CmaCh05G012850 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G012850
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	thylakoid lumenal 16.5 kDa protein, chloroplastic
Location	Cma_Chr05: 9805479 .. 9808098 (+)
RNA-Seq Expression	CmaCh05G012850
Synteny	CmaCh05G012850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACGACAGAATCCACCAATCTTATCCCCCAAAAATTCCAAGCACCCAATGCCTCTGATTTTGCCCAGGAAAAAAGTCCCAAGAGAATAACGCAAAAGAGGAGAAACAAACACACACAGAGATGGCAACGTCCTTCCTATCAACAGCAAACACGTTCCATTCTTCCTCACCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCTTCACCTCCATTGTTGAGATCAAGATTTTCTTGCCTTAATTGCCGTAATAACGCTAGAAGATCGGTAATCTGCAAGGGAAATAATGACCCACCATCGAAAATTCCGAGTTTAACCAAGAGAAGCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTGGTGGGTCAAGGATTCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAAGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTGGAAAGACAAGGGGTTATCAGCTCCGCCAATAAAGAAAAAGGTTTTGTATGCACTCTATGTGTTTGTGTTTAGTTCTCTGTGAAACTTCCAACTTCAGAATTTGATCCTATTACTCAAAACGTTTTGGTTTTCCAATTGGGTTCTTTCTGTGGTCTTATTTTATTTGAATTAACTACTATGCTCATTCATAACCATTTTATCAATATTCTTAGCATAACTTTAAGGGGTATTTGACTCATTGATTGTGTTTGTATAGCCTAGAGTTCGTAAGCCAAGCATATGTTTGTAATGTGGGCTTCTTATGTCTTGGCTATAGGTTTGCTAATCCTATGAGTTACATAAATCCAAGTTCTTCAAGCTATGTATTTACTTTTGCAAAACTACAAACCCACAAGTCAAAACTCACCCATATAAATTTAGGTTTCCATAACTCAATCCTTTTTAGAATAATCCATGTAACGGTTGAAGTCCACCACTAGCAGATATTATCCTCTTTGAGCTTTTACTTCTAGGCTTCCCCTCGAAGTTTTTAAAGTATGTCTACTATGGAGAGGTTTTCACATCTTTATACAGAATGCTTCGTTTTCCTCTCCAACCGATGTGGGATCTCACAATCTACTCCCTTCAAGGCCCAACGTCCTTGCTGGCACACCGCCTTGTGTACACCCCCCTTTGGGGCTCAGCCTCCTCGTTGGCACATCGCCCGGTGTCTGGTTTTGATACCATTTGTAACGGTCCAAGCTCACGACTAGAAGATATTGTCCTCTTTGGGCTTCTCCTCAAAGTTTTTAAAGCGCATTTGCTAGAGAGAGGTTTTCACACCCTTATAAAGAATGATTCGTTCTCCTCCCCAACCAATGTGGGATCTCACAATCCACCCCCGTTCGGGGATTAGCGTCCTTGTTGGCACATCCCCTCATGTCCACCCCCCTGCACATCATCCGATGTTTAGCTCTGATACCATTTGTAACGATTCAAGCCCACCACTAGCAGATATTGTCCGCTTTGGACTTTCCCTTCCGGGCTTCCCCTCAAGGTTTTTCAAACGCATCTTAGGAAGAAGTTTCCACACCCTTATAAAGAATGCTTCATTCTCCTCCTCAACCGATGTGGCATCTCACAATCCAAATGTTGGCATCTCACAATCCAAATGCAGGCTATAACGCTTTTCAACCTCATTTGAAGCAAAGCTATACTTAATAAAACATAGAGTCTGGTCTAGGCTTTTGAAATTATGAGGCTTAATTCTTCATGGGAGGGGATCATAGAGTTTATCATAAGCTAGCAGAGTTGAGCTATGAGAAAGGGCCTCTACAACAAGCTGAAACCTTGCCATAATCATTCGGAATTTTGCAGGATACCTCCAGGAAGTTGTGTTTAAGCTAAGCAAAGTTGGTCAAGCCATTGATAACAATGACTTCTCAACCGCAAGTTCAGTTCTTGGGGGTAGTAATGACGCAGATTGGGTTCGGAATGCCAACTTAGCCTTCAACAAGGTTAGCAAAATAGATTGAACATTTCATGAGAAGTTAAATAGTTCGAGGAATTTCTAACTTTTTTGTGTAATTTCTTGAGCAGCTGAGCACAAGTCCTGAAGAGAAATCTGAAGTGGACGCATTTAACTCCTCTCTAGCTTCATTAATCTCATCAGGTGGTTAAAACAGGGTAAAACTACTAAGAACTGAAAGGTTTAACCCTCCACAGAGTTCTAAACGATATAACATTTTTGAATTGCAGTGACTCAGAATGATGTCCAATCCTCTAAAACTGCCTTTGTAGCATCGGCCAGTGCACTTGAGAAATGGACCGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGAGTGGAAAACAACCATCTCTACTGATCTCATTTCTACTGTATTTTTAGTCTCCTCACCTCCTAAATCATTGCAGTTTAAGGTCAAGAAGCTGATTTTTCTTGTCATCTTCTTACTGAGTTTCTGGTGTCAATGTTACTGAACTTTGAATGGGGTTAATATGAATGTTATTGTTGGTTTATCCAAGAAAACCTACACATTTGTTTATGAACAAAGCAGAGTATCAGTTCAGTTAGGATTCCCCAAAACACTGGCAAAATGGTGATTGACAAGAATTAGGAGTTCAAGAACATCCTACAGATTTTTTTT

mRNA sequence

AAGACGACAGAATCCACCAATCTTATCCCCCAAAAATTCCAAGCACCCAATGCCTCTGATTTTGCCCAGGAAAAAAGTCCCAAGAGAATAACGCAAAAGAGGAGAAACAAACACACACAGAGATGGCAACGTCCTTCCTATCAACAGCAAACACGTTCCATTCTTCCTCACCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCTTCACCTCCATTGTTGAGATCAAGATTTTCTTGCCTTAATTGCCGTAATAACGCTAGAAGATCGGTAATCTGCAAGGGAAATAATGACCCACCATCGAAAATTCCGAGTTTAACCAAGAGAAGCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTGGTGGGTCAAGGATTCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAAGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTGGAAAGACAAGGGGTTATCAGCTCCGCCAATAAAGAAAAAGGATACCTCCAGGAAGTTGTGTTTAAGCTAAGCAAAGTTGGTCAAGCCATTGATAACAATGACTTCTCAACCGCAAGTTCAGTTCTTGGGGGTAGTAATGACGCAGATTGGGTTCGGAATGCCAACTTAGCCTTCAACAAGCTGAGCACAAGTCCTGAAGAGAAATCTGAAGTGGACGCATTTAACTCCTCTCTAGCTTCATTAATCTCATCAGTGACTCAGAATGATGTCCAATCCTCTAAAACTGCCTTTGTAGCATCGGCCAGTGCACTTGAGAAATGGACCGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGAGTGGAAAACAACCATCTCTACTGATCTCATTTCTACTGTATTTTTAGTCTCCTCACCTCCTAAATCATTGCAGTTTAAGGTCAAGAAGCTGATTTTTCTTGTCATCTTCTTACTGAGTTTCTGGTGTCAATGTTACTGAACTTTGAATGGGGTTAATATGAATGTTATTGTTGGTTTATCCAAGAAAACCTACACATTTGTTTATGAACAAAGCAGAGTATCAGTTCAGTTAGGATTCCCCAAAACACTGGCAAAATGGTGATTGACAAGAATTAGGAGTTCAAGAACATCCTACAGATTTTTTTT

Coding sequence (CDS)

ATGGCAACGTCCTTCCTATCAACAGCAAACACGTTCCATTCTTCCTCACCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCTTCTTCACCTCCATTGTTGAGATCAAGATTTTCTTGCCTTAATTGCCGTAATAACGCTAGAAGATCGGTAATCTGCAAGGGAAATAATGACCCACCATCGAAAATTCCGAGTTTAACCAAGAGAAGCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTGGTGGGTCAAGGATTCTCCGATGCAAATGCTGCGATTCTTGAAGCCGATGATGATGAAGAGCTTCTGGAAAAGGTGAAGAAGGATAGAAAGAAGAGGCTGGAAAGACAAGGGGTTATCAGCTCCGCCAATAAAGAAAAAGGATACCTCCAGGAAGTTGTGTTTAAGCTAAGCAAAGTTGGTCAAGCCATTGATAACAATGACTTCTCAACCGCAAGTTCAGTTCTTGGGGGTAGTAATGACGCAGATTGGGTTCGGAATGCCAACTTAGCCTTCAACAAGCTGAGCACAAGTCCTGAAGAGAAATCTGAAGTGGACGCATTTAACTCCTCTCTAGCTTCATTAATCTCATCAGTGACTCAGAATGATGTCCAATCCTCTAAAACTGCCTTTGTAGCATCGGCCAGTGCACTTGAGAAATGGACCGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGGCTTTGA

Protein sequence

MATSFLSTANTFHSSSPSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRSVICKGNNDPPSKIPSLTKRSLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLERQGVISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNKLSTSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL

Homology

[Close]

BLAST of CmaCh05G012850 vs. ExPASy Swiss-Prot
Match: O22773 (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g02530 PE=1 SV=3)

HSP 1 Score: 194.1 bits (492), Expect = 1.7e-48
Identity = 132/240 (55.00%), Postives = 162/240 (67.50%), Query Frame = 0


Query: 1   MATSFL--STANTFHSSSPSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRSVICKGNNDP 60
           MA S L  ST N F S++ SSS  +  + S            N +N    S++ K     
Sbjct: 1   MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSG-----------NSKNQTSSSLLWK----- 60

Query: 61  PSKIPSLTKRSLSICFISSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKRL 120
                   +R LS+ F+SS +   LV   +   DANAAILEADDDEELLEKVK+DRKKR+
Sbjct: 61  --------RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRI 120

Query: 121 ERQGVISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNK 180
           ERQ V++SA KEKGYLQ++V+KLSKVGQAI+NND   A  VLG   D +WV+  NLAF K
Sbjct: 121 ERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTK 180

Query: 181 LSTSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           LSTSPEE +EV+AFNSSLASLI+SV +ND++SSK AFV+SA A EKWT L GL+ QLKGL
Sbjct: 181 LSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216

[Close]

BLAST of CmaCh05G012850 vs. TAIR 10
Match: AT4G02530.1 (chloroplast thylakoid lumen protein )

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-49
Identity = 132/240 (55.00%), Postives = 162/240 (67.50%), Query Frame = 0


Query: 1   MATSFL--STANTFHSSSPSSSSSSSSSSSSPPLLRSRFSCLNCRNNARRSVICKGNNDP 60
           MA S L  ST N F S++ SSS  +  + S            N +N    S++ K     
Sbjct: 1   MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSG-----------NSKNQTSSSLLWK----- 60

Query: 61  PSKIPSLTKRSLSICFISSFI-FPLVG--QGFSDANAAILEADDDEELLEKVKKDRKKRL 120
                   +R LS+ F+SS +   LV   +   DANAAILEADDDEELLEKVK+DRKKR+
Sbjct: 61  --------RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRI 120

Query: 121 ERQGVISSANKEKGYLQEVVFKLSKVGQAIDNNDFSTASSVLGGSNDADWVRNANLAFNK 180
           ERQ V++SA KEKGYLQ++V+KLSKVGQAI+NND   A  VLG   D +WV+  NLAF K
Sbjct: 121 ERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTK 180

Query: 181 LSTSPEEKSEVDAFNSSLASLISSVTQNDVQSSKTAFVASASALEKWTALAGLVGQLKGL 236
           LSTSPEE +EV+AFNSSLASLI+SV +ND++SSK AFV+SA A EKWT L GL+ QLKGL
Sbjct: 181 LSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216

The following BLAST results are available for this feature:

BLAST of CmaCh05G012850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22773	1.7e-48	55.00	Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CmaCh05G012850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02530.1	1.2e-49	55.00	chloroplast thylakoid lumen protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
IPR038862	Chloroplast thylakoid lumenal protein MPH2	PANTHER	PTHR35742	THYLAKOID LUMENAL 16.5 KDA PROTEIN, CHLOROPLASTIC	coord: 1..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G012850.1	CmaCh05G012850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010206	photosystem II repair