CmaCh05G012820 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G012820
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	cucumber peeling cupredoxin-like
Location	Cma_Chr05: 9792244 .. 9793229 (-)
RNA-Seq Expression	CmaCh05G012820
Synteny	CmaCh05G012820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTAGGATTTAATCGGACGGCGGTTCTCCTCCTCTTCATGGCCGCCGCATCGTGGCAGTGCTCTTCCGCCGCCACTTATACTGTCGGCGACGCATTGGGTTGGACTGTCCCGCCTATTCCTACCGCCTACTCCGGGTGGGCTTCCGATAAAACGTTTGTTGTCGGAGATATTCTTGGTAAGAAAAAAAAAAAACGTTAAATTAATTTATTTTATTAATTACGATTATTATGAAATATACCACATAAAAAATTGTTTTTATATAATAATATTTCTAAAGTCGAGATAATTAATAGAAAAAAAAATCTATTCTTCAATATTGTTGGATGAAATTCATGGTATCAGAATCATGTCCTAAACTGATTCATGTTAATTGAATCTTTAAATGTTGAACAAAGTCGAGGCTCCTCGAAGACATAGTAAAAAATGACTAAGACTCCAAAAGAAAAAAAGTTAAGTCTCGATTAAGAGGAGACGTATTTTGTTCGAGAGGAGGTGTTGGATGAAAGTCTCATATATCATATTATTGTGAAGAGTGTGTTGGACGATCGAAAGCTGATTGATTTTGTGCAGTTTTCAACTTTGTTAACGAACGACATGACGTAACGGAAGTGACAAAAGGTTCTTATAATTCTTGCAATGGTAGCAATCCGATCTCCGTGGAGACCAAGAGTCCAGCAAGGATCACACTCCTTTCTGGCGGTGACCACCATTTCATGTGCTCGTTCCTTAGCCATTGCAACGATGGTCAAAAGTTGTCCATCACCGTCAGAGCAACCTCTTCTTCTGCTCCGTCACCCTCTCCCTCTCTCACCGCCGGCCTCACTACACCTCCGCCCTCAATCGCGACGCCTCCATCTGACAACATCCCTTCAACTCTATCTCCGACTACCGCCCCACCGCCTCCCAGCACCGCTACATCGCTCCGAACCTCCACCTTCTCCGCCTCTATTCTCGCCGTCGTCGTCGCTCTGCTGTATTAG

mRNA sequence

ATGGCCGTAGGATTTAATCGGACGGCGGTTCTCCTCCTCTTCATGGCCGCCGCATCGTGGCAGTGCTCTTCCGCCGCCACTTATACTGTCGGCGACGCATTGGGTTGGACTGTCCCGCCTATTCCTACCGCCTACTCCGGGTGGGCTTCCGATAAAACGTTTGTTGTCGGAGATATTCTTGTTTTCAACTTTGTTAACGAACGACATGACGTAACGGAAGTGACAAAAGGTTCTTATAATTCTTGCAATGGTAGCAATCCGATCTCCGTGGAGACCAAGAGTCCAGCAAGGATCACACTCCTTTCTGGCGGTGACCACCATTTCATGTGCTCGTTCCTTAGCCATTGCAACGATGGTCAAAAGTTGTCCATCACCGTCAGAGCAACCTCTTCTTCTGCTCCGTCACCCTCTCCCTCTCTCACCGCCGGCCTCACTACACCTCCGCCCTCAATCGCGACGCCTCCATCTGACAACATCCCTTCAACTCTATCTCCGACTACCGCCCCACCGCCTCCCAGCACCGCTACATCGCTCCGAACCTCCACCTTCTCCGCCTCTATTCTCGCCGTCGTCGTCGCTCTGCTGTATTAG

Coding sequence (CDS)

ATGGCCGTAGGATTTAATCGGACGGCGGTTCTCCTCCTCTTCATGGCCGCCGCATCGTGGCAGTGCTCTTCCGCCGCCACTTATACTGTCGGCGACGCATTGGGTTGGACTGTCCCGCCTATTCCTACCGCCTACTCCGGGTGGGCTTCCGATAAAACGTTTGTTGTCGGAGATATTCTTGTTTTCAACTTTGTTAACGAACGACATGACGTAACGGAAGTGACAAAAGGTTCTTATAATTCTTGCAATGGTAGCAATCCGATCTCCGTGGAGACCAAGAGTCCAGCAAGGATCACACTCCTTTCTGGCGGTGACCACCATTTCATGTGCTCGTTCCTTAGCCATTGCAACGATGGTCAAAAGTTGTCCATCACCGTCAGAGCAACCTCTTCTTCTGCTCCGTCACCCTCTCCCTCTCTCACCGCCGGCCTCACTACACCTCCGCCCTCAATCGCGACGCCTCCATCTGACAACATCCCTTCAACTCTATCTCCGACTACCGCCCCACCGCCTCCCAGCACCGCTACATCGCTCCGAACCTCCACCTTCTCCGCCTCTATTCTCGCCGTCGTCGTCGCTCTGCTGTATTAG

Protein sequence

MAVGFNRTAVLLLFMAAASWQCSSAATYTVGDALGWTVPPIPTAYSGWASDKTFVVGDILVFNFVNERHDVTEVTKGSYNSCNGSNPISVETKSPARITLLSGGDHHFMCSFLSHCNDGQKLSITVRATSSSAPSPSPSLTAGLTTPPPSIATPPSDNIPSTLSPTTAPPPPSTATSLRTSTFSASILAVVVALLY

Homology

[Close]

BLAST of CmaCh05G012820 vs. ExPASy Swiss-Prot
Match: Q41001 (Blue copper protein OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.3e-20
Identity = 75/196 (38.27%), Postives = 99/196 (50.51%), Query Frame = 0


Query: 3   VGFNRTAVLLLFMAAASWQCSSAAT-YTVGDALGWTVPPIPTAYSGWASDKTFVVGDILV 62
           + F+   VL   +A  +    S AT YTVGD  GW    I   YS WASDKTF VGD LV
Sbjct: 1   MAFSNALVLCFLLAIINMALPSLATVYTVGDTSGWV---IGGDYSTWASDKTFAVGDSLV 60

Query: 63  FNFVNERHDVTEVTKGSYNSCNGSNPISVETKSPARITLLSGGDHHFMCSFLSHCNDGQK 122
           FN+    H V EV +  Y SC   N IS ++     I L   G H+F+C    H   G K
Sbjct: 61  FNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMK 120

Query: 123 LSITVRATSSSAPSPSPSLTAGLTTPPPS-IATPPSDNIPSTLSPTTAPPPPSTATSLRT 182
           LSI V+A+S S+ +PS        TP  S   +P SD+ P+  + TT P         + 
Sbjct: 121 LSIKVKASSGSSAAPS-------ATPSSSGKGSPSSDDTPAATTTTTTP--------TKQ 178

Query: 183 STFSASILAVVVALLY 197
           +  SA+ L+ +VAL +
Sbjct: 181 NESSATSLSPIVALFF 178

[Close]

BLAST of CmaCh05G012820 vs. ExPASy Swiss-Prot
Match: Q07488 (Blue copper protein OS=Arabidopsis thaliana OX=3702 GN=BCB PE=2 SV=2)

HSP 1 Score: 95.1 bits (235), Expect = 9.2e-19
Identity = 78/203 (38.42%), Postives = 103/203 (50.74%), Query Frame = 0


Query: 1   MAVGFNRTAVLLLFMAAASWQCSSAATYTVGDALGWTVPPIPTAYSGWASDKTFVVGDIL 60
           MA  F     L+L  AA       A  Y VGD   WT P  P  Y+ WA+ KTF VGD L
Sbjct: 1   MAGVFKTVTFLVLVFAAV---VVFAEDYDVGDDTEWTRPMDPEFYTTWATGKTFRVGDEL 60

Query: 61  VFNFVNERHDVTEVTKGSYNSCNGSNPISVETKSPARITLLSGGDHHFMCSFLSHCNDGQ 120
            F+F   RHDV  V++ ++ +C    PIS  T  P +I L + G  +F+C+   HC  GQ
Sbjct: 61  EFDFAAGRHDVAVVSEAAFENCEKEKPISHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQ 120

Query: 121 KLSITVRAT---------SSSAPSPSPSLTAGLTTPPPSIATPPSDNIPSTLSPTTAPPP 180
           KLSITV A          + + P+P  + + G TTPP    T      PS  S TT  P 
Sbjct: 121 KLSITVVAAGATGGATPGAGATPAPGSTPSTGGTTPP----TAGGTTTPSGSSGTTT-PA 180

Query: 181 PSTATSLRTSTFSASILAVVVAL 195
            + A+SL  +TF  + ++ VVAL
Sbjct: 181 GNAASSLGGATFLVAFVSAVVAL 195

[Close]

BLAST of CmaCh05G012820 vs. ExPASy Swiss-Prot
Match: P29602 (Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3)

HSP 1 Score: 95.1 bits (235), Expect = 9.2e-19
Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 25  AATYTVGDALGWTVPPIPTAYSGWASDKTFVVGDILVFNFVNERHDVTEV-TKGSYNSCN 84
           +  + VGD  GW+VP  P  YS WA+ KTF VGD L FNF    H+V E+ TK S+++CN
Sbjct: 2   STVHIVGDNTGWSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 61

Query: 85  GSNPIS-VETKSPARITLLSGGDHHFMCSFLSHCNDGQKLSITVRATSSSAPSPSPSLTA 144
             N  + VE  SP    L   G H+F+C+  +HC++GQKLSI V A +++   P PS + 
Sbjct: 62  FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSMPPPSSSP 121

Query: 145 GLTTPPPSIATPPS 157
             +  PP +  PPS
Sbjct: 122 PSSVMPPPVMPPPS 135

[Close]

BLAST of CmaCh05G012820 vs. ExPASy Swiss-Prot
Match: P42849 (Umecyanin OS=Armoracia rusticana OX=3704 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.3e-16
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 28  YTVGDALGWTVPPIPTAYSGWASDKTFVVGDILVFNFVNERHDVTEVTKGSYNSCNGSNP 87
           Y VG  + W  P  P  Y  WA+ KTF VGD L F+F    HDV  VTK ++++C   NP
Sbjct: 3   YDVGGDMEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENP 62

Query: 88  ISVETKSPARITLLSGGDHHFMCSFLSHCNDGQKLSITVRATSSSAPSPSP 139
           IS  T  P +I L + G  +++C+   HC  GQKLSI V     +    +P
Sbjct: 63  ISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGATP 113

[Close]

BLAST of CmaCh05G012820 vs. ExPASy Swiss-Prot
Match: P80728 (Mavicyanin OS=Cucurbita pepo OX=3663 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-15
Identity = 45/109 (41.28%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 25  AATYTVGDALGWTVPPIPTAYSGWASDKTFVVGDILVFNFVNERHDVTEVTKGSYNSCNG 84
           A  + VGD+ GWT   +P  Y+ WAS   F VGD L+FN+ N+ H+V +V +  + SCN 
Sbjct: 1   ATVHKVGDSTGWTT-LVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60

Query: 85  SNPISVETKSPARITLLSGGDHHFMCSFLSHCNDGQKLSITVRATSSSA 134
           S+P +  T     I L   G  +F+C    HC  GQK+ I V   SSSA
Sbjct: 61  SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKVDPGSSSA 108

[Close]

BLAST of CmaCh05G012820 vs. TAIR 10
Match: AT5G20230.1 (blue-copper-binding protein )

HSP 1 Score: 95.1 bits (235), Expect = 6.5e-20
Identity = 78/203 (38.42%), Postives = 103/203 (50.74%), Query Frame = 0


Query: 1   MAVGFNRTAVLLLFMAAASWQCSSAATYTVGDALGWTVPPIPTAYSGWASDKTFVVGDIL 60
           MA  F     L+L  AA       A  Y VGD   WT P  P  Y+ WA+ KTF VGD L
Sbjct: 1   MAGVFKTVTFLVLVFAAV---VVFAEDYDVGDDTEWTRPMDPEFYTTWATGKTFRVGDEL 60

Query: 61  VFNFVNERHDVTEVTKGSYNSCNGSNPISVETKSPARITLLSGGDHHFMCSFLSHCNDGQ 120
            F+F   RHDV  V++ ++ +C    PIS  T  P +I L + G  +F+C+   HC  GQ
Sbjct: 61  EFDFAAGRHDVAVVSEAAFENCEKEKPISHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQ 120

Query: 121 KLSITVRAT---------SSSAPSPSPSLTAGLTTPPPSIATPPSDNIPSTLSPTTAPPP 180
           KLSITV A          + + P+P  + + G TTPP    T      PS  S TT  P 
Sbjct: 121 KLSITVVAAGATGGATPGAGATPAPGSTPSTGGTTPP----TAGGTTTPSGSSGTTT-PA 180

Query: 181 PSTATSLRTSTFSASILAVVVAL 195
            + A+SL  +TF  + ++ VVAL
Sbjct: 181 GNAASSLGGATFLVAFVSAVVAL 195

[Close]

BLAST of CmaCh05G012820 vs. TAIR 10
Match: AT5G26330.1 (Cupredoxin superfamily protein )

HSP 1 Score: 92.4 bits (228), Expect = 4.2e-19
Identity = 72/173 (41.62%), Postives = 88/173 (50.87%), Query Frame = 0


Query: 23  SSAATYTVGDALGWTVPPIPTAYSGWASDKTFVVGDILVFNFVNERHDVTEVTKGSYNSC 82
           S AA Y VGD+ GWT       Y  WAS KTF +GD ++F +  + H+V  VT   Y SC
Sbjct: 19  SEAAVYKVGDSAGWTT-IANVDYKLWASTKTFHIGDTVLFEYNPQFHNVMRVTHPMYRSC 78

Query: 83  NGSNPISVETKSPARITLLSGGDHHFMCSFLSHCNDGQKLSITVRATSSSAPSPSPSLTA 142
           N S PIS  T     ITL + G H F C    HC  GQKL + V   +SS P   P    
Sbjct: 79  NTSKPISTFTTGNDSITLTNHGHHFFFCGVPGHCLAGQKLDLHVLLPASSTPLSDP---- 138

Query: 143 GLTTPPPSIATPPSDNIPSTLSPTTAPPPPSTATSLRTSTFSASILAVVVALL 196
               P  S ++PPS  IP+   P    P PS A SL  S  +A I+AVV  L+
Sbjct: 139 ----PTSSSSSPPSTTIPAAGVP---GPSPSLAASL-PSMVTAQIVAVVTLLV 178

[Close]

BLAST of CmaCh05G012820 vs. TAIR 10
Match: AT3G20570.1 (early nodulin-like protein 9 )

HSP 1 Score: 81.3 bits (199), Expect = 9.8e-16
Identity = 62/178 (34.83%), Postives = 88/178 (49.44%), Query Frame = 0


Query: 25  AATYTVGDALGWTVPPIPTAYSGWASDKTFVVGDILVFNFVNERHDVTEVTKGSYNSCNG 84
           A  +TVG A GWTVP     YS WA    F +GD L+F + + +  V +VT+ +Y+SCN 
Sbjct: 27  AREFTVGGATGWTVPSGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYDSCNT 86

Query: 85  SNPISVETKSPARITLLSGGDHHFMCSFLSHCNDGQKLSITVRA-------TSSSAPSPS 144
            +P +        +TL   G ++F+     +C   +KL + V A       T+SS PSP+
Sbjct: 87  DSPTAKFADGKTSVTLNHSGPYYFISGNKDNCKKNEKLVVIVMADRSGNKNTASSPPSPA 146

Query: 145 PSLTAGLTTPPPSIATPPSDNIPSTLSPTTAPPPPSTATSLRTSTFSASILAVVVALL 196
           P+         PS  + PS  +  T   T AP P    TS  T   +AS L+ V ALL
Sbjct: 147 PA---------PSGESAPSPPVSGTFEMTPAPTP---TTSEDTPNSAASSLSFVAALL 192

[Close]

BLAST of CmaCh05G012820 vs. TAIR 10
Match: AT2G32300.1 (uclacyanin 1 )

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-15
Identity = 56/174 (32.18%), Postives = 88/174 (50.57%), Query Frame = 0


Query: 10  VLLLFMAAASWQCSSAATYTVGDALGWTVPPIPTAYSGWASDKTFVVGDILVFNFVNERH 69
           +++  +A      + A  +T+G   GWTV     +   WA+ +TF VGD LVF++    H
Sbjct: 8   IIISVLATTLIGLTVATDHTIGGPSGWTV---GASLRTWAAGQTFAVGDNLVFSYPAAFH 67

Query: 70  DVTEVTKGSYNSCNGSNPISVETKSPARITLLSGGDHHFMCSFLSHCNDGQKLSITVRAT 129
           DV EVTK  ++SC    P+       + + L + G  +F+C    HC+ G KL + V  T
Sbjct: 68  DVVEVTKPEFDSCQAVKPLITFANGNSLVPLTTPGKRYFICGMPGHCSQGMKLEVNVVPT 127

Query: 130 SSSAP-SPSPSLTAGLTTPPPSIATPPSDNIP----STLSPTTAPPPPSTATSL 179
           ++ AP +P P+    L  P PS   P    +P      LSP+++ P PS++  L
Sbjct: 128 ATVAPTAPLPNTVPSLNAPSPSSVLPIQPLLPLNPVPVLSPSSSTPLPSSSLPL 178

[Close]

BLAST of CmaCh05G012820 vs. TAIR 10
Match: AT2G26720.1 (Cupredoxin superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-14
Identity = 56/167 (33.53%), Postives = 79/167 (47.31%), Query Frame = 0


Query: 28  YTVGDALGWTVPPIPTAYSGWASDKTFVVGDILVFNFVNERHDVTEVTKGSYNSCNGSNP 87
           + VG+  GWT+  I   Y  WAS + F VGD LVF +  + HDVTEVT   +  C  S P
Sbjct: 29  HKVGNTKGWTM--IGGDYEAWASSRVFQVGDTLVFAYNKDYHDVTEVTHNDFEMCESSKP 88

Query: 88  ISVETKSPARITLLSGGDHHFMCSFLSHCNDGQKLSITVRATSSS-----APSPSPSLTA 147
           +         I+L   G  HF+C    HC  GQKL I V   S        P P  S ++
Sbjct: 89  LRRYKTGSDSISLTKPGLQHFICGVPGHCKKGQKLQIHVLPASLGHVAVPVPGPVRSQSS 148

Query: 148 GLTTPPPSIATPPSDNIPS-TLSPTTAPPPPSTATSLRTSTFSASIL 189
             +  P  +  PP +N P   + PT A    ++A  + T +F  +++
Sbjct: 149 SSSPSPSPLVDPPVNNAPQYQMGPTPASHSAASADFIFTFSFDLTLI 193

The following BLAST results are available for this feature:

BLAST of CmaCh05G012820 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q41001	8.3e-20	38.27	Blue copper protein OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
Q07488	9.2e-19	38.42	Blue copper protein OS=Arabidopsis thaliana OX=3702 GN=BCB PE=2 SV=2	[more]
P29602	9.2e-19	43.28	Cucumber peeling cupredoxin OS=Cucumis sativus OX=3659 PE=1 SV=3	[more]
P42849	7.3e-16	40.54	Umecyanin OS=Armoracia rusticana OX=3704 PE=1 SV=1	[more]
P80728	1.2e-15	41.28	Mavicyanin OS=Cucurbita pepo OX=3663 PE=1 SV=1	[more]

BLAST of CmaCh05G012820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20230.1	6.5e-20	38.42	blue-copper-binding protein	[more]
AT5G26330.1	4.2e-19	41.62	Cupredoxin superfamily protein	[more]
AT3G20570.1	9.8e-16	34.83	early nodulin-like protein 9	[more]
AT2G32300.1	1.7e-15	32.18	uclacyanin 1	[more]
AT2G26720.1	3.1e-14	33.53	Cupredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 26..138 e-value: 1.6E-33 score: 117.2
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 25..126
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 36..120 e-value: 9.7E-23 score: 80.0
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 26..128 score: 38.593914
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..178
None	No IPR available	PANTHER	PTHR33021:SF368	PEELING CUPREDOXIN, PUTATIVE-RELATED	coord: 11..144
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 11..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G012820.1	CmaCh05G012820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0042795	snRNA transcription by RNA polymerase II
biological_process	GO:0042796	snRNA transcription by RNA polymerase III
cellular_component	GO:0016020	membrane
cellular_component	GO:0019185	snRNA-activating protein complex
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0043565	sequence-specific DNA binding