CmaCh05G014060 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G014060
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	40S ribosomal protein S3-2-like
Location	Cma_Chr05: 10486789 .. 10491343 (+)
RNA-Seq Expression	CmaCh05G014060
Synteny	CmaCh05G014060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTTGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGATGAATTCTCGCAAGAACACCAAGATTTGATAGCCCAACTCAAAATAGAGCTAAGAAACTCAAGAACAGGAGGACTTCCAACCGTACAAGAAGAAGAAGAGGCAGGCCCAGAATATATGAGTCCTACATCAGTCGAAGTTCTTAAACCTCTCAAAAATGGTGGAAATTTTGAACACAGAACATTCAAAGAGATCCAAAAGGTCTACAAAACTTATGCTCAAAAAATGCGAAAGCTTGACGTCTCCAATACCCAGACAAATTATGCAATTGGTAAGCTATATTAGGATTAATACCTTTTATATTATGAACTGGTGACAAATTGTAGGATTCATTTCAGTAACTATGTGATTTGGTGCAGATTTTATTAAGTTGAAAGATCCATTTAGTTCAATGGATGAAAAGAAATCTGGCCTTAAATCTGTTGTGTCCCACAAGTTAAGGGCAGAGAGAGCTGTTAAGGGCTATCCAAATTTGATGAGAGACTTAAAGAGGGACATGGAAATGGTGTATGTTGGACATCTTTGCCTCTCTTGGGAAGTTCTGCATTGGCAGCATAGGAAGGCCATTGAGCTCCAACAAAACGACACTCGAGGAACCTCTCGGTACACTCGTGTCGTTAATGAATTTCAATTCTTCTGCATCCTCATTCAAAGATTCGTCGAAGACGAGCTGTTTTGCGGCCCTCGAATCAATAACTACGTGAAAAACAGACTTCTTGTTCGTAGTCTCCTTCAAGTTCCAGCCATTAGAGGTTCTATTTGACTTAGCTTTCTAAGTACTTAAAAACACTTATCGTTGTTGAAAAACGCTTACCTTTCTCCCGTGCTTGCAGAGGATTGTGTAAATGACAAAAAGTTGAGAGGCAAAGAAGGTGAAAGTACCATCTCAACTGCAGCTCTAGTATCAATGATCGAAGAATCGATGTGGGTTTTTCGGGATTTTTTACGTGCTGATAAGGATGTCAGGAGTACGAAGATCAAGTGTGCTGAAGTAGAAGTTAATGCACAAGCTATGATGATGGAAATAAGAACTGAGCTGCGAAAGGTGCATTTTTCTTTTGTTTTGTTTAGTTTTGTCATTCAAAGTGATCACTTTGCAGATGGTGAAGTTGATATCAAATTTGGATGTAAATGCAGAAGGAGAGAAGGCTAAAGGAGATAGTGAGAGGTGGGCATTGTATAGTAAAGAAGTTGAAAAGGGTTAGTGAAGTAGAAGAAGGGAGATTGAAGAATGAATTGTTGATAGCGGAGGTTGAACTGAAATTGGTATCAAGAGTGGTGAGTATGTGCAGACTAACGGAGAGCCAATTGGTTTGGTGCCATAAAAAGCTACACCAAATCAATTTTGTGAATAGGAAGGTTATTATAGAACCTTCATTTTCCTTTTTCCCTTCTTGACGTCCTCTAAATCACAATAGTTTCTCCCTATATATGTACTGATCTTCTTCTTCATACATAGAATCAATACGAAGGGCTTGTTTGAAAATAATAATAACAAAAAAACGGACAGAATTTATGTCTGGAAGTATAACCGCTCAAGCTCACCTCTAGTCGATATTGTTTGCTTTAAGCTCGTTATGTATCGCCATCAACCATGACTTTAAAATACATCTATTAGGGAGAGGTTTTCACACCATTGATATTTCACATTGGTTGGAGAACGAAAAGAAAGGTGTGAAAACCTCTCTCTAGTAAATGCGTTTTAAAACCATGGGGTTGATACGGGCCAAAACGGACAATAATTGCTACTGGTGTGTTTGAGTCATTACAAATGGTATCAGAGTCAGACACATTACTAGGGTTATTATTGTATTTTTGTGATTGAGATTTGGAGTTCGAATTTGGCACTGGATGGTCGACATTCTAAATTAACTGAAATTCTTTTTACATGTTTGGTTATCAATCACATGTTTCTAAGAAAATTTATGGTAACTCAAGTTTTAAATCTTATATTATTTAGCCATCAAATAAAAGTTTACCGTGTTAATATGACCAATAACTTTCGATTATTTTAACCATACATTAATTATTATAGCCTCAATCTCATTTTCATTTATATATAATATCGATTAATATTTGTACATCTCCTTTACTCGAGTGTCACACATTTATGTGGTTGACATATAAGAAAATTGTATTTAAAATGGATAAAGTTGAATATGTTATAATGTAATATTAGTTATACGCATAATGTTTATGAATTAATTATTCCAAATATATTTTATTAGACTTCCTTAAAATTCTATTCACGGACAACGTTAATAATATTTTGTTATGAAGGGGCAATATTGGAATACAGATATGCGGTTGCGTAAATTTGGGCTCACTGTGGATGTTCATATTTACAGGTGGGCCTTCTCATTATTGGACCGACGACTGTTGGACCCGATAGTTGGGCTCCTTGGGCCGTATGTATAAGACCGAGGGTGCGTTTATTTGTGCTGAAATCTAAGAACAAATCACGTCCGTTCATTTTGGAAGACCTAGATCCAATACACTTGCATGCAGCTATATAAAGTTCAGTTTGCGGCCGCGCCATTTCTTCCATCGGAACGCGGGCAGCACAAGAGTCTTCCCTTCTCTTAACTCAGCGGCTTCGTTGCTGTCTTTCCAATTTCTCTTTGAAAATGGCGACCCAGATGAGTAAGAAGAGAAAGGTTAGTTCACGAAATTTCTTAATTTGTACTTCTTTCCTCACCATCTCTACAACGATTGATCCGTTCTGTTTTGTATTCATTGTGTTTTCTGTTCGATTTTGTTTCAGTTCGTGGCCGATGGAGTGTTTTTCGCTGAGCTAAACGAGGTTTTGACCAGGGAGTTGGCCGAGGATGGGTACTCCGGTGTCGAGGTTAGAGTCACTCCAATGCGCACTGAGATCATCATCCGAGCAACCCGCACCCAAAACGTTCTCGGTTAGTTTACCTTGGTTTTGAAATTCAATTGATTAAACAACCTGCTTTTTTCGCTCATTGGATTTAATGGCATATTAACATTCATTGATATTACCTTCATAATTTTCTTTGATTTTTTTTTTTGTTATTTAGGAGAAAAAGGTAGGAGGATTAGGGAACTCACCTCAGCTGTGCAGAAGCGGTTCAAGTTTCCAGAGAACAGTGTTGAGCTCTATGCCGAGAAAGTTAACAATAGAGGGCTTTGTGCTATTGCCCAAGCCGAGTCTCTCCGTTATAAGCTACTTGGTGGCCTTGCTGTGCGAAGGTACTTCTTCGTTTTCCTTTCCATAACCACTTAAAGAATTTTTATTATTGTTTTGTTGATTTGTCTTGGAAATGGAAATATGATTTATGATTAGGAAATAATGAAGATCACAGATTCCTTATTTTCTTGCACGCAGTTCTGATATATGGTTCTAACAATCTCATTTATGGGGTGACTTCGTTTTAGTTTCATAAAAGATGGGTTTTTCCTTGATGCTTTCTTATGTCATCTACAAAGCAGATTGGTGTTTTGGTACCAATTTTGTGTCGGAAGGTGACAATATAAATTGTACTCTTCCGTTTGATAATCATTGTGGAATCATTTTGTTTCACACTGTAACCTTAGGGAGGAGACATGCTTATGCCTCCATATTTTCCTCAAACTTTTTCCTCCATGTTTTCTGAATCTAGAATGGAAAATTCACAATACGTTGAATTAGTACAATCAATACAGTTCATTATATATTGGAATAATTTACACATGCCAACCTCATATTTTTGAAGAATGGGCAAATTAATAATTTTTTTTTAAAAAAATTATTATGTGGGATGTTGTTATTAAGACCCGCCACTTTTATTCACAGTGTTTAAACATTGATTTTGGGTCTATGATGCCATTTTATTATACATCTTTTGACTTGACTGTAAATAGTGACAGTTTCAGATCCACATATATTACAACTAGACAATGTGCGGCATGCTTATTTATGTTCTTTTTCCATCAGGGCATGCTATGGTGTTCTGAGATTCGTCATGGAAAGTGGAGCTAAGGGTTGCGAGGTTAGCTTGCAGCTCAATCCATTGATATCACTATGTGAAAAGTTCATGTAGGGATGTTTACATGTAATGCTTAACATGCAAACAGGTTATTGTTAGTGGAAAACTGAGGGCACAGCGTGCAAAGTCTATGAAGTTTAAAGATGGATATATGATATCTTCGGGTCAACCAGTGAGAGATTATATTGACTCAGCTGTTAGACACGTTCTTCTCAGACAGGTTAGCTTTGTAGTTATCATAAAAAACAGGTGCTTACATGTGGTATATCTGTCAGTTGGGTTGATGTTATTTCTTTTTGGGTCAGGGAGTTCTTGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCCTACCACCCCTCTTCCTGATGTTGTCGTAATCCATTCTCCCAAGGAGGAAGAAGAAATCGTCCATAGACCATCAGCAGCAGCAGCAGTTTTGACCACTGATATTGAGGTTCCAGTAGTAGTAGCAGCTTGAGAGGCTCTT

mRNA sequence

ATGGAATTTGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGATGAATTCTCGCAAGAACACCAAGATTTGATAGCCCAACTCAAAATAGAGCTAAGAAACTCAAGAACAGGAGGACTTCCAACCGTACAAGAAGAAGAAGAGGCAGGCCCAGAATATATGAGTCCTACATCAGTCGAAGTTCTTAAACCTCTCAAAAATGGTGGAAATTTTGAACACAGAACATTCAAAGAGATCCAAAAGGTCTACAAAACTTATGCTCAAAAAATGCGAAAGCTTGACGTCTCCAATACCCAGACAAATTATGCAATTGATTTTATTAAGTTGAAAGATCCATTTAGTTCAATGGATGAAAAGAAATCTGGCCTTAAATCTGTTGTGTCCCACAAGTTAAGGGCAGAGAGAGCTGTTAAGGGCTATCCAAATTTGATGAGAGACTTAAAGAGGGACATGGAAATGGTGTATGTTGGACATCTTTGCCTCTCTTGGGAAGTTCTGCATTGGCAGCATAGGAAGGCCATTGAGCTCCAACAAAACGACACTCGAGGAACCTCTCGGTACACTCGTGTCGTTAATGAATTTCAATTCTTCTGCATCCTCATTCAAAGATTCGTCGAAGACGAGCTGTTTTGCGGCCCTCGAATCAATAACTACGTGAAAAACAGACTTCTTGTTCGTAGTCTCCTTCAAGTTCCAGCCATTAGAGAGGATTGTGTAAATGACAAAAAGTTGAGAGGCAAAGAAGGTGAAAGTACCATCTCAACTGCAGCTCTAGTATCAATGATCGAAGAATCGATGTGGGTTTTTCGGGATTTTTTACGTGCTGATAAGGATGTCAGGAGTACGAAGATCAAGTGTGCTGAAGTAGAAGTTAATGCACAAGCTATGATGATGGAAATAAGAACTGAGCTGCGAAAGAAGGAGAGAAGGCTAAAGGAGATAGTGAGAGGTGGGCATTGTATAGTAAAGAAGTTGAAAAGGGTTAGTGAAGTAGAAGAAGGGAGATTGAAGAATGAATTGTTGATAGCGGAGGTTGAACTGAAATTGGTATCAAGAGTGGTGATTTGCGGCCGCGCCATTTCTTCCATCGGAACGCGGGCAGCACAAGAGTCTTCCCTTCTCTTAACTCAGCGGCTTCGTTGCTGTCTTTCCAATTTCTCTTTGAAAATGGCGACCCAGATGAGTAAGAAGAGAAAGTTCGTGGCCGATGGAGTGTTTTTCGCTGAGCTAAACGAGGTTTTGACCAGGGAGTTGGCCGAGGATGGGTACTCCGGTGTCGAGGTTAGAGTCACTCCAATGCGCACTGAGATCATCATCCGAGCAACCCGCACCCAAAACGTTCTCGGAGAAAAAGGTAGGAGGATTAGGGAACTCACCTCAGCTGTGCAGAAGCGGTTCAAGTTTCCAGAGAACAGTGTTGAGCTCTATGCCGAGAAAGTTAACAATAGAGGGCTTTGTGCTATTGCCCAAGCCGAGTCTCTCCGTTATAAGCTACTTGGTGGCCTTGCTGTGCGAAGGGCATGCTATGGTGTTCTGAGATTCGTCATGGAAAGTGGAGCTAAGGGTTGCGAGGTTATTGTTAGTGGAAAACTGAGGGCACAGCGTGCAAAGTCTATGAAGTTTAAAGATGGATATATGATATCTTCGGGTCAACCAGTGAGAGATTATATTGACTCAGCTGTTAGACACGTTCTTCTCAGACAGGGAGTTCTTGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCCTACCACCCCTCTTCCTGATGTTGTCGTAATCCATTCTCCCAAGGAGGAAGAAGAAATCGTCCATAGACCATCAGCAGCAGCAGCAGTTTTGACCACTGATATTGAGGTTCCAGTAGTAGTAGCAGCTTGAGAGGCTCTT

Coding sequence (CDS)

ATGGAATTTGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGATGAATTCTCGCAAGAACACCAAGATTTGATAGCCCAACTCAAAATAGAGCTAAGAAACTCAAGAACAGGAGGACTTCCAACCGTACAAGAAGAAGAAGAGGCAGGCCCAGAATATATGAGTCCTACATCAGTCGAAGTTCTTAAACCTCTCAAAAATGGTGGAAATTTTGAACACAGAACATTCAAAGAGATCCAAAAGGTCTACAAAACTTATGCTCAAAAAATGCGAAAGCTTGACGTCTCCAATACCCAGACAAATTATGCAATTGATTTTATTAAGTTGAAAGATCCATTTAGTTCAATGGATGAAAAGAAATCTGGCCTTAAATCTGTTGTGTCCCACAAGTTAAGGGCAGAGAGAGCTGTTAAGGGCTATCCAAATTTGATGAGAGACTTAAAGAGGGACATGGAAATGGTGTATGTTGGACATCTTTGCCTCTCTTGGGAAGTTCTGCATTGGCAGCATAGGAAGGCCATTGAGCTCCAACAAAACGACACTCGAGGAACCTCTCGGTACACTCGTGTCGTTAATGAATTTCAATTCTTCTGCATCCTCATTCAAAGATTCGTCGAAGACGAGCTGTTTTGCGGCCCTCGAATCAATAACTACGTGAAAAACAGACTTCTTGTTCGTAGTCTCCTTCAAGTTCCAGCCATTAGAGAGGATTGTGTAAATGACAAAAAGTTGAGAGGCAAAGAAGGTGAAAGTACCATCTCAACTGCAGCTCTAGTATCAATGATCGAAGAATCGATGTGGGTTTTTCGGGATTTTTTACGTGCTGATAAGGATGTCAGGAGTACGAAGATCAAGTGTGCTGAAGTAGAAGTTAATGCACAAGCTATGATGATGGAAATAAGAACTGAGCTGCGAAAGAAGGAGAGAAGGCTAAAGGAGATAGTGAGAGGTGGGCATTGTATAGTAAAGAAGTTGAAAAGGGTTAGTGAAGTAGAAGAAGGGAGATTGAAGAATGAATTGTTGATAGCGGAGGTTGAACTGAAATTGGTATCAAGAGTGGTGATTTGCGGCCGCGCCATTTCTTCCATCGGAACGCGGGCAGCACAAGAGTCTTCCCTTCTCTTAACTCAGCGGCTTCGTTGCTGTCTTTCCAATTTCTCTTTGAAAATGGCGACCCAGATGAGTAAGAAGAGAAAGTTCGTGGCCGATGGAGTGTTTTTCGCTGAGCTAAACGAGGTTTTGACCAGGGAGTTGGCCGAGGATGGGTACTCCGGTGTCGAGGTTAGAGTCACTCCAATGCGCACTGAGATCATCATCCGAGCAACCCGCACCCAAAACGTTCTCGGAGAAAAAGGTAGGAGGATTAGGGAACTCACCTCAGCTGTGCAGAAGCGGTTCAAGTTTCCAGAGAACAGTGTTGAGCTCTATGCCGAGAAAGTTAACAATAGAGGGCTTTGTGCTATTGCCCAAGCCGAGTCTCTCCGTTATAAGCTACTTGGTGGCCTTGCTGTGCGAAGGGCATGCTATGGTGTTCTGAGATTCGTCATGGAAAGTGGAGCTAAGGGTTGCGAGGTTATTGTTAGTGGAAAACTGAGGGCACAGCGTGCAAAGTCTATGAAGTTTAAAGATGGATATATGATATCTTCGGGTCAACCAGTGAGAGATTATATTGACTCAGCTGTTAGACACGTTCTTCTCAGACAGGGAGTTCTTGGTATCAAAGTTAAGATCATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCCTACCACCCCTCTTCCTGATGTTGTCGTAATCCATTCTCCCAAGGAGGAAGAAGAAATCGTCCATAGACCATCAGCAGCAGCAGCAGTTTTGACCACTGATATTGAGGTTCCAGTAGTAGTAGCAGCTTGA

Protein sequence

MEFEEEEEEEEEEEEEEEDDEFSQEHQDLIAQLKIELRNSRTGGLPTVQEEEEAGPEYMSPTSVEVLKPLKNGGNFEHRTFKEIQKVYKTYAQKMRKLDVSNTQTNYAIDFIKLKDPFSSMDEKKSGLKSVVSHKLRAERAVKGYPNLMRDLKRDMEMVYVGHLCLSWEVLHWQHRKAIELQQNDTRGTSRYTRVVNEFQFFCILIQRFVEDELFCGPRINNYVKNRLLVRSLLQVPAIREDCVNDKKLRGKEGESTISTAALVSMIEESMWVFRDFLRADKDVRSTKIKCAEVEVNAQAMMMEIRTELRKKERRLKEIVRGGHCIVKKLKRVSEVEEGRLKNELLIAEVELKLVSRVVICGRAISSIGTRAAQESSLLLTQRLRCCLSNFSLKMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPSAAAAVLTTDIEVPVVVAA

Homology

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BLAST of CmaCh05G014060 vs. ExPASy Swiss-Prot
Match: Q9M339 (40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 7.4e-110
Identity = 209/241 (86.72%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 395 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 454
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 455 EKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 514
           EKGRRIRELTS VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 515 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 574
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 575 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPS--AAAAVLTTDIEVPV 634
           VLGIKVK+MLDWDPKG  GP TPLPDVV+IHSPKEEE I + P+  AA A L  D  +  
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAI-YAPAQVAAPAALVADAPLTA 240

[Close]

BLAST of CmaCh05G014060 vs. ExPASy Swiss-Prot
Match: Q9SIP7 (40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.2e-109
Identity = 205/238 (86.13%), Postives = 220/238 (92.44%), Query Frame = 0


Query: 395 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 454
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 455 EKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 514
           EKGRRIRELTS VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 515 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 574
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 575 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPSAAAAVLTTDIEVPV 633
           VLGIKVKIMLDWDP GK GP TPLPDVV+IH+PK ++ +   P+ AAA +T   E P+
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPK-DDVVYSAPAQAAAPVTLVQEAPL 237

[Close]

BLAST of CmaCh05G014060 vs. ExPASy Swiss-Prot
Match: Q9FJA6 (40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.2e-109
Identity = 205/237 (86.50%), Postives = 220/237 (92.83%), Query Frame = 0


Query: 395 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 454
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 455 EKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 514
           EKGRRIRELTS VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 515 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 574
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 575 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPSAAAAVLTTDIEVP 632
           VLG+KVKIMLDWDPKGKQGP TPLPDVV+IH+PKE++  +    A A V+T    VP
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYI----APAQVVTQAAFVP 233

[Close]

BLAST of CmaCh05G014060 vs. ExPASy Swiss-Prot
Match: P02350 (40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2)

HSP 1 Score: 351.7 bits (901), Expect = 1.8e-95
Identity = 182/216 (84.26%), Postives = 190/216 (87.96%), Query Frame = 0


Query: 395 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 454
           MA Q+SKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLG
Sbjct: 1   MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60

Query: 455 EKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 514
           EKGRRIRELT+ VQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 515 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 574
           GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180

Query: 575 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEE 611
           VLGIKVKIML WDP GK GP  PLPD V I  PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216

[Close]

BLAST of CmaCh05G014060 vs. ExPASy Swiss-Prot
Match: P47835 (40S ribosomal protein S3-B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.8e-95
Identity = 182/216 (84.26%), Postives = 190/216 (87.96%), Query Frame = 0


Query: 395 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 454
           MA QMSKKRKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQNVLG
Sbjct: 1   MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLG 60

Query: 455 EKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 514
           EKGRRIRELT+ VQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 515 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 574
           GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV  Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180

Query: 575 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEE 611
           VLGIKVKIML WDP GK GP  PLPD V I  PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216

[Close]

BLAST of CmaCh05G014060 vs. TAIR 10
Match: AT3G53870.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 399.4 bits (1025), Expect = 5.3e-111
Identity = 209/241 (86.72%), Postives = 220/241 (91.29%), Query Frame = 0


Query: 395 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 454
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 455 EKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 514
           EKGRRIRELTS VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 515 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 574
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180

Query: 575 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPS--AAAAVLTTDIEVPV 634
           VLGIKVK+MLDWDPKG  GP TPLPDVV+IHSPKEEE I + P+  AA A L  D  +  
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAI-YAPAQVAAPAALVADAPLTA 240

[Close]

BLAST of CmaCh05G014060 vs. TAIR 10
Match: AT2G31610.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 397.9 bits (1021), Expect = 1.5e-110
Identity = 205/238 (86.13%), Postives = 220/238 (92.44%), Query Frame = 0


Query: 395 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 454
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 455 EKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 514
           EKGRRIRELTS VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 515 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 574
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 575 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPSAAAAVLTTDIEVPV 633
           VLGIKVKIMLDWDP GK GP TPLPDVV+IH+PK ++ +   P+ AAA +T   E P+
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPK-DDVVYSAPAQAAAPVTLVQEAPL 237

[Close]

BLAST of CmaCh05G014060 vs. TAIR 10
Match: AT5G35530.1 (Ribosomal protein S3 family protein )

HSP 1 Score: 397.9 bits (1021), Expect = 1.5e-110
Identity = 205/237 (86.50%), Postives = 220/237 (92.83%), Query Frame = 0


Query: 395 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 454
           MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 455 EKGRRIRELTSAVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 514
           EKGRRIRELTS VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 515 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQG 574
           GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP ++YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180

Query: 575 VLGIKVKIMLDWDPKGKQGPTTPLPDVVVIHSPKEEEEIVHRPSAAAAVLTTDIEVP 632
           VLG+KVKIMLDWDPKGKQGP TPLPDVV+IH+PKE++  +    A A V+T    VP
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYI----APAQVVTQAAFVP 233

[Close]

BLAST of CmaCh05G014060 vs. TAIR 10
Match: AT1G69610.1 (Protein of unknown function (DUF1666) )

HSP 1 Score: 216.9 bits (551), Expect = 4.8e-56
Identity = 163/378 (43.12%), Postives = 231/378 (61.11%), Query Frame = 0


Query: 1   MEFEEEEE--EEEEEEEEEEDDEFSQEHQDLIAQLKIELRNSRTGGLPTVQEEEEAGPEY 60
           M F+E+EE  +E ++  + +DDEF  EH D+I +LK ELR +RTGGL T+ EE E     
Sbjct: 238 MGFDEQEEVYDEFDDGSDSDDDEF--EHSDVIEKLKTELRTARTGGLCTILEESE----- 297

Query: 61  MSPTSVEVLKPLK-NGGNFEHR-TFKEIQKVYKTYAQKMRKLDVSNTQTNYAIDFIKLKD 120
              T ++ LKPLK      +H+    EI KVYK YA KMRKLDV ++QT ++I  +KLKD
Sbjct: 298 ---TPLQELKPLKIEPKPDQHKDRIAEIHKVYKNYAVKMRKLDVIDSQTMHSISLLKLKD 357

Query: 121 ---PFSSMDE-KKSGLKSVV----SHKLRAERAVKGYPNLMRDLKRDMEMVYVGHLCLSW 180
              P  + D+  KS L   +     H L  + + +    L+++  RD E VYVG +CLSW
Sbjct: 358 SSKPSRNTDKPPKSSLHQNIWPFKKHTLECDPSER----LVKEASRDFETVYVGQVCLSW 417

Query: 181 EVLHWQHRKAIELQQNDTRGTSRYTRVVNEFQFFCILIQRFVEDELF-CGPRINNYVKNR 240
           E+L WQ+ K +E     T  T +Y  V  EFQ F +L+QRFVE+E F    R+  Y+KNR
Sbjct: 418 EMLRWQYDKVLEFDSQVT--TYQYNLVAGEFQLFQVLLQRFVENEPFQNSSRVETYLKNR 477

Query: 241 LLVRSLLQVPAIREDCVNDKKLRGKEGESTISTAALVSMIEESMWVFRDFLRADKDVRST 300
              ++ LQ+P +R+D  + KK R  EGE  + T  L  +I ESM VF +FL ADKD  ++
Sbjct: 478 RHFQNFLQIPLVRDDRSSKKKCR-YEGEFAVKTEMLREIIRESMSVFWEFLCADKDEFTS 537

Query: 301 KIKCA-EVEVNAQ-----AMMMEIRTELRKKERRLKEIVRGGHCIVKKLKRVSEVEEGRL 360
            +K + + +V+ Q      ++ +IRT L+KKE++LKEI R   CIVKKLK+        +
Sbjct: 538 MMKVSHQTQVSPQDSLDLELLTDIRTHLQKKEKKLKEIQRSQSCIVKKLKKNESKSSIGV 597

[Close]

BLAST of CmaCh05G014060 vs. TAIR 10
Match: AT5G39785.1 (Protein of unknown function (DUF1666) )

HSP 1 Score: 199.9 bits (507), Expect = 6.1e-51
Identity = 135/380 (35.53%), Postives = 225/380 (59.21%), Query Frame = 0


Query: 8   EEEEEEEEEEEDDEFSQEHQDLIAQLKIELRNSRT-GGLPTVQEEEEAGPEYMSPTSVEV 67
           + EEEEEE+    E   EHQDLI QLK+E++  +  GGL T+ EEEE   +   P  +E 
Sbjct: 191 DSEEEEEEDTNGFESLWEHQDLIEQLKMEMKKVKAIGGLTTILEEEEEDDD--CPKIMED 250

Query: 68  LKP--LKNGGNFEH-RTFKEIQKVYKTYAQKMRKLDVSNTQTNYAIDFIKLKDPFSS--- 127
           LKP  ++    F+H  T  E+ K +++Y ++MRKLD+ + Q +YA+  ++ K P  +   
Sbjct: 251 LKPWRIEEEKKFKHVDTIGEVHKFHRSYRERMRKLDILSFQKSYALGLLQSKSPQQATST 310

Query: 128 --MDEKKSGLKSVVSHKLRAERAVKG----YPNLMRDLKRDMEMVYVGHLCLSWEVLHWQ 187
              +  ++   SV S  +R  +A K         +++++ ++E VYVG +CLSWE+LHWQ
Sbjct: 311 LGSNPSQTSFSSVFSVNIRLWKAKKSEIEPMVQFVKEIQGELENVYVGQMCLSWEILHWQ 370

Query: 188 HRKAIELQQNDTRGTSRYTRVVNEFQFFCILIQRFVEDELFCGPRINNYVKNRLLVRSLL 247
           + KAIEL ++D  G+ RY  V  EFQ F +L+QRF+E+E F  PR+ +Y+K R ++R+LL
Sbjct: 371 YEKAIELLESDVYGSRRYNEVAGEFQQFQVLLQRFLENEPFEEPRVQHYIKRRCVLRNLL 430

Query: 248 QVPAIREDCVNDKKLRGK-----EGESTISTAALVSMIEESMWVFRDFLRADK------D 307
           Q+P IRED   DKK   +       +  I +  LV ++EE++ +F  F+R DK      D
Sbjct: 431 QIPVIREDGNKDKKNGRRRDYEENNDGVIKSDQLVEIMEETIRLFWRFVRCDKLTSSIHD 490

Query: 308 VRS-TKIKCA---EVEVNAQAMMMEIRTELRKKERRLKEIVRGGHCIVKKLKRVSEVEEG 360
            +S TK +     E +     M  E++++L+ KE+RL+++++   CI+++ ++  E +  
Sbjct: 491 QKSRTKSQIEPDHEEDSEDLEMFAEVKSQLQNKEKRLRDVLKSERCIIRRFQKHKEEDST 550

The following BLAST results are available for this feature:

BLAST of CmaCh05G014060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M339	7.4e-110	86.72	40S ribosomal protein S3-2 OS=Arabidopsis thaliana OX=3702 GN=RPS3B PE=1 SV=1	[more]
Q9SIP7	2.2e-109	86.13	40S ribosomal protein S3-1 OS=Arabidopsis thaliana OX=3702 GN=RPS3A PE=1 SV=1	[more]
Q9FJA6	2.2e-109	86.50	40S ribosomal protein S3-3 OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1	[more]
P02350	1.8e-95	84.26	40S ribosomal protein S3-A OS=Xenopus laevis OX=8355 GN=rps3-a PE=2 SV=2	[more]
P47835	1.8e-95	84.26	40S ribosomal protein S3-B OS=Xenopus laevis OX=8355 GN=rps3-b PE=2 SV=1	[more]

BLAST of CmaCh05G014060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53870.1	5.3e-111	86.72	Ribosomal protein S3 family protein	[more]
AT2G31610.1	1.5e-110	86.13	Ribosomal protein S3 family protein	[more]
AT5G35530.1	1.5e-110	86.50	Ribosomal protein S3 family protein	[more]
AT1G69610.1	4.8e-56	43.12	Protein of unknown function (DUF1666)	[more]
AT5G39785.1	6.1e-51	35.53	Protein of unknown function (DUF1666)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR11760:SF52	40S RIBOSOMAL PROTEIN S3-RELATED	coord: 397..629
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 397..629
None	No IPR available	CDD	cd02413	40S_S3_KH	coord: 409..489 e-value: 6.40485E-47 score: 157.769
IPR012870	Protein of unknown function DUF1666	PFAM	PF07891	DUF1666	coord: 154..359 e-value: 3.4E-59 score: 200.5
IPR004044	K Homology domain, type 2	PFAM	PF07650	KH_2	coord: 414..487 e-value: 1.3E-12 score: 47.4
IPR004044	K Homology domain, type 2	PROSITE	PS50823	KH_TYPE_2	coord: 415..486 score: 11.598653
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 392..485 e-value: 8.8E-48 score: 162.2
IPR001351	Ribosomal protein S3, C-terminal	PFAM	PF00189	Ribosomal_S3_C	coord: 500..582 e-value: 1.2E-24 score: 86.6
IPR005703	Ribosomal protein S3, eukaryotic/archaeal	TIGRFAM	TIGR01008	TIGR01008	coord: 402..604 e-value: 1.6E-69 score: 231.6
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	GENE3D	3.30.1140.32		coord: 487..613 e-value: 3.1E-65 score: 219.9
IPR036419	Ribosomal protein S3, C-terminal domain superfamily	SUPERFAMILY	54821	Ribosomal protein S3 C-terminal domain	coord: 487..585
IPR018280	Ribosomal protein S3, conserved site	PROSITE	PS00548	RIBOSOMAL_S3	coord: 541..577
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 404..493

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G014060.1	CmaCh05G014060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome