CmaCh05G013130 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G013130
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionEG45-like domain containing protein
LocationCma_Chr05: 9958581 .. 9959725 (-)
RNA-Seq ExpressionCmaCh05G013130
SyntenyCmaCh05G013130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGAAAAAAAAAAAAAAAATTATCATTCAATCACACCACAACAAAACCCAATTCCAGATCTCGAAAACCTGTTTGACTTTCAAATCCCCAATTTTTAAAAATTGGATTCCACTGAAAACCAATCTTTCAATCCCTTATTCTCCTGGAAAACATGTTCATATCAAGACCTCAAAACAATCCCCTCCAATGGCGGCGCCTCTGGTTCTTCCTCTTCCTCTTCCTCTTCCTCTCCCACCTTCTCCATTTCTCCCATGCCGATCTCGGCACCGCTTCCAGATACCCCCCGCCCTATTCCCGTAAGAACCCCCCGCTTCGATTTCCAACACCAAGTTCCGGTTTTGAAATTTCGGGATTCTGACTTTTGTTTGTTTGTTTGTTTGTTTCCGTTTGTTGCAGCGACGGAGTGTTTTGGTGGGGATTTGACTCAGTTCCCGACCAGCAACCTCTTCGCGGCTGCCGGAGACGGAGTTTGGGAGAACGGAGCAGCATGTGGGAGACAGTATTTTGTTAGGTGTTTCAGTGCGTCAGAGCCGGAAGCCTGTGTGCCTGATCAGACTATACAGATTACGATCGTCGATTACGCTCCGTCGATCGTTTCAGTTCCGACGGCGACCGGAACTACGATGATTCTGTCGACGACGGCGTATAATTCCATTGTTAATACCTCCGCTACTGTCAATTTCGTGACCGTTGAATTTCTGCAGTAATTTTCTCCACTCTGTTCTGCTTTTTAATGGATAAAAATTGCAATTTCTTTTTTTAAAATGTTTGATAATTTTTTTACTTGAGTTGACTTATAATTACAGTGTCTCAAAAATAATTTTGAAAACCCCCTTTTATTTACTTAATAATTTTCTTTTATATAAAATTATTATCCAAAAATTTAAGTTTTTTTTAAAAAAAATAAAATTTAAATATTTAAAAAGTTATTTCAAACATTGGTTGCTTGTCATTGTTGTAATATTTATGTGGTTGTTGATGCAGGGTATGATGGGTAAAGGTTTGGAGAGACTGGGATTGCTACCAAATTGTGAGTGATATTAATGCAAATTCTTGTATTTTAAATTGTAATATCCATGCTCCAACAATAATATCAATAATAATATTCTTTTCGTATTATTGCATTTACATTTCTAGTTAGT

mRNA sequence

AAAAAGAAAAAAAAAAAAAAAATTATCATTCAATCACACCACAACAAAACCCAATTCCAGATCTCGAAAACCTGTTTGACTTTCAAATCCCCAATTTTTAAAAATTGGATTCCACTGAAAACCAATCTTTCAATCCCTTATTCTCCTGGAAAACATGTTCATATCAAGACCTCAAAACAATCCCCTCCAATGGCGGCGCCTCTGGTTCTTCCTCTTCCTCTTCCTCTTCCTCTCCCACCTTCTCCATTTCTCCCATGCCGATCTCGGCACCGCTTCCAGATACCCCCCGCCCTATTCCCCGACGGAGTGTTTTGGTGGGGATTTGACTCAGTTCCCGACCAGCAACCTCTTCGCGGCTGCCGGAGACGGAGTTTGGGAGAACGGAGCAGCATGTGGGAGACAGTATTTTGTTAGGTGTTTCAGTGCGTCAGAGCCGGAAGCCTGTGTGCCTGATCAGACTATACAGATTACGATCGTCGATTACGCTCCGTCGATCGTTTCAGTTCCGACGGCGACCGGAACTACGATGATTCTGTCGACGACGGCGTATAATTCCATTGTTAATACCTCCGCTACTGTCAATTTCGTGACCGTTGAATTTCTGCAGGTATGATGGGTAAAGGTTTGGAGAGACTGGGATTGCTACCAAATTGTGAGTGATATTAATGCAAATTCTTGTATTTTAAATTGTAATATCCATGCTCCAACAATAATATCAATAATAATATTCTTTTCGTATTATTGCATTTACATTTCTAGTTAGT

Coding sequence (CDS)

ATGTTCATATCAAGACCTCAAAACAATCCCCTCCAATGGCGGCGCCTCTGGTTCTTCCTCTTCCTCTTCCTCTTCCTCTCCCACCTTCTCCATTTCTCCCATGCCGATCTCGGCACCGCTTCCAGATACCCCCCGCCCTATTCCCCGACGGAGTGTTTTGGTGGGGATTTGACTCAGTTCCCGACCAGCAACCTCTTCGCGGCTGCCGGAGACGGAGTTTGGGAGAACGGAGCAGCATGTGGGAGACAGTATTTTGTTAGGTGTTTCAGTGCGTCAGAGCCGGAAGCCTGTGTGCCTGATCAGACTATACAGATTACGATCGTCGATTACGCTCCGTCGATCGTTTCAGTTCCGACGGCGACCGGAACTACGATGATTCTGTCGACGACGGCGTATAATTCCATTGTTAATACCTCCGCTACTGTCAATTTCGTGACCGTTGAATTTCTGCAGGTATGA

Protein sequence

MFISRPQNNPLQWRRLWFFLFLFLFLSHLLHFSHADLGTASRYPPPYSPTECFGGDLTQFPTSNLFAAAGDGVWENGAACGRQYFVRCFSASEPEACVPDQTIQITIVDYAPSIVSVPTATGTTMILSTTAYNSIVNTSATVNFVTVEFLQV
Homology
BLAST of CmaCh05G013130 vs. ExPASy Swiss-Prot
Match: Q9ZV52 (EG45-like domain containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EGC2 PE=2 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 1.2e-05
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 0

Query: 18  FFLFLFLFLSHLLHFSHADLGTASRYPPPYSPTECFGGDLTQFPTSNLFAAAGDGVWENG 77
           F + + +F   L   + A  G A  Y PPY+ + C+G   TQ  T  L     + +W+NG
Sbjct: 8   FVVVMIVFAQILAPIAEAAQGKAVYYDPPYTRSACYG---TQRET--LVVGVKNNLWQNG 67

Query: 78  AACGRQYFVRCFSASE--PEACVPDQTIQITIVDYAPSIVSVPTATGTTMILSTTAYNSI 137
            ACGR+Y VRC  A+     AC   +T+ + +VD+              + LS  A+  I
Sbjct: 68  RACGRRYRVRCIGATYNFDRACT-GRTVDVKVVDFCRE------PCNGDLNLSRDAFRVI 120

Query: 138 VNTSA 141
            NT A
Sbjct: 128 ANTDA 120

BLAST of CmaCh05G013130 vs. ExPASy Swiss-Prot
Match: Q9ZP41 (EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-05
Identity = 38/122 (31.15%), Postives = 57/122 (46.72%), Query Frame = 0

Query: 33  SHADLGTASRYPPPYSPTECFGGDLTQFPTSNLFAAAGDGVWENGAACGRQYFVRCFSAS 92
           ++A  GTA+ Y PPY P+ C G          + AAA   +W NGA C + + V+C  A+
Sbjct: 22  AYASEGTATFYTPPYVPSACNG----YKNDGVMIAAASYAIWNNGAVCNKSFRVKCTGAT 81

Query: 93  E---PEACVPDQTIQITIVDYAPSIVSVPTATGTTMILSTTAYNSIVNTSATVNFVTVEF 152
               P  C    ++ + IVD  P+          T+ LS  A++ I N  A    + +EF
Sbjct: 82  NQGTPHPC-RGGSVLVKIVDLCPA------GCQATIDLSQEAFSQIANPDA--GKIKIEF 130

BLAST of CmaCh05G013130 vs. ExPASy Swiss-Prot
Match: Q9M0C2 (Putative EG45-like domain containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=EGC1 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-04
Identity = 42/127 (33.07%), Postives = 62/127 (48.82%), Query Frame = 0

Query: 20  LFLFLFLSHLLHFSHADLGTASRYPPPYSPTECFGGDLTQFPTSNLFAAAGDGVWENGAA 79
           +F    L  L  FS+A  G A+ Y    S T C+ G  TQ     + AAA D +W+NG  
Sbjct: 6   VFFSTVLVFLFSFSYATPGIATFYT---SYTPCYRG--TQ--EGVMIAAASDTLWDNGRV 65

Query: 80  CGRQYFVRCFSASEPEACVP----DQTIQITIVDYAPSIVSVPTATGTTMILSTTAYNSI 139
           CG+ + V+C   S P   VP     +++++ IVD+ PS         +T+ LS  A+  I
Sbjct: 66  CGKMFTVKC---SGPRNAVPHPCTGKSVKVKIVDHCPS------GCASTLDLSREAFAQI 116

Query: 140 VNTSATV 143
            N  A +
Sbjct: 126 ANPVAGI 116

BLAST of CmaCh05G013130 vs. TAIR 10
Match: AT2G18660.1 (plant natriuretic peptide A )

HSP 1 Score: 51.2 bits (121), Expect = 8.4e-07
Identity = 40/125 (32.00%), Postives = 59/125 (47.20%), Query Frame = 0

Query: 18  FFLFLFLFLSHLLHFSHADLGTASRYPPPYSPTECFGGDLTQFPTSNLFAAAGDGVWENG 77
           F + + +F   L   + A  G A  Y PPY+ + C+G   TQ  T  L     + +W+NG
Sbjct: 8   FVVVMIVFAQILAPIAEAAQGKAVYYDPPYTRSACYG---TQRET--LVVGVKNNLWQNG 67

Query: 78  AACGRQYFVRCFSASE--PEACVPDQTIQITIVDYAPSIVSVPTATGTTMILSTTAYNSI 137
            ACGR+Y VRC  A+     AC   +T+ + +VD+              + LS  A+  I
Sbjct: 68  RACGRRYRVRCIGATYNFDRACT-GRTVDVKVVDFCRE------PCNGDLNLSRDAFRVI 120

Query: 138 VNTSA 141
            NT A
Sbjct: 128 ANTDA 120

BLAST of CmaCh05G013130 vs. TAIR 10
Match: AT4G30380.1 (Barwin-related endoglucanase )

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-05
Identity = 42/127 (33.07%), Postives = 62/127 (48.82%), Query Frame = 0

Query: 20  LFLFLFLSHLLHFSHADLGTASRYPPPYSPTECFGGDLTQFPTSNLFAAAGDGVWENGAA 79
           +F    L  L  FS+A  G A+ Y    S T C+ G  TQ     + AAA D +W+NG  
Sbjct: 6   VFFSTVLVFLFSFSYATPGIATFYT---SYTPCYRG--TQ--EGVMIAAASDTLWDNGRV 65

Query: 80  CGRQYFVRCFSASEPEACVP----DQTIQITIVDYAPSIVSVPTATGTTMILSTTAYNSI 139
           CG+ + V+C   S P   VP     +++++ IVD+ PS         +T+ LS  A+  I
Sbjct: 66  CGKMFTVKC---SGPRNAVPHPCTGKSVKVKIVDHCPS------GCASTLDLSREAFAQI 116

Query: 140 VNTSATV 143
            N  A +
Sbjct: 126 ANPVAGI 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZV521.2e-0532.00EG45-like domain containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=EGC2 PE... [more]
Q9ZP414.5e-0531.15EG45-like domain containing protein OS=Citrus jambhiri OX=64884 GN=CjBAp12 PE=1 ... [more]
Q9M0C22.2e-0433.07Putative EG45-like domain containing protein 1 OS=Arabidopsis thaliana OX=3702 G... [more]
Match NameE-valueIdentityDescription
AT2G18660.18.4e-0732.00plant natriuretic peptide A [more]
AT4G30380.11.6e-0533.07Barwin-related endoglucanase [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036908RlpA-like domain superfamilyGENE3D2.40.40.10coord: 34..152
e-value: 1.3E-15
score: 59.6
IPR036908RlpA-like domain superfamilySUPERFAMILY50685Barwin-like endoglucanasescoord: 22..149
NoneNo IPR availablePANTHERPTHR47480EG45-LIKE DOMAIN CONTAINING PROTEINcoord: 18..152
NoneNo IPR availablePANTHERPTHR47480:SF2EG45-LIKE DOMAIN CONTAINING PROTEINcoord: 18..152
IPR007112Expansin/pollen allergen, DPBB domainPROSITEPS50842EXPANSIN_EG45coord: 49..152
score: 11.432536

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G013130.1CmaCh05G013130.1mRNA