CmaCh05G013770 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G013770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionleucine-rich repeat extensin-like protein 4
LocationCma_Chr05: 10340590 .. 10341798 (-)
RNA-Seq ExpressionCmaCh05G013770
SyntenyCmaCh05G013770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGTTGGGTTTTTTTCTGTCTGTTATTAAGTGGTCTAGTTCTCCCCACCCGAGCCATTGTTGGAGTCGGCGGCGGAGTTCGTTTTGGCTTTGGCGGTGGCGGAGGAGGTATTTGGGTTGGCGGAGGAGGAAACACTCCGACTCCGACTCCAAATCCATTGTTAGGGACTCAACTAAACAGAGCATACTCTGTTCTTCAGACATGGAAATCTGCCATTTCCGACGACCCCACCGGAATTTTAACCACATGGGTCGGCTCAGATGTATGTTCTTACCAAGGAATCTTCTGTACAAATCATAGTTCCGGCCAAATATCCGTCACCGGAATCGACCTCAACGGCAAGAATCTCAGAGGAAACCTCATCAAGGATCTGGCCTTTCTCACCGATCTGACGCTTATTCACTTAAACAGTAACAGATTTTCCGGTACGATACCGGTGAGTTTCCGGCAACTCCAATTTCTTCAAGAACTGGATCTCAGCAACAACAACTTCTCCGGCGAGTTCCCCGCCGTCACTCTCTACATTCCGAATCTCAAGTATTTAGATCTAAGATTCAACTCCTTCACCGGCCCAATCCCGGAAGAATTGTTCTTCAAGGAACTAGACGCCATTTTCATAAACGACAATCAATTCACCGGCGAAATCCCCCAAAACCTGGGGAATTCACCGGCGTCTGTGATAAATCTGGCGAATAATCACTTTGTCGGAGCAATTCCGGCGAGTTTTGGGTATATGGGTCCGAGATTGAAGGAAATTCTGTTCCTAAACAACCAATTAACCGGTTGTATTCCAGTAGGAGTTGGGTTTTTGACAGAAATTGAAGTCTTGGATTTCAGTTCCAACAAATTGTTCGGTCATCTTCCTGATACAATCTCTTGCATGAACCAAGTTGAGATTTTGAATCTAGCCCACAACGAGCTATCCGGCGTCGTTTCGGATTTGGTCTGTTCCTTGAGAAGCCTCGTGAATCTGTCCGTAGCGGATAATTTCTTCTCCGGCTTCAACCAGCAGTGTCGGAACCTGTTCGGTGGGTTGGATTTGTCGTTCAATTGCATTCCGGGGGTGGGTCTGCAGCGGCCGTCGCCGGAATGTTCTGTAATTCCGGGAATTGGGTTGAGTTGCCTCCGGGTTCCTGGACTTCCACGGCCGTTGGTTTGTGGGCGGCTCGTTGAAACGCCGGCGGCGGAAGCGGCGGCCCCGTGA

mRNA sequence

ATGGAGGGTTGGGTTTTTTTCTGTCTGTTATTAAGTGGTCTAGTTCTCCCCACCCGAGCCATTGTTGGAGTCGGCGGCGGAGTTCGTTTTGGCTTTGGCGGTGGCGGAGGAGGTATTTGGGTTGGCGGAGGAGGAAACACTCCGACTCCGACTCCAAATCCATTGTTAGGGACTCAACTAAACAGAGCATACTCTGTTCTTCAGACATGGAAATCTGCCATTTCCGACGACCCCACCGGAATTTTAACCACATGGGTCGGCTCAGATGTATGTTCTTACCAAGGAATCTTCTGTACAAATCATAGTTCCGGCCAAATATCCGTCACCGGAATCGACCTCAACGGCAAGAATCTCAGAGGAAACCTCATCAAGGATCTGGCCTTTCTCACCGATCTGACGCTTATTCACTTAAACAGTAACAGATTTTCCGGTACGATACCGGTGAGTTTCCGGCAACTCCAATTTCTTCAAGAACTGGATCTCAGCAACAACAACTTCTCCGGCGAGTTCCCCGCCGTCACTCTCTACATTCCGAATCTCAAGTATTTAGATCTAAGATTCAACTCCTTCACCGGCCCAATCCCGGAAGAATTGTTCTTCAAGGAACTAGACGCCATTTTCATAAACGACAATCAATTCACCGGCGAAATCCCCCAAAACCTGGGGAATTCACCGGCGTCTGTGATAAATCTGGCGAATAATCACTTTGTCGGAGCAATTCCGGCGAGTTTTGGGTATATGGGTCCGAGATTGAAGGAAATTCTGTTCCTAAACAACCAATTAACCGGTTGTATTCCAGTAGGAGTTGGGTTTTTGACAGAAATTGAAGTCTTGGATTTCAGTTCCAACAAATTGTTCGGTCATCTTCCTGATACAATCTCTTGCATGAACCAAGTTGAGATTTTGAATCTAGCCCACAACGAGCTATCCGGCGTCGTTTCGGATTTGGTCTGTTCCTTGAGAAGCCTCGTGAATCTGTCCGTAGCGGATAATTTCTTCTCCGGCTTCAACCAGCAGTGTCGGAACCTGTTCGGTGGGTTGGATTTGTCGTTCAATTGCATTCCGGGGGTGGGTCTGCAGCGGCCGTCGCCGGAATGTTCTGTAATTCCGGGAATTGGGTTGAGTTGCCTCCGGGTTCCTGGACTTCCACGGCCGTTGGTTTGTGGGCGGCTCGTTGAAACGCCGGCGGCGGAAGCGGCGGCCCCGTGA

Coding sequence (CDS)

ATGGAGGGTTGGGTTTTTTTCTGTCTGTTATTAAGTGGTCTAGTTCTCCCCACCCGAGCCATTGTTGGAGTCGGCGGCGGAGTTCGTTTTGGCTTTGGCGGTGGCGGAGGAGGTATTTGGGTTGGCGGAGGAGGAAACACTCCGACTCCGACTCCAAATCCATTGTTAGGGACTCAACTAAACAGAGCATACTCTGTTCTTCAGACATGGAAATCTGCCATTTCCGACGACCCCACCGGAATTTTAACCACATGGGTCGGCTCAGATGTATGTTCTTACCAAGGAATCTTCTGTACAAATCATAGTTCCGGCCAAATATCCGTCACCGGAATCGACCTCAACGGCAAGAATCTCAGAGGAAACCTCATCAAGGATCTGGCCTTTCTCACCGATCTGACGCTTATTCACTTAAACAGTAACAGATTTTCCGGTACGATACCGGTGAGTTTCCGGCAACTCCAATTTCTTCAAGAACTGGATCTCAGCAACAACAACTTCTCCGGCGAGTTCCCCGCCGTCACTCTCTACATTCCGAATCTCAAGTATTTAGATCTAAGATTCAACTCCTTCACCGGCCCAATCCCGGAAGAATTGTTCTTCAAGGAACTAGACGCCATTTTCATAAACGACAATCAATTCACCGGCGAAATCCCCCAAAACCTGGGGAATTCACCGGCGTCTGTGATAAATCTGGCGAATAATCACTTTGTCGGAGCAATTCCGGCGAGTTTTGGGTATATGGGTCCGAGATTGAAGGAAATTCTGTTCCTAAACAACCAATTAACCGGTTGTATTCCAGTAGGAGTTGGGTTTTTGACAGAAATTGAAGTCTTGGATTTCAGTTCCAACAAATTGTTCGGTCATCTTCCTGATACAATCTCTTGCATGAACCAAGTTGAGATTTTGAATCTAGCCCACAACGAGCTATCCGGCGTCGTTTCGGATTTGGTCTGTTCCTTGAGAAGCCTCGTGAATCTGTCCGTAGCGGATAATTTCTTCTCCGGCTTCAACCAGCAGTGTCGGAACCTGTTCGGTGGGTTGGATTTGTCGTTCAATTGCATTCCGGGGGTGGGTCTGCAGCGGCCGTCGCCGGAATGTTCTGTAATTCCGGGAATTGGGTTGAGTTGCCTCCGGGTTCCTGGACTTCCACGGCCGTTGGTTTGTGGGCGGCTCGTTGAAACGCCGGCGGCGGAAGCGGCGGCCCCGTGA

Protein sequence

MEGWVFFCLLLSGLVLPTRAIVGVGGGVRFGFGGGGGGIWVGGGGNTPTPTPNPLLGTQLNRAYSVLQTWKSAISDDPTGILTTWVGSDVCSYQGIFCTNHSSGQISVTGIDLNGKNLRGNLIKDLAFLTDLTLIHLNSNRFSGTIPVSFRQLQFLQELDLSNNNFSGEFPAVTLYIPNLKYLDLRFNSFTGPIPEELFFKELDAIFINDNQFTGEIPQNLGNSPASVINLANNHFVGAIPASFGYMGPRLKEILFLNNQLTGCIPVGVGFLTEIEVLDFSSNKLFGHLPDTISCMNQVEILNLAHNELSGVVSDLVCSLRSLVNLSVADNFFSGFNQQCRNLFGGLDLSFNCIPGVGLQRPSPECSVIPGIGLSCLRVPGLPRPLVCGRLVETPAAEAAAP
Homology
BLAST of CmaCh05G013770 vs. ExPASy Swiss-Prot
Match: Q9LHF1 (Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=LRX4 PE=1 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.1e-82
Identity = 170/369 (46.07%), Postives = 219/369 (59.35%), Query Frame = 0

Query: 42  GGGGNTPTPTPNPLL-GTQLNRAYSVLQTWKSAISDDPTGILTTWVGSDVCSYQGIFCTN 101
           G  G   T  P+ +    +L  AY  LQ WK AI  DP  I   W+GS+VC+Y G+FC+ 
Sbjct: 55  GDRGENVTVDPSLIFENPRLRSAYIALQAWKQAILSDPNNITVNWIGSNVCNYTGVFCSK 114

Query: 102 HSSGQ--ISVTGIDLNGKNLRGNLIKDLAFLTDLTLIHLNSNRFSGTIPVSFRQLQFLQE 161
               +   +V GIDLN  ++ G L ++L  LTDL L H+NSNRF GT+P  F+QL+ L E
Sbjct: 115 ALDNRKIRTVAGIDLNHADIAGYLPEELGLLTDLALFHVNSNRFCGTVPHKFKQLKLLFE 174

Query: 162 LDLSNNNFSGEFPAVTLYIPNLKYLDLRFNSFTGPIPEELFFKELDAIFINDNQFTGEIP 221
           LDLSNN F+G+FP V L++P+LK+LDLRFN F G +P+ELF K LDAIFIN N+F  E+P
Sbjct: 175 LDLSNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNRFRFELP 234

Query: 222 QNLGNSPASVINLANNHFVGAIPASFGYMGPRLKEILFLNNQLTGCIPVGVGFLTEIEVL 281
           +N G+SP SVI LANNHF G IP S   M   L EI+F+NN L  C+P  +G L  + V 
Sbjct: 235 ENFGDSPVSVIVLANNHFHGCIPTSLVEM-KNLNEIIFMNNGLNSCLPADIGRLKNVTVF 294

Query: 282 DFSSNKLFGHLPDTISCMNQVEILNLAHNELSGVVSDLVCSLRSLVNLSVADNFFSGFNQ 341
           D S N+L G LP+++  M +VE LN+AHN LSG +   +C L  L N + + NFF+G   
Sbjct: 295 DVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTYSYNFFTGEAP 354

Query: 342 QCRNLFGGLDLSFNCIPGVGLQRPSPECSVIPGIGLSCLRVPGLPRPLV------CGRLV 401
            C  L    D   NC+PG   QR S +CS              L RP V      CGR V
Sbjct: 355 VCLRL-SEFDDRRNCLPGRPAQRSSRQCSAF------------LSRPSVDCGSFGCGRSV 409

BLAST of CmaCh05G013770 vs. ExPASy Swiss-Prot
Match: O48809 (Leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=LRX2 PE=1 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.2e-81
Identity = 155/322 (48.14%), Postives = 201/322 (62.42%), Query Frame = 0

Query: 60  LNRAYSVLQTWKSAISDDPTGILTTWVGSDVCSYQGIFCTNHSSGQIS--VTGIDLNGKN 119
           L +AY  LQ+WK AI  DP      W GSDVCSY GIFC    S   +  V GIDLN  +
Sbjct: 53  LRQAYIALQSWKQAIFSDPFNFTANWNGSDVCSYNGIFCAPSPSSPKTRVVAGIDLNHAD 112

Query: 120 LRGNLIKDLAFLTDLTLIHLNSNRFSGTIPVSFRQLQFLQELDLSNNNFSGEFPAVTLYI 179
           + G L ++L  LTDL L HLNSNRF G +P++F+ ++ L ELDLSNN F G+FP V L +
Sbjct: 113 MAGYLPRELGLLTDLALFHLNSNRFCGEVPLTFKHMKLLFELDLSNNRFVGKFPNVVLSL 172

Query: 180 PNLKYLDLRFNSFTGPIPEELFFKELDAIFINDNQFTGEIPQNLGNSPASVINLANNHFV 239
           P+LK+LDLR+N F G IP +LF KELDAIF+N N+F   IP+N+GNSP S + LA+N   
Sbjct: 173 PSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENMGNSPVSALVLADNDLG 232

Query: 240 GAIPASFGYMGPRLKEILFLNNQLTGCIPVGVGFLTEIEVLDFSSNKLFGHLPDTISCMN 299
           G IP S G MG  L EI+  N+ LTGC+P  +G L  + V D S N+L G LP +I  M 
Sbjct: 233 GCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMK 292

Query: 300 QVEILNLAHNELSGVVSDLVCSLRSLVNLSVADNFFSGFNQQCRNLFGG---LDLSFNCI 359
            +E LN+A+N  +GV+   +C L +L N + + NFF+G   +C  L G    ++ S NCI
Sbjct: 293 SLEQLNVANNRFTGVIPSSICQLSNLENFTYSSNFFTGDAPRCVALLGDNVVVNGSMNCI 352

Query: 360 PGVGLQRPSPECSVIPGIGLSC 377
            G   QR S ECS      + C
Sbjct: 353 DGKEDQRSSKECSSPASRSVDC 374

BLAST of CmaCh05G013770 vs. ExPASy Swiss-Prot
Match: Q9SN46 (Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=LRX5 PE=2 SV=2)

HSP 1 Score: 304.7 bits (779), Expect = 1.6e-81
Identity = 154/316 (48.73%), Postives = 197/316 (62.34%), Query Frame = 0

Query: 59  QLNRAYSVLQTWKSAISDDPTGILTTWVGSDVCSYQGIFCTNHSSGQ--ISVTGIDLNGK 118
           +L  AY  LQ WK AI  DP    T W+GSDVCSY G++C      +   +V GIDLN  
Sbjct: 77  RLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCSYTGVYCAPALDNRRIRTVAGIDLNHA 136

Query: 119 NLRGNLIKDLAFLTDLTLIHLNSNRFSGTIPVSFRQLQFLQELDLSNNNFSGEFPAVTLY 178
           ++ G L ++L  LTDL L H+NSNRF GT+P  F +L+ L ELDLSNN F+G FP V L 
Sbjct: 137 DIAGYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQ 196

Query: 179 IPNLKYLDLRFNSFTGPIPEELFFKELDAIFINDNQFTGEIPQNLGNSPASVINLANNHF 238
           +P+LK+LDLRFN F GP+P ELF K+LDAIFIN N+F  E+P NLG+SP SVI +ANNHF
Sbjct: 197 LPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNLGDSPVSVIVVANNHF 256

Query: 239 VGAIPASFGYMGPRLKEILFLNNQLTGCIPVGVGFLTEIEVLDFSSNKLFGHLPDTISCM 298
            G IP S G M   L+EI+F+ N    C+P  +G L  + V DFS N+L G LP +I  M
Sbjct: 257 HGCIPTSLGDM-RNLEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGM 316

Query: 299 NQVEILNLAHNELSGVVSDLVCSLRSLVNLSVADNFFSGFNQQCRNLFGGLDLSFNCIPG 358
             +E LN+AHN  SG +   +C L  L N + + NFF+G    C  L  G D   NC+P 
Sbjct: 317 VSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLGL-PGFDDRRNCLPA 376

Query: 359 VGLQRPSPECSVIPGI 373
              QR   +C+    +
Sbjct: 377 RPAQRSPGQCAAFSSL 390

BLAST of CmaCh05G013770 vs. ExPASy Swiss-Prot
Match: Q4PSE6 (Leucine-rich repeat extensin-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=LRX7 PE=2 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 3.0e-80
Identity = 152/346 (43.93%), Postives = 207/346 (59.83%), Query Frame = 0

Query: 59  QLNRAYSVLQTWKSAISDDPTGILTTWVGSDVCSYQGIFCTNHSSGQI--SVTGIDLNGK 118
           +L RAY  LQ WK A+  DP  + T W GS VC Y G+ C+      +  +V+G+DLN  
Sbjct: 50  RLERAYVALQAWKRAMISDPWNLTTNWFGSRVCDYNGVVCSESLDDPLVKTVSGVDLNQG 109

Query: 119 NLRGNLIKDLAFLTDLTLIHLNSNRFSGTIPVSFRQLQFLQELDLSNNNFSGEFPAVTLY 178
           ++ G+L ++L  LTD+ L H+NSNRF GT+PV F QL  L ELDLSNN F+G+FP V + 
Sbjct: 110 DIAGHLPEELGLLTDIALFHVNSNRFCGTLPVGFSQLSLLFELDLSNNRFAGKFPEVVIG 169

Query: 179 IPNLKYLDLRFNSFTGPIPEELFFKELDAIFINDNQFTGEIPQNLGNSPASVINLANNHF 238
           +P LKYLDLR+N F G +PE LF K+LDA+F+N N+F  +IP N+GNSP SV+ LA+N F
Sbjct: 170 LPKLKYLDLRYNEFEGELPESLFDKDLDALFLNSNRFRSKIPVNMGNSPVSVLVLASNRF 229

Query: 239 VGAIPASFGYMGPRLKEILFLNNQLTGCIPVGVGFLTEIEVLDFSSNKLFGHLPDTISCM 298
            G IP SFG MG  L EI+ ++N L  CIP  +G L  + VLD S N L G LP ++  M
Sbjct: 230 EGCIPPSFGKMGKTLNEIILMDNGLQSCIPNDMGLLQNVTVLDISYNWLVGELPKSMGQM 289

Query: 299 NQVEILNLAHNELSGVVSDLVCSLRSLVNLSVADNFFSGFNQQCRNLFGGLDLSFNCIPG 358
             +E+LN+  N LSG++ D +CSL  L +     N+F+G    CR L    + + NC   
Sbjct: 290 ENLEVLNVERNMLSGLIPDELCSLEKLRDFRYGSNYFTGEPATCRYL-ENYNYTMNCFKD 349

Query: 359 VGLQRPSPECSVIPGIGLSCLRVPGLPRPLVCGRLVETPAAEAAAP 403
           V  QR   EC +             L +P+ C     +P +   +P
Sbjct: 350 VRDQRSMMECKMF------------LSKPVDCDSFKCSPGSSCFSP 382

BLAST of CmaCh05G013770 vs. ExPASy Swiss-Prot
Match: Q9T0K5 (Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=LRX3 PE=1 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.2e-78
Identity = 149/310 (48.06%), Postives = 198/310 (63.87%), Query Frame = 0

Query: 59  QLNRAYSVLQTWKSAISDDPTGILTTWVGSDVCSYQGIFCTNHSSGQ--ISVTGIDLNGK 118
           +L  AY  LQ WK AI  DP    + W+GS+VC+Y G+FC+     +   +V GIDLN  
Sbjct: 65  RLRNAYIALQAWKQAILSDPNNFTSNWIGSNVCNYTGVFCSPALDNRKIRTVAGIDLNHA 124

Query: 119 NLRGNLIKDLAFLTDLTLIHLNSNRFSGTIPVSFRQLQFLQELDLSNNNFSGEFPAVTLY 178
           ++ G L ++L  L+DL L H+NSNRF GT+P  F +L+ L ELDLSNN F+G+FP V L 
Sbjct: 125 DIAGYLPEELGLLSDLALFHVNSNRFCGTVPHRFNRLKLLFELDLSNNRFAGKFPTVVLQ 184

Query: 179 IPNLKYLDLRFNSFTGPIPEELFFKELDAIFINDNQFTGEIPQNLGNSPASVINLANNHF 238
           +P+LK+LDLRFN F G +P+ELF K+LDAIFIN N+F  E+P+N G+SP SVI LANN F
Sbjct: 185 LPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENFGDSPVSVIVLANNRF 244

Query: 239 VGAIPASFGYMGPRLKEILFLNNQLTGCIPVGVGFLTEIEVLDFSSNKLFGHLPDTISCM 298
            G +P+S   M   L EI+F+NN L  C+P  +G L  + V D S N+L G LP+++  M
Sbjct: 245 HGCVPSSLVEM-KNLNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEM 304

Query: 299 NQVEILNLAHNELSGVVSDLVCSLRSLVNLSVADNFFSGFNQQCRNLFGGLDLSFNCIPG 358
             VE LN+AHN LSG +   +C L  L N + + NFF+G    C  L    D   NC+PG
Sbjct: 305 VSVEQLNVAHNMLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRL-PEFDDRRNCLPG 364

Query: 359 VGLQRPSPEC 367
              QR   +C
Sbjct: 365 RPAQRSPGQC 372

BLAST of CmaCh05G013770 vs. TAIR 10
Match: AT2G19780.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 464.9 bits (1195), Expect = 6.5e-131
Identity = 229/383 (59.79%), Postives = 281/383 (73.37%), Query Frame = 0

Query: 9   LLLSGLVLPTRAIVGVGGGVRFGFGGGGGGIWVGGGGNTPTPTPNPLLGTQLNRAYSVLQ 68
           L L+ L+L     +GVG G+  G  G  GG+W+GGG     P   P      N AY+ LQ
Sbjct: 18  LFLNCLILTNGYSIGVGVGIG-GGDGDDGGVWIGGGNPNSNPGSAPNQQQTTNAAYNALQ 77

Query: 69  TWKSAISDDPTGILTTWVGSDVCSYQGIFCTNHSSGQISVTGIDLNGKNLRGNLIKDLAF 128
           +WKSAI++DP+G+L TWVG DVCSY+G+FC+       S+T IDLN  NL+G ++KDL+ 
Sbjct: 78  SWKSAITEDPSGVLKTWVGEDVCSYRGVFCSGS-----SITSIDLNKANLKGTIVKDLSL 137

Query: 129 LTDLTLIHLNSNRFSGTIPVSFRQLQFLQELDLSNNNFSGEFPAVTLYIPNLKYLDLRFN 188
           L+DLT++HLNSNRFSG IP SF+ L  LQELDLSNN FSG FP VTLYIPNL YLDLRFN
Sbjct: 138 LSDLTILHLNSNRFSGQIPDSFKNLDSLQELDLSNNRFSGSFPQVTLYIPNLVYLDLRFN 197

Query: 189 SFTGPIPEELFFKELDAIFINDNQFTGEIPQNLGNSPASVINLANNHFVGAIPASFGYMG 248
           +FTG IPE LF K+LDAI +N+NQFTGEIP NLG S ASVINLANN   G IP SFG  G
Sbjct: 198 NFTGSIPENLFNKQLDAILLNNNQFTGEIPGNLGYSTASVINLANNKLSGEIPTSFGITG 257

Query: 249 PRLKEILFLNNQLTGCIPVGVGFLTEIEVLDFSSNKLFGHLPDTISCMNQVEILNLAHNE 308
            +LKE+LFLNNQLTGCIP  VG  ++IEV D S N L GH+PDTISC++++E+LNL HN+
Sbjct: 258 SKLKEVLFLNNQLTGCIPESVGLFSDIEVFDVSFNSLMGHVPDTISCLSEIEVLNLGHNK 317

Query: 309 LSGVVSDLVCSLRSLVNLSVADNFFSGFNQQCRNLFGGLDLSFNCIPGVGLQRPSPECSV 368
            SG + DLVC+LR+L+NL+V+ NFFSGF+ QC +L  G D + NCIPG G QRP P+CS 
Sbjct: 318 FSGDLPDLVCTLRNLINLTVSFNFFSGFSSQCSSLSVGFDFTGNCIPGKGYQRPQPDCSA 377

Query: 369 IPGIGLSCLRVPGLPRPLVCGRL 392
           IPG  LSC R+P   +PL C  +
Sbjct: 378 IPGGQLSCFRIPA--QPLTCAAI 392

BLAST of CmaCh05G013770 vs. TAIR 10
Match: AT4G29240.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 458.4 bits (1178), Expect = 6.0e-129
Identity = 245/392 (62.50%), Postives = 284/392 (72.45%), Query Frame = 0

Query: 7   FCLLLSGLVLPTRAIVGVGGGVRFGF----GGGGGGIWVGGGGNTPTPTPNPLLGTQL-N 66
           F L L GLV  T A  GVGGGV  G     GGGGGG+WVGGG N      N + G+   N
Sbjct: 16  FFLFLGGLV-QTDASFGVGGGVGVGIGGGGGGGGGGVWVGGGYNN-GGNRNAVPGSSAPN 75

Query: 67  R-AYSVLQTWKSAISDDPTGILTTWVGSDVCSYQGIFCTNHSSGQISVTGIDLNGKNLRG 126
           R AY+ LQ WKSA+ +DP+ +L TWVGSDVCSY+G+FC    SGQ S+T IDLN  NL+G
Sbjct: 76  RVAYNALQVWKSAMREDPSNVLKTWVGSDVCSYKGVFC----SGQ-SITSIDLNHANLKG 135

Query: 127 NLIKDLAFLTDLTLIHLNSNRFSGTIPVSFRQLQFLQELDLSNNNFSGEFPAVTLYIPNL 186
            L+KDLA L+DL ++HLNSNRFSG IP SF+ L  LQELDLSNN  SG FP VTLYIPNL
Sbjct: 136 TLVKDLALLSDLNILHLNSNRFSGQIPDSFKSLASLQELDLSNNKLSGPFPLVTLYIPNL 195

Query: 187 KYLDLRFNSFTGPIPEELFFKELDAIFINDNQFTGEIPQNLGNSPASVINLANNHFVGAI 246
            YLDLRFNS TG IPEELF K LDAI +N+NQF GEIP+NLGNSPASVINLANN F G I
Sbjct: 196 VYLDLRFNSLTGFIPEELFNKRLDAILLNNNQFVGEIPRNLGNSPASVINLANNRFSGEI 255

Query: 247 PASFGYMGPRLKEILFLNNQLTGCIPVGVGFLTEIEVLDFSSNKLFGHLPDTISCMNQVE 306
           P SFG  G R+KE+L LNNQLTGCIP  VG  +EIEV D S N L GH+PDTISC++ +E
Sbjct: 256 PTSFGLTGSRVKEVLLLNNQLTGCIPESVGMFSEIEVFDVSYNALMGHVPDTISCLSAIE 315

Query: 307 ILNLAHNELSGVVSDLVCSLRSLVNLSVADNFFSGFNQQCRNLFG-GLDLSFNCIPGVGL 366
           ILNLAHN+ SG V DLVCSLR+L+NL+VA NFFSGF+ +C +    G D   NCIPG   
Sbjct: 316 ILNLAHNKFSGEVPDLVCSLRNLINLTVAFNFFSGFSSECSSRVSFGFDFVGNCIPGRNS 375

Query: 367 QRPSPECSVIPGIGLSCLRVPGLPRPLVCGRL 392
           QRP P+CS   G  +SC R+P   +PL C  +
Sbjct: 376 QRPQPDCSGYSGGAMSCFRIP--TQPLACAAI 398

BLAST of CmaCh05G013770 vs. TAIR 10
Match: AT3G24480.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 308.5 bits (789), Expect = 7.7e-84
Identity = 170/369 (46.07%), Postives = 219/369 (59.35%), Query Frame = 0

Query: 42  GGGGNTPTPTPNPLL-GTQLNRAYSVLQTWKSAISDDPTGILTTWVGSDVCSYQGIFCTN 101
           G  G   T  P+ +    +L  AY  LQ WK AI  DP  I   W+GS+VC+Y G+FC+ 
Sbjct: 55  GDRGENVTVDPSLIFENPRLRSAYIALQAWKQAILSDPNNITVNWIGSNVCNYTGVFCSK 114

Query: 102 HSSGQ--ISVTGIDLNGKNLRGNLIKDLAFLTDLTLIHLNSNRFSGTIPVSFRQLQFLQE 161
               +   +V GIDLN  ++ G L ++L  LTDL L H+NSNRF GT+P  F+QL+ L E
Sbjct: 115 ALDNRKIRTVAGIDLNHADIAGYLPEELGLLTDLALFHVNSNRFCGTVPHKFKQLKLLFE 174

Query: 162 LDLSNNNFSGEFPAVTLYIPNLKYLDLRFNSFTGPIPEELFFKELDAIFINDNQFTGEIP 221
           LDLSNN F+G+FP V L++P+LK+LDLRFN F G +P+ELF K LDAIFIN N+F  E+P
Sbjct: 175 LDLSNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHNRFRFELP 234

Query: 222 QNLGNSPASVINLANNHFVGAIPASFGYMGPRLKEILFLNNQLTGCIPVGVGFLTEIEVL 281
           +N G+SP SVI LANNHF G IP S   M   L EI+F+NN L  C+P  +G L  + V 
Sbjct: 235 ENFGDSPVSVIVLANNHFHGCIPTSLVEM-KNLNEIIFMNNGLNSCLPADIGRLKNVTVF 294

Query: 282 DFSSNKLFGHLPDTISCMNQVEILNLAHNELSGVVSDLVCSLRSLVNLSVADNFFSGFNQ 341
           D S N+L G LP+++  M +VE LN+AHN LSG +   +C L  L N + + NFF+G   
Sbjct: 295 DVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTYSYNFFTGEAP 354

Query: 342 QCRNLFGGLDLSFNCIPGVGLQRPSPECSVIPGIGLSCLRVPGLPRPLV------CGRLV 401
            C  L    D   NC+PG   QR S +CS              L RP V      CGR V
Sbjct: 355 VCLRL-SEFDDRRNCLPGRPAQRSSRQCSAF------------LSRPSVDCGSFGCGRSV 409

BLAST of CmaCh05G013770 vs. TAIR 10
Match: AT1G62440.1 (leucine-rich repeat/extensin 2 )

HSP 1 Score: 305.1 bits (780), Expect = 8.5e-83
Identity = 155/322 (48.14%), Postives = 201/322 (62.42%), Query Frame = 0

Query: 60  LNRAYSVLQTWKSAISDDPTGILTTWVGSDVCSYQGIFCTNHSSGQIS--VTGIDLNGKN 119
           L +AY  LQ+WK AI  DP      W GSDVCSY GIFC    S   +  V GIDLN  +
Sbjct: 93  LRQAYIALQSWKQAIFSDPFNFTANWNGSDVCSYNGIFCAPSPSSPKTRVVAGIDLNHAD 152

Query: 120 LRGNLIKDLAFLTDLTLIHLNSNRFSGTIPVSFRQLQFLQELDLSNNNFSGEFPAVTLYI 179
           + G L ++L  LTDL L HLNSNRF G +P++F+ ++ L ELDLSNN F G+FP V L +
Sbjct: 153 MAGYLPRELGLLTDLALFHLNSNRFCGEVPLTFKHMKLLFELDLSNNRFVGKFPNVVLSL 212

Query: 180 PNLKYLDLRFNSFTGPIPEELFFKELDAIFINDNQFTGEIPQNLGNSPASVINLANNHFV 239
           P+LK+LDLR+N F G IP +LF KELDAIF+N N+F   IP+N+GNSP S + LA+N   
Sbjct: 213 PSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENMGNSPVSALVLADNDLG 272

Query: 240 GAIPASFGYMGPRLKEILFLNNQLTGCIPVGVGFLTEIEVLDFSSNKLFGHLPDTISCMN 299
           G IP S G MG  L EI+  N+ LTGC+P  +G L  + V D S N+L G LP +I  M 
Sbjct: 273 GCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRLSGPLPSSIGNMK 332

Query: 300 QVEILNLAHNELSGVVSDLVCSLRSLVNLSVADNFFSGFNQQCRNLFGG---LDLSFNCI 359
            +E LN+A+N  +GV+   +C L +L N + + NFF+G   +C  L G    ++ S NCI
Sbjct: 333 SLEQLNVANNRFTGVIPSSICQLSNLENFTYSSNFFTGDAPRCVALLGDNVVVNGSMNCI 392

Query: 360 PGVGLQRPSPECSVIPGIGLSC 377
            G   QR S ECS      + C
Sbjct: 393 DGKEDQRSSKECSSPASRSVDC 414

BLAST of CmaCh05G013770 vs. TAIR 10
Match: AT4G18670.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 304.7 bits (779), Expect = 1.1e-82
Identity = 154/316 (48.73%), Postives = 197/316 (62.34%), Query Frame = 0

Query: 59  QLNRAYSVLQTWKSAISDDPTGILTTWVGSDVCSYQGIFCTNHSSGQ--ISVTGIDLNGK 118
           +L  AY  LQ WK AI  DP    T W+GSDVCSY G++C      +   +V GIDLN  
Sbjct: 77  RLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCSYTGVYCAPALDNRRIRTVAGIDLNHA 136

Query: 119 NLRGNLIKDLAFLTDLTLIHLNSNRFSGTIPVSFRQLQFLQELDLSNNNFSGEFPAVTLY 178
           ++ G L ++L  LTDL L H+NSNRF GT+P  F +L+ L ELDLSNN F+G FP V L 
Sbjct: 137 DIAGYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNNRFAGIFPTVVLQ 196

Query: 179 IPNLKYLDLRFNSFTGPIPEELFFKELDAIFINDNQFTGEIPQNLGNSPASVINLANNHF 238
           +P+LK+LDLRFN F GP+P ELF K+LDAIFIN N+F  E+P NLG+SP SVI +ANNHF
Sbjct: 197 LPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNLGDSPVSVIVVANNHF 256

Query: 239 VGAIPASFGYMGPRLKEILFLNNQLTGCIPVGVGFLTEIEVLDFSSNKLFGHLPDTISCM 298
            G IP S G M   L+EI+F+ N    C+P  +G L  + V DFS N+L G LP +I  M
Sbjct: 257 HGCIPTSLGDM-RNLEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNELVGSLPASIGGM 316

Query: 299 NQVEILNLAHNELSGVVSDLVCSLRSLVNLSVADNFFSGFNQQCRNLFGGLDLSFNCIPG 358
             +E LN+AHN  SG +   +C L  L N + + NFF+G    C  L  G D   NC+P 
Sbjct: 317 VSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLGL-PGFDDRRNCLPA 376

Query: 359 VGLQRPSPECSVIPGI 373
              QR   +C+    +
Sbjct: 377 RPAQRSPGQCAAFSSL 390

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LHF11.1e-8246.07Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
O488091.2e-8148.14Leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
Q9SN461.6e-8148.73Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
Q4PSE63.0e-8043.93Leucine-rich repeat extensin-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
Q9T0K51.2e-7848.06Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=L... [more]
Match NameE-valueIdentityDescription
AT2G19780.16.5e-13159.79Leucine-rich repeat (LRR) family protein [more]
AT4G29240.16.0e-12962.50Leucine-rich repeat (LRR) family protein [more]
AT3G24480.17.7e-8446.07Leucine-rich repeat (LRR) family protein [more]
AT1G62440.18.5e-8348.14leucine-rich repeat/extensin 2 [more]
AT4G18670.11.1e-8248.73Leucine-rich repeat (LRR) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 272..285
score: 44.68
coord: 156..169
score: 50.28
NoneNo IPR availablePANTHERPTHR32093:SF86EXTENSIN-LIKE PROTEINcoord: 9..394
NoneNo IPR availablePANTHERPTHR32093LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATEDcoord: 9..394
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 62..344
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 132..189
e-value: 8.5E-8
score: 31.8
IPR013210Leucine-rich repeat-containing N-terminal, plant-typePFAMPF08263LRRNT_2coord: 63..98
e-value: 3.7E-5
score: 23.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 227..367
e-value: 1.1E-22
score: 82.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 61..226
e-value: 7.5E-39
score: 135.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G013770.1CmaCh05G013770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding