATGGTTTAGCGTTGAAAGATTGTTCTCTCTTTTTGTTCCTGTTAAAATCTGTGTATATGAACACATCATGGTATAAAATATTCTTTCATCAGTTTACATACCTGTTTGAAGTTAGGTGGATGTTAGAATACTGTCTAAAATTGATACAGTTGTTAAATTTTTATTGTTTTATTACTTGTCCATTTGAATTGTTAGGTTTGTACAGAAGTTTTTTTTTGGTGCCATTAGGTTGCTTTTTGCTCCTTTTGTTCCTGTTAAAATCTGTTTATATGAACACATCATGGGAAAAGAATGTTTTATTGTCAGTTTATATTTGAGATAATGAAACGTTCGGTGCATGCATGATTTACTCTTTATGATTGATACGGTTTACTAAATATTAATCTTAATCGTTGATTGATTGTCCATTTGAATTATTAGGTCTTACATAACTTTTTTCAGGTCTGTACACAAGTGGTTTAGTATCGATAGATTTTCATTATTTGCTTGTATTCTTATTAAAATCTGTGTATACGAACAAATCATGAGGAAAAAAGGATCCTGTTGTTAGTTTACATGCTTGTCTGAATGTTTTGTGCATACATGAATTACTTTCTATGGTCGATATGGTTCATTAAACTTAAATCATGGATTGAATGTCCATTTGAGTTATTATATTTTTACACAAGTGGTTTAATGCGATAGATTGCCGTTTCTCCTTTTGTCTCATTAAAATCTGTGTACATGAACACATCGTGGGAAAAATGTCTTATTGTCGGTTTATCTGCTTGTTTTGAAATGCTAGGTGCATGCATGAATTACTGTCCAAGGTTATTGACTTTTTATGACCGACTAACTGTCCATTTGAATTGTTTGGTTTGGGTCTCGTTCCAGTCTCTCATATTCTTGTTATAAGCTGAGTATGTGTACACGTCATGACATGAGAAAGAAGGAACTATTGTTAGCTCAGCTGTTCAAATAATGTTGCTTTGTGGGTATGTCTTCGTGATCATGTTAATTATGGTATCTTACTTCCCATTCTATGCAGACCGTAGCTTTGTAAACTAGATGACTTGTAAATTCTTCACAGTAGGATGGATGTTATAATTGAGCAGGGAAGGTTTTTCCCTTTTGAGTTAAATCTACTTCCGACTTGAATTGCTGTAACTAGAGCCAATACTGATTTCTCTACTACCTTTCTATGCAGGGTTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACAGTGAGATAATTGGGAATCCAAAATCATCTGCCCAATCAGAGAATGTTGCACAAAAGGCAATGCCGTCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATCGTCTTGTGAGTGCCAGAAATCCAGTTAATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCGTATCAGCCACCTCCAAATTATAAAAATCATGGTGCAATCATTAAGAATGAGGCACCAGCCCGTGTAATTCCCATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCTAAAGGTGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAATGCTGTTGTTGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTTTACTTGATTTCTAAAGGTAGCCTAAAACCTGCGCGGAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACATTGTCCAGATGAAGATGATACCATACCAAGACAGCAGTTTTCTTTTAGACCTATCAGTGAAATTGAAAATGCTGAAACCAACTCTATTCTGGATGTTATTGGTATTGTAACATCTATCAATCCATCAATTCCTGTTTTGAGGAAAAATGGTATGGAAACTCAAAGAAGGGTTCTGAATTTGAAGGATGCGTCTGGCAGGAGTGTCGAGCTGACACTGTGGGGAGATTTTTGCAACAAAGAAGGTCAAAATCTGCAAGAAATGATCAACTCAGGCCTCTCTCCAGTTTTGGCTGTGAAGTCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACACAGCTTTTCGTAAATCCAGATCTTTCTGAGGCTCTCATCTTGAGAGACTGGTACGATGGTGGAGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGTCAGGATCTGCCAAGAATGAGATTCGAAAGTCTGTATCTCAGATAAAAGATGAAGGACTTGGCAGATCTGATAAGCCAGATTGGATAACCGTGAAAGCAACAATATCGTTTATTAAAACAGATTCCTTCTGCTACACAGCATGTCCATTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCGAAGTGGCTGTGTGACCGGTGCAATCAAGTATTTGAGGATTGCGATTACAGGTATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACCGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAGTTGTACATGTTGAAGTATGAACAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAGGTAAAATTTTCGATCAATTTCTGTTTAGACTCAAAATCAAGGAGGAGATGTACGGGGATGAACAGAGAGTGAAAAATACTGTAGTTAAGGCAGATAAGGTAAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCAAAGAGGTAACAAATTATTTCTTGCCGACTAGGCGATATAATTCTGTCCAGAATTACTCTACTCTTGGAGGACGAACATTTATTCTTTTTTTTCAGACATTCGTAGAATAAAATGTATTCAGGGAAAGAGAAAGTGATGGTTTGAGCAAATAGGTACTTTACATTCAATATATATCACAGTTTCTGGTGATTTACGGCAGGAGCCGCATATTACACACAAAACACAGAACCAACCACTACAGACAATGGAACATCATGGGACGACGGCATTATGA

mRNA sequence

TTTCGACCGAGGACGGCAGATTATCGTCTTCATTTGTTGGACGTTGGTGTCAGACTCTGAATTTTCTTTGTAATTAAGCTCCATTTCCGTTTGCTTTGCTTCACCAAGGCCTTTTCATTCTCCCCGTTCCTTGCTTGAACTTCAATTCCACTCGCATTGCTTCTCAATCTTACTTTCTCTTCCATTTTCCTAGGGTTTTCGTCAGTTTCTTTGTAATCATTTACTTTCTTTTCACGATTCATTCCCGAGCTCTCTCGCGGTCGCATCTGTATCATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTGATCGGTAATACGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTACCGAGCAGGCTATGCTCGCAACTCAGCTCAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCAGTTATCCAGTTGATCGATTATGTTTGCAGTCCCATTAAGAGCCGCAAGGTTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACAGTGAGATAATTGGGAATCCAAAATCATCTGCCCAATCAGAGAATGTTGCACAAAAGGCAATGCCGTCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATCGTCTTGTGAGTGCCAGAAATCCAGTTAATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCGTATCAGCCACCTCCAAATTATAAAAATCATGGTGCAATCATTAAGAATGAGGCACCAGCCCGTGTAATTCCCATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCTAAAGGTGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAATGCTGTTGTTGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTTTACTTGATTTCTAAAGGTAGCCTAAAACCTGCGCGGAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACATTGTCCAGATGAAGATGATACCATACCAAGACAGCAGTTTTCTTTTAGACCTATCAGTGAAATTGAAAATGCTGAAACCAACTCTATTCTGGATGTTATTGGTATTGTAACATCTATCAATCCATCAATTCCTGTTTTGAGGAAAAATGGTATGGAAACTCAAAGAAGGGTTCTGAATTTGAAGGATGCGTCTGGCAGGAGTGTCGAGCTGACACTGTGGGGAGATTTTTGCAACAAAGAAGGTCAAAATCTGCAAGAAATGATCAACTCAGGCCTCTCTCCAGTTTTGGCTGTGAAGTCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACACAGCTTTTCGTAAATCCAGATCTTTCTGAGGCTCTCATCTTGAGAGACTGGTACGATGGTGGAGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGTCAGGATCTGCCAAGAATGAGATTCGAAAGTCTGTATCTCAGATAAAAGATGAAGGACTTGGCAGATCTGATAAGCCAGATTGGATAACCGTGAAAGCAACAATATCGTTTATTAAAACAGATTCCTTCTGCTACACAGCATGTCCATTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCGAAGTGGCTGTGTGACCGGTGCAATCAAGTATTTGAGGATTGCGATTACAGGTATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACCGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAGTTGTACATGTTGAAGTATGAACAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAGGTAAAATTTTCGATCAATTTCTGTTTAGACTCAAAATCAAGGAGGAGATGTACGGGGATGAACAGAGAGTGAAAAATACTGTAGTTAAGGCAGATAAGGAGCCGCATATTACACACAAAACACAGAACCAACCACTACAGACAATGGAACATCATGGGACGACGGCATTATGA

Coding sequence (CDS)

ATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTGGTGCAGGTCCTAGATATCAAGCTGATCGGTAATACGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTACCGAGCAGGCTATGCTCGCAACTCAGCTCAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCAGTTATCCAGTTGATCGATTATGTTTGCAGTCCCATTAAGAGCCGCAAGGTTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACAGTGAGATAATTGGGAATCCAAAATCATCTGCCCAATCAGAGAATGTTGCACAAAAGGCAATGCCGTCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATCGTCTTGTGAGTGCCAGAAATCCAGTTAATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCGTATCAGCCACCTCCAAATTATAAAAATCATGGTGCAATCATTAAGAATGAGGCACCAGCCCGTGTAATTCCCATAGCTGCATTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCTAAAGGTGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAATGCTGTTGTTGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTTTACTTGATTTCTAAAGGTAGCCTAAAACCTGCGCGGAAGGATTTCAATCACCTAAAGAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACATTGTCCAGATGAAGATGATACCATACCAAGACAGCAGTTTTCTTTTAGACCTATCAGTGAAATTGAAAATGCTGAAACCAACTCTATTCTGGATGTTATTGGTATTGTAACATCTATCAATCCATCAATTCCTGTTTTGAGGAAAAATGGTATGGAAACTCAAAGAAGGGTTCTGAATTTGAAGGATGCGTCTGGCAGGAGTGTCGAGCTGACACTGTGGGGAGATTTTTGCAACAAAGAAGGTCAAAATCTGCAAGAAATGATCAACTCAGGCCTCTCTCCAGTTTTGGCTGTGAAGTCTGGGAAGGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACACAGCTTTTCGTAAATCCAGATCTTTCTGAGGCTCTCATCTTGAGAGACTGGTACGATGGTGGAGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGTCAGGATCTGCCAAGAATGAGATTCGAAAGTCTGTATCTCAGATAAAAGATGAAGGACTTGGCAGATCTGATAAGCCAGATTGGATAACCGTGAAAGCAACAATATCGTTTATTAAAACAGATTCCTTCTGCTACACAGCATGTCCATTAATGATTGGAGATCGACAATGCAACAAGAAGGTGACTAGATCAGGAAACTCGAAGTGGCTGTGTGACCGGTGCAATCAAGTATTTGAGGATTGCGATTACAGGTATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACCGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAGTTGTACATGTTGAAGTATGAACAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAGGTAAAATTTTCGATCAATTTCTGTTTAGACTCAAAATCAAGGAGGAGATGTACGGGGATGAACAGAGAGTGAAAAATACTGTAGTTAAGGCAGATAAGGAGCCGCATATTACACACAAAACACAGAACCAACCACTACAGACAATGGAACATCATGGGACGACGGCATTATGA

Protein sequence

MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENVAQKAMPSGNLEQPAKVGNRLVSARNPVNNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDTIPRQQFSFRPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNKEGQNLQEMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDGGGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQVFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEIIRGKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADKEPHITHKTQNQPLQTMEHHGTTAL

Homology

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BLAST of CmaCh05G014090 vs. ExPASy Swiss-Prot
Match: Q9SKI4 (Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 885.9 bits (2288), Expect = 2.6e-256
Identity = 433/624 (69.39%), Postives = 523/624 (83.81%), Query Frame = 0


Query: 1   MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG----NTQERYSLLISDAVSTEQAMLAT 60
           MPV LTPNAI+AI  GDVN KPL+QVL+IK+IG     +QERY  LISD VS + AM+A 
Sbjct: 1   MPVSLTPNAITAIHDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAV 60

Query: 61  QLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENV 120
           QLND +K+G+ +KGS++QLIDY+CS +K RK+IVVL++ETI+  SE IGNP    +++  
Sbjct: 61  QLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTE 120

Query: 121 AQKAMP-SGNLEQPAKV--------------GNRLVSARNPVNNVQSFQATVQPPYQPPP 180
           AQK    +GN+  P +V                R V+ +N  NN  SF+ +VQP YQPP 
Sbjct: 121 AQKTFSGTGNIPPPNRVVFNEPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPA 180

Query: 181 NYKNHGAIIKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLL 240
           +Y+NHG I+KNEAPARVIPIAALNPYQGRWAIKARVTAKGD+RRYNNAKGDGKVFSFDLL
Sbjct: 181 SYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLL 240

Query: 241 DSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTV 300
           D DGGEIRVTCFNA+VDRFY+V EVGKVYLISKGSLKPA+K+FNHLKNEWE+FLE++STV
Sbjct: 241 DYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTV 300

Query: 301 EHCPDEDDTIPRQQFSFRPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVL 360
           E CPDED +IP+QQFSFRPIS+IENAE N+ILDVIG+VTS+NPS+P+LRKNGMET RR+L
Sbjct: 301 ELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRIL 360

Query: 361 NLKDASGRSVELTLWGDFCNKEGQNLQEMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQ 420
           NLKD SG++VE+TLWG+FCN++G+ L+EM++S   PVLA+K+GKVSDF+GKS+GTISSTQ
Sbjct: 361 NLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQ 420

Query: 421 LFVNPDLSEALILRDWYDGGGKNTTSLSISKEIMSGS-AKNEIRKSVSQIKDEGLGRSDK 480
           LF+NPD  EA  LR W+D GGK+T S SIS++ M G  ++NEIRK+VSQIK+EGLGRSDK
Sbjct: 421 LFINPDFPEAHKLRTWFDYGGKDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDK 480

Query: 481 PDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQVFEDCDYRY 540
           PDWITVKATISFIKTDSFCYTACPLMIGD+QCNKKVTRSG ++WLCDRCNQ  ++CDYRY
Sbjct: 481 PDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRY 540

Query: 541 LLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEIIRGKIFDQFLF 600
           LLQ QIQDHTGLTW+TAFQETGEEI+G  AK+LY +KYE + + +F EI+R ++F Q++ 
Sbjct: 541 LLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYML 600

Query: 601 RLKIKEEMYGDEQRVKNTVVKADK 605
           +LKIKEE YGDEQRVK TVVK DK
Sbjct: 601 KLKIKEESYGDEQRVKMTVVKVDK 624

[Close]

BLAST of CmaCh05G014090 vs. ExPASy Swiss-Prot
Match: Q6YZ49 (Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 757.7 bits (1955), Expect = 1.1e-217
Identity = 365/632 (57.75%), Postives = 482/632 (76.27%), Query Frame = 0


Query: 5   LTPNAISAIVAGDVNSKPLVQVLDIKLI-----GNTQ-ERYSLLISDAVSTEQAMLATQL 64
           LTPN ++A +AGD N KP++Q+++++ +     G T+ ER+  ++SD  +   A+ A QL
Sbjct: 6   LTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSALFAAQL 65

Query: 65  NDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKS--------- 124
           +D  ++G +++GS++QL +YV + +  R++IV+L+LE ++ + EIIGNP +         
Sbjct: 66  SDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTALSETGSPIP 125

Query: 125 -----------------SAQSENVAQKAMPSGNLEQPAKVGNRLVSARNPVNNVQSFQAT 184
                            +  S N   K   +  L Q +  GN    A  P + V  FQ T
Sbjct: 126 NPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNFATRPSDKVPVFQPT 185

Query: 185 VQPPYQPPPNYKNHGAIIKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGD 244
           VQP Y+P PNYKNHGAI+KNEAPAR+IPI+ALNPYQGRWAIKARVTAKGD+RRY+NAKGD
Sbjct: 186 VQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYHNAKGD 245

Query: 245 GKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWE 304
           GKVFSFDLLDSDGGEIRVTCFNA++DRFYEV+EVGKVY++S+G+L+PA+K++NHL NEWE
Sbjct: 246 GKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWE 305

Query: 305 VFLEASSTVEHCPDEDDTIPRQQFSFRPISEIENAETNSILDVIGIVTSINPSIPVLRKN 364
           + LE  STV+ CPDE+ +IP Q+F FRPI+EIE+A+ N+ILD+IG+VTS+NP   + RKN
Sbjct: 306 ILLENGSTVDLCPDENSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKN 365

Query: 365 GMETQRRVLNLKDASGRSVELTLWGDFCNKEGQNLQEMINSGLSPVLAVKSGKVSDFTGK 424
           GMETQ+R +NLKD SGRSVE+T+WGDFCN+EG  LQ M+  G+ PVLAVK+GKVSDF+GK
Sbjct: 366 GMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKAGKVSDFSGK 425

Query: 425 SIGTISSTQLFVNPDLSEALILRDWYDGGGKNTTSLSISKEIMSGSAKNEIRKSVSQIKD 484
           S+GTISSTQLF+NPD +EA  LR W+D GG++ ++ SIS++I  G+++NEIRK+V+QIKD
Sbjct: 426 SVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISRDITPGASRNEIRKTVAQIKD 485

Query: 485 EGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQV 544
           EGLG  DKPDWITVKAT+ F K +SF YTACP MIGDRQCNKKVT+S N  W CD+C++ 
Sbjct: 486 EGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQCNKKVTKSTNGNWTCDKCDRE 545

Query: 545 FEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEIIRG 604
           FE+CDYRYLLQ QIQDH+G  WVTAFQE G+E+LG SA EL  LK  +++D +F + +  
Sbjct: 546 FEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNALK--EREDPRFADTMLN 605

[Close]

BLAST of CmaCh05G014090 vs. ExPASy Swiss-Prot
Match: F4JSG3 (Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana OX=3702 GN=RPA1E PE=2 SV=1)

HSP 1 Score: 622.5 bits (1604), Expect = 5.3e-177
Identity = 320/656 (48.78%), Postives = 447/656 (68.14%), Query Frame = 0


Query: 1   MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLI----GNTQERYSLLISDAVSTEQA 60
           M V LT  AI  I+ G+V ++    P++QV D+K I      T+ER+ +++SD     Q 
Sbjct: 1   MEVSLTAGAIGKIMNGEVTTEADMIPVLQVTDLKQIMAQQDPTRERFRMVLSDGTYLHQG 60

Query: 61  MLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQ 120
           ML T LN+++K G ++ GS+++L  +V   IK R++++V  LE +   S+IIG+P    +
Sbjct: 61  MLGTDLNNLVKEGTLQPGSIVRLTRFVGDVIKGRRIVIVPQLEVLKQISDIIGHPVPGGK 120

Query: 121 SENVAQKAMPSG---NLEQPAKVGNRLVS-------------------ARNPVNNVQSFQ 180
             +  Q+   SG   N  +    G R V+                   +  P +   S +
Sbjct: 121 HND--QRGADSGIKFNTTEQQGSGIRQVNNIEPGRSNAAISPQVGGTGSSVPASTTPSTR 180

Query: 181 ATVQP----------------------PYQPPPNYKNHGAIIKNEAPARVIPIAALNPYQ 240
           A   P                      P  PPP Y N G + +NEAP ++IP+ AL+PY 
Sbjct: 181 AYSNPSSGNGVTRQDYARDPPTSYPHQPQPPPPMYANRGPVARNEAPPKIIPVNALSPYS 240

Query: 241 GRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGK 300
           GRW IKARVT K  L++Y+N +G+GKVF+FDLLD+DGGEIRVTCFNAV D+FY+ I VG 
Sbjct: 241 GRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVADQFYDQIVVGN 300

Query: 301 VYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDTIPRQQFSFRPISEIENAE 360
           +YLIS+GSL+PA+K+FNHL+N++E+ L+ +ST++ C +ED  IPR QF FR I +IE+ E
Sbjct: 301 LYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIESME 360

Query: 361 TNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNKEGQNLQ 420
            N I+DVIGIV+SI+P++ + RKNG  T +R L LKD SGRSVE+T+WGDFCN EGQ LQ
Sbjct: 361 NNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQ 420

Query: 421 EMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDGGGKNTTSL 480
            + +SG+ PVLAVK+G++S+F GK++ TI S+QLF++PD  EA  L++W++  GK+   +
Sbjct: 421 SLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVPCI 480

Query: 481 SISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIG 540
           S+S+E  SGS K ++RK++SQIKDE LG S+KPDWITV ATI ++K D+FCYTACP+M G
Sbjct: 481 SLSRE-FSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMNG 540

Query: 541 DRQCNKKVTRSGNSKWLCDRCNQVFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGV 600
           DR C+KKVT +G+  W C++C++  ++CDYRY+LQ QIQDHT LT VTAFQE GEEI+G+
Sbjct: 541 DRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGI 600

Query: 601 SAKELYMLKYEQQDDVKFGEIIRGKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADK 605
           SAK+LY +K E +D+ KF +IIR   F ++ F+LK+KEE + DEQRVK TVVK DK
Sbjct: 601 SAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDK 653

[Close]

BLAST of CmaCh05G014090 vs. ExPASy Swiss-Prot
Match: Q9FHJ6 (Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana OX=3702 GN=RPA1C PE=3 SV=1)

HSP 1 Score: 618.2 bits (1593), Expect = 1.0e-175
Identity = 331/725 (45.66%), Postives = 444/725 (61.24%), Query Frame = 0


Query: 1   MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGN-------TQERYSLLISDAVST 60
           M V LT   +  ++ G+V S+    P++QV ++KLI +       +  RY  L+SD    
Sbjct: 1   MAVSLTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDL 60

Query: 61  EQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKS 120
              ML T LN ++  G ++ GSVI+L  Y+C+ I++R+++V++ LE I+    IIGNPK 
Sbjct: 61  AAGMLNTSLNSLVNQGTIQLGSVIRLTHYICNLIQTRRIVVIMQLEVIVEKCNIIGNPKE 120

Query: 121 SAQS----------------------------------------------ENVAQKAMPS 180
              S                                               + A +   S
Sbjct: 121 PGHSSINPQRGGVNTQSNGGSEQQQARRSDVNGGRYGVSANSPQPQVVHNSSDAGRYCVS 180

Query: 181 GNLEQPAKV------GNRLVSARNPVNNV------------------------------- 240
            N  QP  V      G   VSA +P   V                               
Sbjct: 181 ANSPQPQVVHSSSDAGRYGVSANSPQRQVVHNSPDAGRYGQPQVSQRYGTGSGYPETSPS 240

Query: 241 -------------------------QSFQATVQPPYQP--PPNYKNHGAIIKNEAPARVI 300
                                     ++   VQ  YQP  PP Y N G + +NEAP R+ 
Sbjct: 241 TRPYVSSNAGYGGSRQDQPRAPTATTAYSRPVQSAYQPQQPPMYVNRGPVARNEAPPRIN 300

Query: 301 PIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 360
           PIAALNPYQGRW IK RVT+K DLRR+NN +G+GK+FSFDLLD+DGGEIRVTCFN  VD+
Sbjct: 301 PIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQ 360

Query: 361 FYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDTIPRQQFSFR 420
           F++ I VG VYLIS+G+LKPA+K+FNHL N++E+ L+++ST++ C D D TIPR  F FR
Sbjct: 361 FFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPCED-DGTIPRYHFHFR 420

Query: 421 PISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDF 480
            I +IEN E NS  DVIGIV+SI+P++ ++RKN  E Q+R L LKD SGRSVE+T+WG+F
Sbjct: 421 NIGDIENMENNSTTDVIGIVSSISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNF 480

Query: 481 CNKEGQNLQEMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYD 540
           CN EGQ LQ + +SG+ PVLA+K+G++ +F GK + TI ++Q F+ PD  EA  LR WY+
Sbjct: 481 CNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGASQFFIEPDFPEARELRQWYE 540

Query: 541 GGGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFC 600
             G+N    SIS+E  SG  + E+RK ++QIKDE LG S+KPDWITV ATISF+K ++FC
Sbjct: 541 REGRNAHFTSISRE-FSGVGRQEVRKVIAQIKDEKLGTSEKPDWITVCATISFMKVENFC 600

Query: 601 YTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQVFEDCDYRYLLQAQIQDHTGLTWVTAFQ 605
           YTACP+M GDR C+KKVT +G+  W C++C++  ++CDYRY+LQ Q+QDHT LTW TAFQ
Sbjct: 601 YTACPIMNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQ 660

[Close]

BLAST of CmaCh05G014090 vs. ExPASy Swiss-Prot
Match: Q65XV7 (Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1C PE=1 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 6.5e-151
Identity = 301/735 (40.95%), Postives = 431/735 (58.64%), Query Frame = 0


Query: 1   MPVHLTPNAISAIVA---GDVNSKPLVQVLDIKLIGNTQ--------ERYSLLISDAVST 60
           M   LTP A+ AI     G    +P++QV+D++ +            ER+ +++SD V+T
Sbjct: 1   MEPQLTPGAVQAIAEHPDGTGTIQPVLQVVDVRPVTTKNAPPTPKPAERFRMMLSDGVNT 60

Query: 61  EQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPK- 120
           +Q+MLAT LN ++K   ++ G+V+QL D++C+ I+ +++I+V+ L+ +  D  +IGNPK 
Sbjct: 61  QQSMLATALNPLVKDATLRPGTVVQLTDFMCNTIQGKRIIIVVKLDVLQNDCIVIGNPKH 120

Query: 121 ----------------SSAQSEN-------------VAQKAMPS---------------- 180
                           S AQ+ N             VA +A  +                
Sbjct: 121 YEPKSLTKEQDPNLQASVAQTNNGTYSGGASMLGPSVAPRAEQAASNSSYGGPYNSAQGM 180

Query: 181 -----GNLEQP-----AKVGN-RLVSARNPVN---------------------------N 240
                G   +P     + VG+   +SA+N  N                           N
Sbjct: 181 LGSSIGRTVEPGPANVSAVGSYGAISAQNTTNANMMQPTSQLNIMNANTMQPTSQLNTMN 240

Query: 241 VQSFQATVQ----------------------PP------------YQPPPNYKNHGAIIK 300
             + Q T Q                      PP             QPPP Y N G   +
Sbjct: 241 ANTMQPTSQLSSLNPNQNQRFAAPASGGVFGPPGNAYGQPSRPSYQQPPPVYMNRGPASR 300

Query: 301 NEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVT 360
           N++  R+IPI ALNPYQ +W IKARVTAK D+R ++NA+  G VFSFDLLD+ GGEIR  
Sbjct: 301 NDSATRIIPITALNPYQPKWTIKARVTAKSDIRHWSNARSSGTVFSFDLLDAQGGEIRAQ 360

Query: 361 CFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEAS-STVEHCPDEDDT 420
           C+    D+F+  IEVG+VYLIS+GSLKPA+K +N L +++E+ L+   STVE C D+D++
Sbjct: 361 CWKESADKFFGQIEVGRVYLISRGSLKPAQKKYNTLNHDYEITLDIGLSTVEVCSDDDNS 420

Query: 421 IPRQQFSFRPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRS 480
           IPR Q++FR ISE+EN    +I+D++G+VTS++PS  ++RK G ET++R + LKD SGRS
Sbjct: 421 IPRLQYNFRQISELENMANETIVDLLGVVTSVSPSATIMRKIGTETRKRSIQLKDLSGRS 480

Query: 481 VELTLWGDFCNKEGQNLQEMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSE 540
           +E+TLWG+FC+ EGQ LQ   +SG +P++A K  +V DF GKS+ TI STQL +NPD  E
Sbjct: 481 IEVTLWGNFCDAEGQQLQLQCDSGSNPIIAFKGARVGDFNGKSVSTIGSTQLIINPDFPE 540

Query: 541 ALILRDWYDGGGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATI 600
              LR WY   GK    +S+S+E+++   + + RK+++QIKDE LGR +KPDWITVKA I
Sbjct: 541 VERLRQWYMTEGKTAPCISLSREMLN-MGRTDARKTIAQIKDENLGRLEKPDWITVKAAI 600

Query: 601 SFIKTDSFCYTACP-LMIGDRQCNKKVTRSGNSKWLCDRCNQVFEDCDYRYLLQAQIQDH 605
           S + T+SFCY ACP L+   RQCNKK   +G+  W CDRC++ F++ +YRY+L+ QIQDH
Sbjct: 601 SHVTTESFCYPACPKLLPVGRQCNKKAINNGDGMWHCDRCDESFQNPEYRYMLRFQIQDH 660

[Close]

BLAST of CmaCh05G014090 vs. TAIR 10
Match: AT2G06510.1 (replication protein A 1A )

HSP 1 Score: 885.9 bits (2288), Expect = 1.8e-257
Identity = 433/624 (69.39%), Postives = 523/624 (83.81%), Query Frame = 0


Query: 1   MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIG----NTQERYSLLISDAVSTEQAMLAT 60
           MPV LTPNAI+AI  GDVN KPL+QVL+IK+IG     +QERY  LISD VS + AM+A 
Sbjct: 1   MPVSLTPNAITAIHDGDVNLKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAV 60

Query: 61  QLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENV 120
           QLND +K+G+ +KGS++QLIDY+CS +K RK+IVVL++ETI+  SE IGNP    +++  
Sbjct: 61  QLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTE 120

Query: 121 AQKAMP-SGNLEQPAKV--------------GNRLVSARNPVNNVQSFQATVQPPYQPPP 180
           AQK    +GN+  P +V                R V+ +N  NN  SF+ +VQP YQPP 
Sbjct: 121 AQKTFSGTGNIPPPNRVVFNEPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPA 180

Query: 181 NYKNHGAIIKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLL 240
           +Y+NHG I+KNEAPARVIPIAALNPYQGRWAIKARVTAKGD+RRYNNAKGDGKVFSFDLL
Sbjct: 181 SYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLL 240

Query: 241 DSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTV 300
           D DGGEIRVTCFNA+VDRFY+V EVGKVYLISKGSLKPA+K+FNHLKNEWE+FLE++STV
Sbjct: 241 DYDGGEIRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTV 300

Query: 301 EHCPDEDDTIPRQQFSFRPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVL 360
           E CPDED +IP+QQFSFRPIS+IENAE N+ILDVIG+VTS+NPS+P+LRKNGMET RR+L
Sbjct: 301 ELCPDEDGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGMETHRRIL 360

Query: 361 NLKDASGRSVELTLWGDFCNKEGQNLQEMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQ 420
           NLKD SG++VE+TLWG+FCN++G+ L+EM++S   PVLA+K+GKVSDF+GKS+GTISSTQ
Sbjct: 361 NLKDESGKAVEVTLWGEFCNRDGRQLEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQ 420

Query: 421 LFVNPDLSEALILRDWYDGGGKNTTSLSISKEIMSGS-AKNEIRKSVSQIKDEGLGRSDK 480
           LF+NPD  EA  LR W+D GGK+T S SIS++ M G  ++NEIRK+VSQIK+EGLGRSDK
Sbjct: 421 LFINPDFPEAHKLRTWFDYGGKDTASFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDK 480

Query: 481 PDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQVFEDCDYRY 540
           PDWITVKATISFIKTDSFCYTACPLMIGD+QCNKKVTRSG ++WLCDRCNQ  ++CDYRY
Sbjct: 481 PDWITVKATISFIKTDSFCYTACPLMIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRY 540

Query: 541 LLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEIIRGKIFDQFLF 600
           LLQ QIQDHTGLTW+TAFQETGEEI+G  AK+LY +KYE + + +F EI+R ++F Q++ 
Sbjct: 541 LLQVQIQDHTGLTWITAFQETGEEIMGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYML 600

Query: 601 RLKIKEEMYGDEQRVKNTVVKADK 605
           +LKIKEE YGDEQRVK TVVK DK
Sbjct: 601 KLKIKEESYGDEQRVKMTVVKVDK 624

[Close]

BLAST of CmaCh05G014090 vs. TAIR 10
Match: AT2G06510.2 (replication protein A 1A )

HSP 1 Score: 851.3 bits (2198), Expect = 5.0e-247
Identity = 414/599 (69.12%), Postives = 502/599 (83.81%), Query Frame = 0


Query: 26  VLDIKLIG----NTQERYSLLISDAVSTEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCS 85
           VL+IK+IG     +QERY  LISD VS + AM+A QLND +K+G+ +KGS++QLIDY+CS
Sbjct: 3   VLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDYICS 62

Query: 86  PIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENVAQKAMP-SGNLEQPAKV-------- 145
            +K RK+IVVL++ETI+  SE IGNP    +++  AQK    +GN+  P +V        
Sbjct: 63  DVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTGNIPPPNRVVFNEPMVQ 122

Query: 146 ------GNRLVSARNPVNNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARVIPIAALNP 205
                   R V+ +N  NN  SF+ +VQP YQPP +Y+NHG I+KNEAPARVIPIAALNP
Sbjct: 123 HSVNRAPPRGVNIQNQANNTPSFRPSVQPSYQPPASYRNHGPIMKNEAPARVIPIAALNP 182

Query: 206 YQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEV 265
           YQGRWAIKARVTAKGD+RRYNNAKGDGKVFSFDLLD DGGEIRVTCFNA+VDRFY+V EV
Sbjct: 183 YQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRFYDVTEV 242

Query: 266 GKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDTIPRQQFSFRPISEIEN 325
           GKVYLISKGSLKPA+K+FNHLKNEWE+FLE++STVE CPDED +IP+QQFSFRPIS+IEN
Sbjct: 243 GKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDGSIPKQQFSFRPISDIEN 302

Query: 326 AETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNKEGQN 385
           AE N+ILDVIG+VTS+NPS+P+LRKNGMET RR+LNLKD SG++VE+TLWG+FCN++G+ 
Sbjct: 303 AENNTILDVIGVVTSVNPSVPILRKNGMETHRRILNLKDESGKAVEVTLWGEFCNRDGRQ 362

Query: 386 LQEMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDGGGKNTT 445
           L+EM++S   PVLA+K+GKVSDF+GKS+GTISSTQLF+NPD  EA  LR W+D GGK+T 
Sbjct: 363 LEEMVDSAFHPVLAIKAGKVSDFSGKSVGTISSTQLFINPDFPEAHKLRTWFDYGGKDTA 422

Query: 446 SLSISKEIMSGS-AKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPL 505
           S SIS++ M G  ++NEIRK+VSQIK+EGLGRSDKPDWITVKATISFIKTDSFCYTACPL
Sbjct: 423 SFSISRDTMPGGVSRNEIRKNVSQIKEEGLGRSDKPDWITVKATISFIKTDSFCYTACPL 482

Query: 506 MIGDRQCNKKVTRSGNSKWLCDRCNQVFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEI 565
           MIGD+QCNKKVTRSG ++WLCDRCNQ  ++CDYRYLLQ QIQDHTGLTW+TAFQETGEEI
Sbjct: 483 MIGDKQCNKKVTRSGTNRWLCDRCNQESDECDYRYLLQVQIQDHTGLTWITAFQETGEEI 542

Query: 566 LGVSAKELYMLKYEQQDDVKFGEIIRGKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADK 605
           +G  AK+LY +KYE + + +F EI+R ++F Q++ +LKIKEE YGDEQRVK TVVK DK
Sbjct: 543 MGCPAKKLYAMKYELEKEEEFAEIVRDRLFHQYMLKLKIKEESYGDEQRVKMTVVKVDK 601

[Close]

BLAST of CmaCh05G014090 vs. TAIR 10
Match: AT4G19130.1 (Replication factor-A protein 1-related )

HSP 1 Score: 622.5 bits (1604), Expect = 3.8e-178
Identity = 320/656 (48.78%), Postives = 447/656 (68.14%), Query Frame = 0


Query: 1   MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLI----GNTQERYSLLISDAVSTEQA 60
           M V LT  AI  I+ G+V ++    P++QV D+K I      T+ER+ +++SD     Q 
Sbjct: 1   MEVSLTAGAIGKIMNGEVTTEADMIPVLQVTDLKQIMAQQDPTRERFRMVLSDGTYLHQG 60

Query: 61  MLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQ 120
           ML T LN+++K G ++ GS+++L  +V   IK R++++V  LE +   S+IIG+P    +
Sbjct: 61  MLGTDLNNLVKEGTLQPGSIVRLTRFVGDVIKGRRIVIVPQLEVLKQISDIIGHPVPGGK 120

Query: 121 SENVAQKAMPSG---NLEQPAKVGNRLVS-------------------ARNPVNNVQSFQ 180
             +  Q+   SG   N  +    G R V+                   +  P +   S +
Sbjct: 121 HND--QRGADSGIKFNTTEQQGSGIRQVNNIEPGRSNAAISPQVGGTGSSVPASTTPSTR 180

Query: 181 ATVQP----------------------PYQPPPNYKNHGAIIKNEAPARVIPIAALNPYQ 240
           A   P                      P  PPP Y N G + +NEAP ++IP+ AL+PY 
Sbjct: 181 AYSNPSSGNGVTRQDYARDPPTSYPHQPQPPPPMYANRGPVARNEAPPKIIPVNALSPYS 240

Query: 241 GRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGK 300
           GRW IKARVT K  L++Y+N +G+GKVF+FDLLD+DGGEIRVTCFNAV D+FY+ I VG 
Sbjct: 241 GRWTIKARVTNKAALKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVADQFYDQIVVGN 300

Query: 301 VYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDTIPRQQFSFRPISEIENAE 360
           +YLIS+GSL+PA+K+FNHL+N++E+ L+ +ST++ C +ED  IPR QF FR I +IE+ E
Sbjct: 301 LYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIKQCYEEDAAIPRHQFHFRTIGDIESME 360

Query: 361 TNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNKEGQNLQ 420
            N I+DVIGIV+SI+P++ + RKNG  T +R L LKD SGRSVE+T+WGDFCN EGQ LQ
Sbjct: 361 NNCIVDVIGIVSSISPTVTITRKNGTATPKRSLQLKDMSGRSVEVTMWGDFCNAEGQRLQ 420

Query: 421 EMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDGGGKNTTSL 480
            + +SG+ PVLAVK+G++S+F GK++ TI S+QLF++PD  EA  L++W++  GK+   +
Sbjct: 421 SLCDSGVFPVLAVKAGRISEFNGKTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKSVPCI 480

Query: 481 SISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIG 540
           S+S+E  SGS K ++RK++SQIKDE LG S+KPDWITV ATI ++K D+FCYTACP+M G
Sbjct: 481 SLSRE-FSGSGKVDVRKTISQIKDEKLGTSEKPDWITVSATILYLKFDNFCYTACPIMNG 540

Query: 541 DRQCNKKVTRSGNSKWLCDRCNQVFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGV 600
           DR C+KKVT +G+  W C++C++  ++CDYRY+LQ QIQDHT LT VTAFQE GEEI+G+
Sbjct: 541 DRPCSKKVTDNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGI 600

Query: 601 SAKELYMLKYEQQDDVKFGEIIRGKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADK 605
           SAK+LY +K E +D+ KF +IIR   F ++ F+LK+KEE + DEQRVK TVVK DK
Sbjct: 601 SAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKEETFSDEQRVKATVVKVDK 653

[Close]

BLAST of CmaCh05G014090 vs. TAIR 10
Match: AT5G45400.1 (Replication factor-A protein 1-related )

HSP 1 Score: 618.2 bits (1593), Expect = 7.1e-177
Identity = 331/725 (45.66%), Postives = 444/725 (61.24%), Query Frame = 0


Query: 1   MPVHLTPNAISAIVAGDVNSK----PLVQVLDIKLIGN-------TQERYSLLISDAVST 60
           M V LT   +  ++ G+V S+    P++QV ++KLI +       +  RY  L+SD    
Sbjct: 1   MAVSLTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDL 60

Query: 61  EQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKS 120
              ML T LN ++  G ++ GSVI+L  Y+C+ I++R+++V++ LE I+    IIGNPK 
Sbjct: 61  AAGMLNTSLNSLVNQGTIQLGSVIRLTHYICNLIQTRRIVVIMQLEVIVEKCNIIGNPKE 120

Query: 121 SAQS----------------------------------------------ENVAQKAMPS 180
              S                                               + A +   S
Sbjct: 121 PGHSSINPQRGGVNTQSNGGSEQQQARRSDVNGGRYGVSANSPQPQVVHNSSDAGRYCVS 180

Query: 181 GNLEQPAKV------GNRLVSARNPVNNV------------------------------- 240
            N  QP  V      G   VSA +P   V                               
Sbjct: 181 ANSPQPQVVHSSSDAGRYGVSANSPQRQVVHNSPDAGRYGQPQVSQRYGTGSGYPETSPS 240

Query: 241 -------------------------QSFQATVQPPYQP--PPNYKNHGAIIKNEAPARVI 300
                                     ++   VQ  YQP  PP Y N G + +NEAP R+ 
Sbjct: 241 TRPYVSSNAGYGGSRQDQPRAPTATTAYSRPVQSAYQPQQPPMYVNRGPVARNEAPPRIN 300

Query: 301 PIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDR 360
           PIAALNPYQGRW IK RVT+K DLRR+NN +G+GK+FSFDLLD+DGGEIRVTCFN  VD+
Sbjct: 301 PIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQ 360

Query: 361 FYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASSTVEHCPDEDDTIPRQQFSFR 420
           F++ I VG VYLIS+G+LKPA+K+FNHL N++E+ L+++ST++ C D D TIPR  F FR
Sbjct: 361 FFDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPCED-DGTIPRYHFHFR 420

Query: 421 PISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDF 480
            I +IEN E NS  DVIGIV+SI+P++ ++RKN  E Q+R L LKD SGRSVE+T+WG+F
Sbjct: 421 NIGDIENMENNSTTDVIGIVSSISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNF 480

Query: 481 CNKEGQNLQEMINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYD 540
           CN EGQ LQ + +SG+ PVLA+K+G++ +F GK + TI ++Q F+ PD  EA  LR WY+
Sbjct: 481 CNAEGQKLQNLCDSGVFPVLALKAGRIGEFNGKQVSTIGASQFFIEPDFPEARELRQWYE 540

Query: 541 GGGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFC 600
             G+N    SIS+E  SG  + E+RK ++QIKDE LG S+KPDWITV ATISF+K ++FC
Sbjct: 541 REGRNAHFTSISRE-FSGVGRQEVRKVIAQIKDEKLGTSEKPDWITVCATISFMKVENFC 600

Query: 601 YTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQVFEDCDYRYLLQAQIQDHTGLTWVTAFQ 605
           YTACP+M GDR C+KKVT +G+  W C++C++  ++CDYRY+LQ Q+QDHT LTW TAFQ
Sbjct: 601 YTACPIMNGDRPCSKKVTNNGDGTWRCEKCDKCVDECDYRYILQIQLQDHTDLTWATAFQ 660

[Close]

BLAST of CmaCh05G014090 vs. TAIR 10
Match: AT5G61000.1 (Replication factor-A protein 1-related )

HSP 1 Score: 327.0 bits (837), Expect = 3.3e-89
Identity = 219/629 (34.82%), Postives = 345/629 (54.85%), Query Frame = 0


Query: 1   MPVHLTPNAISAIV------AGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAML 60
           M   +TP+AIS ++      +    S+ +VQV+D+K IGN   RY+   +D  +  +AM 
Sbjct: 1   MQTSVTPDAISTVLSNPSFDSSSDRSEIVVQVVDLKPIGN---RYTFSANDGKTKVKAMF 60

Query: 61  ATQLNDIIKTGRVKKGSVIQLIDYVCSPI--KSRKVIVVLSLETI--ILDSEIIGNPKSS 120
              L   I +G+++   +I+LID+  + I  KS K  +V   E +  +LDSEI  + KS 
Sbjct: 61  TASLTPEIISGKIQNLGLIRLIDFTVNDISSKSTKYFLVTKCEAVGSVLDSEINLDSKSG 120

Query: 121 AQSENVAQKAMPSGNLEQPAKVGNRLVSARNPVNNVQSFQATVQPPYQPPPNYKNHGAII 180
            +     +K      LE          S  +P+N+V S   T++P  +     K+   I+
Sbjct: 121 EEEAREPKKQ----KLEH---------SPVSPLNDVVSTGITLKPKQEFVA--KSASQIM 180

Query: 181 K----NEAPA-------RVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFD 240
                N APA       RV P+ +LNPYQG W IK RVT KG +R Y NA+G+G VF+ +
Sbjct: 181 SEQRGNAAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVE 240

Query: 241 LLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLKNEWEVFLEASS 300
           L D +G +I+ T FN    +F++  ++GKVY IS+GSLK A K F  ++N++E+ L  +S
Sbjct: 241 LTDEEGTQIQATMFNDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENS 300

Query: 301 TVEHCPDEDDTIPRQQFSFRPISEIE-NAETNSILDVIGIVTSINPSIPVLRKNGME-TQ 360
            VE    E+  IP  +F+F PI E+        ++D+IG+V S++P++ + R+   E   
Sbjct: 301 EVEEASSEEMFIPETKFNFVPIEELGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIP 360

Query: 361 RRVLNLKDASGRSVELTLWGDFCNKEGQNLQEMINSGLSPVLAVKSGKVSDFTGKSIGTI 420
           +R + L D S ++V ++LW D     GQ L +M +   SPV+A+KS KV DF G S+ TI
Sbjct: 361 KRDITLADESRKTVVVSLWNDLATGIGQELLDMADQ--SPVIAIKSLKVGDFQGVSLSTI 420

Query: 421 SSTQLFVNPDLSEALILRDWYDGGGKNTTSLSISKEIMSGSAKNEIRK------SVSQIK 480
           S + + +NP+  EA  L+ W+D  GK  +  SI    MS SAKN  R        +S I 
Sbjct: 421 SRSNVVINPESPEAKKLKSWFDSEGKEISMSSIGSG-MSPSAKNGSRSLYTDRVLLSHIT 480

Query: 481 DEGLGRSDKPDWITVKATISFIKTD-SFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCN 540
                  +KP + + +A ISFIK D +  Y AC      + CNKKVT + +S + C+ C 
Sbjct: 481 SNPSLFEEKPVFFSTRAYISFIKPDQTMWYQAC------KTCNKKVTEALDSGYWCEGCQ 540

Query: 541 QVFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYMLKYEQQDDVKFGEII 600
           + +E+C  RY++  ++ D +G TW+++F +  E+ILG SA EL  LK E+ +  ++   +
Sbjct: 541 RKYEECSLRYIMAVKVTDSSGETWISSFNDEAEKILGCSADELNKLKSEEGEVNEYQTKL 600

The following BLAST results are available for this feature:

BLAST of CmaCh05G014090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKI4	2.6e-256	69.39	Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=37...	[more]
Q6YZ49	1.1e-217	57.75	Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japoni...	[more]
F4JSG3	5.3e-177	48.78	Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana OX=37...	[more]
Q9FHJ6	1.0e-175	45.66	Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana OX=37...	[more]
Q65XV7	6.5e-151	40.95	Replication protein A 70 kDa DNA-binding subunit C OS=Oryza sativa subsp. japoni...	[more]

BLAST of CmaCh05G014090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06510.1	1.8e-257	69.39	replication protein A 1A	[more]
AT2G06510.2	5.0e-247	69.12	replication protein A 1A	[more]
AT4G19130.1	3.8e-178	48.78	Replication factor-A protein 1-related	[more]
AT5G45400.1	7.1e-177	45.66	Replication factor-A protein 1-related	[more]
AT5G61000.1	3.3e-89	34.82	Replication factor-A protein 1-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 177..287 e-value: 4.6E-35 score: 122.1
None	No IPR available	GENE3D	2.40.50.140		coord: 290..429 e-value: 2.3E-36 score: 126.6
None	No IPR available	GENE3D	2.40.50.140		coord: 3..111 e-value: 5.4E-28 score: 99.3
None	No IPR available	GENE3D	2.40.50.140		coord: 430..621 e-value: 5.8E-51 score: 174.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 611..628
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 607..628
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..128
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 2..600
None	No IPR available	PANTHER	PTHR23273:SF47	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A	coord: 2..600
None	No IPR available	CDD	cd04475	RPA1_DBD_B	coord: 312..419 e-value: 3.62982E-30 score: 112.293
None	No IPR available	CDD	cd04474	RPA1_DBD_A	coord: 180..283 e-value: 2.63741E-49 score: 165.112
IPR031657	Replication protein A, OB domain	PFAM	PF16900	REPA_OB_2	coord: 301..405 e-value: 3.4E-29 score: 100.7
IPR007199	Replication factor-A protein 1, N-terminal	PFAM	PF04057	Rep-A_N	coord: 5..97 e-value: 8.0E-28 score: 96.4
IPR007199	Replication factor-A protein 1, N-terminal	CDD	cd04477	RPA1N	coord: 9..98 e-value: 3.5424E-28 score: 106.513
IPR004591	Replication factor A protein 1	TIGRFAM	TIGR00617	TIGR00617	coord: 4..604 e-value: 1.5E-184 score: 612.8
IPR004365	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	PFAM	PF01336	tRNA_anti-codon	coord: 192..263 e-value: 7.9E-9 score: 35.4
IPR013955	Replication factor A, C-terminal	PFAM	PF08646	Rep_fac-A_C	coord: 463..604 e-value: 4.2E-47 score: 159.6
IPR013955	Replication factor A, C-terminal	CDD	cd04476	RPA1_DBD_C	coord: 447..622 e-value: 5.88353E-60 score: 195.605
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 1..106
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 295..425
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 178..291
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 444..605

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G014090.1	CmaCh05G014090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006268	DNA unwinding involved in DNA replication
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0007140	male meiotic nuclear division
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0009555	pollen development
biological_process	GO:0007004	telomere maintenance via telomerase
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005662	DNA replication factor A complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0043047	single-stranded telomeric DNA binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding