CmaCh05G012740 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G012740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCUE domain-containing protein
LocationCma_Chr05: 9724338 .. 9728329 (-)
RNA-Seq ExpressionCmaCh05G012740
SyntenyCmaCh05G012740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGAACGTTCAGATTCATACAAGCAGCAACATCCACAATGTGAAATGAACCAATAAACAACGAGCACGTGTCATGCATTGGAGAAATTTTCAAAGGCCTTCTTTTTCTTCGTACGACGTGTCGTTTCTGAATTGCTTGTTCTTTTAATCTCGTTGGTGAGAATATGCAGATGACGATCGGACTCTTCGTAGCCATGAACGAAGATGAGCCGAAGTTTTAGAGCTTCAAATGCTAAGAATTTCTATCTTTCCTGATTCGTTTTCCATCTGAAATCCCTTGGAATTGAGTTTGTTGTAATTAATTTTGTTTTTGGTGGATGAGATCTTGAGGATTTTATCCTAATTCGATCGTTTTCTCTGCGTTTTTTTTCTTCTATTGAATTGGAATATTGTTGAAGATGTTTTAGTTTGGATCCGGTGGTTTTGCTGCATGAATTGGATTGAAGGTTTGGGTGCGGATCGAGCACTTGAAGAATAGAGGAAGCTGAGCAGCGGCGCTGAAACATGTCTGCCATCGTGTGCGGGAAGAGATCCTTATTTGAAGACCTGCCTCCGCATCCCGTCTCTAAAAGAATTCGTTGTTCATCTTCTTCGCCTGTGCGGTTTTCGCCTCCGAGGTCATCCAATCAATCTGTGTTTCCGTTCCCCCAGACGTCCTCCTCACAATCGGCTCATTTAGTCGATTATCTCTGCGAAAATTTTCCTGATATGGATAAGCAGGTCTGTTTAGGATGAGGAATTATAAATTCGAAATGGTTGATCATTTTGCGAACTTCACGTATTGATGTTATTTGAAGACATTTCTGATGAAAGACTTTTTGCTTTATAATTCGAGGGAATGAATACATGAATACATACTGATTGCTTTTAAATTGTTATTCTAGCTTCTAGAGAGGGTACTTGAAGAATGTGGTGATGATCTCGATTTAGCCATTAGAAGTTTGAACCAGCTTCATTTGGGTTATAATGACAGAAACTTGGGCAATGCTTCAAACACCTCCGATGTAGCTTTGGAAACAAATATTCAACCTCAATCCCAAGGTTTGTATTTGATCTCTATTGAACTGCATCTTGGACTTAATAATTATATTCTCAATGCTCTGTAGCAAATATTGTCAATTTTACGACTTCTCGAGAGAAGATTTCAATATTTTGTTCTTGACATTCTCTGAAGTGTTGTATTTTCTTGATAAACTTTTTATTGTACAGACTAAGTACTTTTTTATAGGATAAGGAATAATAGGGATTCATTGTGTAAAATCATAACAAGGGTGTTTGGTTGGCTGTTTAGATTAGTTTAACCAGAAGTTGAGAAGTCAAACTTAGATTTGGCACATGGATTTGCTTTTCACAGACTATGGATCGTGAGTTTACTAGTAACATAGCCAACAAACCAAACATGGTTCACGTAGAACCAAGCTTCTATATCAAATTCATTTGCGTAAACCGTACACAAATTATACAAATTTAAGTGTTGCAATTCTAAGTTCCACTAAGTTTGGAGTTCTGGGAACCAAACAATCCTCAGAGTGTGCATTTTGTTTTTGTTTCACATTTCTCAGTGAAGCTAGGTTTGTCTCATTTGCCACGCAGTCTGGCTTTTGATATCATTTCTATACCTCGAAGCAACTTAACCTGGGTTAGGAGTAGTAGTTCCATCAAAATTTATAACTAACTAGTAAAGAATTGTAACAGCCTAAGCCTACCACTAGCCAATATTATTCTCTTTGGACTTTCTTTTCTGGGCTTCCCCTCAAGGTTTTAAAACGCGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAAGAGTGTTTTGTTCCCCTCTACAATCGATGTGGGATCTTACAATCCACCTCCCTTTGGGGTCCAGCGTCCACATTGGCACTCGTCCGGTGTTTGGCTCTGATACTATTTGTAACAGCCAAAGCTCTAGTAGATATTATCCTCTTTGGTCTTTCCCTTCCAGGCTTCCCCTCAAAGTTTTAAAGCGCTTCTGCTAGGAAGAGATTTCCACACCCTTATAAAGAATGCTTTGTTCCCCTCTCCGATCGACGTGGGATCTCACAAAAATAGCCATGTGAAATGAGTTATCTTCTATTTTCTTACCAAAATATGGGCCAGTTAAGCGTTTTTAGGGCATTAGGACATTGACTGGTGAGGAAGTCTGGTTACTTACTTCAGTCTGCTTGGATTGGCATCAGAGAGTGCCTAGGATCTACCTTGGTGAAGTCATGCAGAGCTTCCTCAGTTCTGTTGACGTTGTCTTATATAGAAGGTTTTCGTTTATGTTCCTTTTTAGCAGAGGCAGATTCTTGCAATTAGAATAAATAATGAAATTCCCAACATTATTCATGGAAAACCTTCTTCGATTTTTGTTGGTGGAAGTTAGTTTGCTGCCAATCAATTTTAGGAATGTATTTCTTTTTTAGCCTTTTCTACAAATTGATTTCTATATGATGTTTCATTGTTTCTGAGTTCAGTGGATTGGAGCACTTTTCTGTAACTTCCATTTGACATGGAGTGCACCCCTTGTTCGCCTCCTTCCCTTTCGTAATAATCCTTTCATTCAACACGATGTTTCTTCCCTCCTCCCGGAATTTGACATCAAGCCAACTCCTTATCTGCTTACGCCCATGGGGAAGAGTACACTGTAATATTCCCCTTTGTCGATCTCTTAATTCCTTGTTTACCTGAGTAGAAATCCTTTCCCCCCCCCCCGTCATATTTGTGCCTTTTAGAGTTGATTTTTCTTTTGAGAGACACTGACCTATTCTCTCAATGTACGACCATACTAACTTGAACTGTTTGCTTGGCTGCATTTCATGGAGGCTACGAGATACCTTCAGTTTATGTCAAAACCTAAACAATTCAAAAGATTCTGTATGAGCGCTTGCATATTCGCTCCTCAAATTGGAATCTCCAATGCATTTAAAACAGATTATTAATAAAAACAGTTTGAAGGATGCTTGCCAATTTCATCTTCAAGCTTCTTCTGATGATGCCTTTAGATCCAGTTGTTAGGTGCATCTAATGAATTTTATCTTTTCGTTTAAGATGAAGCAGAACCGCAAGGAGAAGCTGCAATTTCTGAGAATGCAACAGCTTCTGAGAATCTTCCCACAAATGGGGCAGAATGGGTGGATCTCTTTGTGAGAGAAATGACAAGTGCCTCGAACATGGATGATGCACGAAGCCGTGCTTCAAGAGTTCTTGAGGTTCTTGAAAAGTCCATCTGTGCCCGTGCAAATGCAGAGGCAGCAAATAACTTTCATCAGGTTTTGGAACTTTTACAATTTCTGCTCTTTGTTTATGCACCAATGATCTGCCACTACAATGTTCGTGATTTTTATCTCGTTTATTTAATTTTAGGAAAACAAGATGCTTAGGGAACAAGTGGAAGCTCTTATTCAGGAAAACAATATTCTCAAACGAGCTGTCTCAATCCAGCACGAACGTCAGAAAGAATATGAAGGCGGGAACCAGGAGTTGCAACATCTTAAGGAATTAGTCTCTCAATACCAGGAACAATTGAAAACCCTTGAGGTTGGTTCCATAAATGCTTAAGATCTTGCTTCCTTCCTTACTAAAAATCATTAACACAATACTTCATGGTTTCACGCATACTTATAGTCTGATATCTCTTGCATCTTTTAATGAACTAGGTGAATAACTATGCACTTACAGTGCATCTCAAGCAAGCTCAACAAAGTAGCTCCATTCCAGGTCGTTTCCACCCTGATGTTTTCTAATCAGGCATCGCCACAATGAAACCGCGGTAAACTCGATTCTCACAAGACTTCTATTCTATCAAAATAGTAAGATGATCAACCTGAACTTCAATCAGTAGCATGTTTGTGGGTTCCTCTTTTTTATCTAGAAGGTATAAAAGAGTCGAGGCATCTACTTTTCCATCTTTCAGTACAGTGATTAATTCCTTTTTTTCTTCTTTTTGTTGTTTCTATCCTGTTATTTGACTAAATTTGATTCTCATAGA

mRNA sequence

AACGAACGTTCAGATTCATACAAGCAGCAACATCCACAATGTGAAATGAACCAATAAACAACGAGCACGTGTCATGCATTGGAGAAATTTTCAAAGGCCTTCTTTTTCTTCGTACGACGTGTCGTTTCTGAATTGCTTGTTCTTTTAATCTCGTTGGTGAGAATATGCAGATGACGATCGGACTCTTCGTAGCCATGAACGAAGATGAGCCGAAGTTTTAGAGCTTCAAATGCTAAGAATTTCTATCTTTCCTGATTCGTTTTCCATCTGAAATCCCTTGGAATTGAGTTTGTTGTAATTAATTTTGTTTTTGGTGGATGAGATCTTGAGGATTTTATCCTAATTCGATCGTTTTCTCTGCGTTTTTTTTCTTCTATTGAATTGGAATATTGTTGAAGATGTTTTAGTTTGGATCCGGTGGTTTTGCTGCATGAATTGGATTGAAGGTTTGGGTGCGGATCGAGCACTTGAAGAATAGAGGAAGCTGAGCAGCGGCGCTGAAACATGTCTGCCATCGTGTGCGGGAAGAGATCCTTATTTGAAGACCTGCCTCCGCATCCCGTCTCTAAAAGAATTCGTTGTTCATCTTCTTCGCCTGTGCGGTTTTCGCCTCCGAGGTCATCCAATCAATCTGTGTTTCCGTTCCCCCAGACGTCCTCCTCACAATCGGCTCATTTAGTCGATTATCTCTGCGAAAATTTTCCTGATATGGATAAGCAGCTTCTAGAGAGGGTACTTGAAGAATGTGGTGATGATCTCGATTTAGCCATTAGAAGTTTGAACCAGCTTCATTTGGGTTATAATGACAGAAACTTGGGCAATGCTTCAAACACCTCCGATGTAGCTTTGGAAACAAATATTCAACCTCAATCCCAAGATGAAGCAGAACCGCAAGGAGAAGCTGCAATTTCTGAGAATGCAACAGCTTCTGAGAATCTTCCCACAAATGGGGCAGAATGGGTGGATCTCTTTGTGAGAGAAATGACAAGTGCCTCGAACATGGATGATGCACGAAGCCGTGCTTCAAGAGTTCTTGAGGTTCTTGAAAAGTCCATCTGTGCCCGTGCAAATGCAGAGGCAGCAAATAACTTTCATCAGGAAAACAAGATGCTTAGGGAACAAGTGGAAGCTCTTATTCAGGAAAACAATATTCTCAAACGAGCTGTCTCAATCCAGCACGAACGTCAGAAAGAATATGAAGGCGGGAACCAGGAGTTGCAACATCTTAAGGAATTAGTCTCTCAATACCAGGAACAATTGAAAACCCTTGAGGTGAATAACTATGCACTTACAGTGCATCTCAAGCAAGCTCAACAAAGTAGCTCCATTCCAGGTCGTTTCCACCCTGATGTTTTCTAATCAGGCATCGCCACAATGAAACCGCGGTAAACTCGATTCTCACAAGACTTCTATTCTATCAAAATAGTAAGATGATCAACCTGAACTTCAATCAGTAGCATGTTTGTGGGTTCCTCTTTTTTATCTAGAAGGTATAAAAGAGTCGAGGCATCTACTTTTCCATCTTTCAGTACAGTGATTAATTCCTTTTTTTCTTCTTTTTGTTGTTTCTATCCTGTTATTTGACTAAATTTGATTCTCATAGA

Coding sequence (CDS)

ATGTCTGCCATCGTGTGCGGGAAGAGATCCTTATTTGAAGACCTGCCTCCGCATCCCGTCTCTAAAAGAATTCGTTGTTCATCTTCTTCGCCTGTGCGGTTTTCGCCTCCGAGGTCATCCAATCAATCTGTGTTTCCGTTCCCCCAGACGTCCTCCTCACAATCGGCTCATTTAGTCGATTATCTCTGCGAAAATTTTCCTGATATGGATAAGCAGCTTCTAGAGAGGGTACTTGAAGAATGTGGTGATGATCTCGATTTAGCCATTAGAAGTTTGAACCAGCTTCATTTGGGTTATAATGACAGAAACTTGGGCAATGCTTCAAACACCTCCGATGTAGCTTTGGAAACAAATATTCAACCTCAATCCCAAGATGAAGCAGAACCGCAAGGAGAAGCTGCAATTTCTGAGAATGCAACAGCTTCTGAGAATCTTCCCACAAATGGGGCAGAATGGGTGGATCTCTTTGTGAGAGAAATGACAAGTGCCTCGAACATGGATGATGCACGAAGCCGTGCTTCAAGAGTTCTTGAGGTTCTTGAAAAGTCCATCTGTGCCCGTGCAAATGCAGAGGCAGCAAATAACTTTCATCAGGAAAACAAGATGCTTAGGGAACAAGTGGAAGCTCTTATTCAGGAAAACAATATTCTCAAACGAGCTGTCTCAATCCAGCACGAACGTCAGAAAGAATATGAAGGCGGGAACCAGGAGTTGCAACATCTTAAGGAATTAGTCTCTCAATACCAGGAACAATTGAAAACCCTTGAGGTGAATAACTATGCACTTACAGTGCATCTCAAGCAAGCTCAACAAAGTAGCTCCATTCCAGGTCGTTTCCACCCTGATGTTTTCTAA

Protein sequence

MSAIVCGKRSLFEDLPPHPVSKRIRCSSSSPVRFSPPRSSNQSVFPFPQTSSSQSAHLVDYLCENFPDMDKQLLERVLEECGDDLDLAIRSLNQLHLGYNDRNLGNASNTSDVALETNIQPQSQDEAEPQGEAAISENATASENLPTNGAEWVDLFVREMTSASNMDDARSRASRVLEVLEKSICARANAEAANNFHQENKMLREQVEALIQENNILKRAVSIQHERQKEYEGGNQELQHLKELVSQYQEQLKTLEVNNYALTVHLKQAQQSSSIPGRFHPDVF
Homology
[Close]
BLAST of CmaCh05G012740 vs. TAIR 10
Match: AT5G32440.1 (Ubiquitin system component Cue protein )

HSP 1 Score: 283.5 bits (724), Expect = 1.9e-76
Identity = 166/288 (57.64%), Postives = 207/288 (71.88%), Query Frame = 0 

Query: 1   MSAIVCGKRSLFEDL--PPHPVSKRIRC-SSSSPVRFSPPRSSNQSVFPFPQTSSSQSAH 60
           MSAIVCGKRSLFEDL     PVSK++RC SSSS  RFSP         P P +SS     
Sbjct: 1   MSAIVCGKRSLFEDLAAASPPVSKKLRCFSSSSSSRFSP---------PIPPSSSL---- 60

Query: 61  LVDYLCENFPDMDKQLLERVLEECGDDLDLAIRSLNQLHLGYNDRNLGNASNTSDVAL-E 120
           L+D+L   FPDMDKQ+LER +EECGDDLD AIR LNQL L   ++N  +A+N S V + E
Sbjct: 61  LLDHLAAIFPDMDKQILERAIEECGDDLDSAIRCLNQLRLESANKNSDSATNQSPVVIQE 120

Query: 121 TNIQPQSQDEAEPQGEAAISENATASENLPTNGAEWVDLFVREMTSASNMDDARSRASRV 180
            N++PQ Q  A+ +              L  +G EWV+LFVREM +AS+M DA++RA+R 
Sbjct: 121 PNVEPQQQGSAKEEPNV-----------LNLDGTEWVELFVREMMNASDMKDAKARAARA 180

Query: 181 LEVLEKSICARANAEAANNFHQENKMLREQVEALIQENNILKRAVSIQHERQKEYEGGNQ 240
           LE LEKSI AR   +A  N  QEN ML++Q+EA++QEN++LKRAV  Q +RQ+E E  +Q
Sbjct: 181 LEALEKSINARTGTDAMQNLQQENMMLKQQLEAIVQENSLLKRAVVTQQKRQRESEDQSQ 240

Query: 241 ELQHLKELVSQYQEQLKTLEVNNYALTVHLKQAQQSSSIPGRFHPDVF 285
           ELQHL++LV+QYQEQL+TLEVNNYALT+HLKQAQQ+SSIPGR+HPDVF
Sbjct: 241 ELQHLRQLVTQYQEQLRTLEVNNYALTLHLKQAQQNSSIPGRYHPDVF 264

[Close]
BLAST of CmaCh05G012740 vs. TAIR 10
Match: AT5G32440.3 (Ubiquitin system component Cue protein )

HSP 1 Score: 282.7 bits (722), Expect = 3.2e-76
Identity = 168/288 (58.33%), Postives = 208/288 (72.22%), Query Frame = 0 

Query: 1   MSAIVCGKRSLFEDL--PPHPVSKRIRC-SSSSPVRFSPPRSSNQSVFPFPQTSSSQSAH 60
           MSAIVCGKRSLFEDL     PVSK++RC SSSS  RFSP         P P +SS     
Sbjct: 1   MSAIVCGKRSLFEDLAAASPPVSKKLRCFSSSSSSRFSP---------PIPPSSSL---- 60

Query: 61  LVDYLCENFPDMDKQLLERVLEECGDDLDLAIRSLNQLHLGYNDRNLGNASNTSDVAL-E 120
           L+D+L   FPDMDKQ+LER +EECGDDLD AIR LNQL L   ++N  +A+N S V + E
Sbjct: 61  LLDHLAAIFPDMDKQILERAIEECGDDLDSAIRCLNQLRLESANKNSDSATNQSPVVIQE 120

Query: 121 TNIQPQSQDEAEPQGEAAISENATASENLPTNGAEWVDLFVREMTSASNMDDARSRASRV 180
            N++PQ       QG +A  E       L  +G EWV+LFVREM +AS+M DA++RA+R 
Sbjct: 121 PNVEPQQ------QGRSAKEE----PNVLNLDGTEWVELFVREMMNASDMKDAKARAARA 180

Query: 181 LEVLEKSICARANAEAANNFHQENKMLREQVEALIQENNILKRAVSIQHERQKEYEGGNQ 240
           LE LEKSI AR   +A  N  QEN ML++Q+EA++QEN++LKRAV  Q +RQ+E E  +Q
Sbjct: 181 LEALEKSINARTGTDAMQNLQQENMMLKQQLEAIVQENSLLKRAVVTQQKRQRESEDQSQ 240

Query: 241 ELQHLKELVSQYQEQLKTLEVNNYALTVHLKQAQQSSSIPGRFHPDVF 285
           ELQHL++LV+QYQEQL+TLEVNNYALT+HLKQAQQ+SSIPGR+HPDVF
Sbjct: 241 ELQHLRQLVTQYQEQLRTLEVNNYALTLHLKQAQQNSSIPGRYHPDVF 265

[Close]
BLAST of CmaCh05G012740 vs. TAIR 10
Match: AT1G80040.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 185.7 bits (470), Expect = 5.3e-47
Identity = 118/287 (41.11%), Postives = 163/287 (56.79%), Query Frame = 0 

Query: 1   MSAIVCG-KRSLFEDLPPHPVSKRIRC--SSSSPVRFSPPRSSNQSVFPFPQTSSSQSAH 60
           MSA+ CG KRS F+D    P SKR RC   S+SP+  SPP SS                 
Sbjct: 1   MSAVYCGTKRSYFDDNSSPPSSKRFRCFSPSNSPIWSSPPSSS----------------- 60

Query: 61  LVDYLCENFPDMDKQLLERVLEECGDDLDLAIRSLNQLHLGYNDRNLGNASNTSDVALET 120
            +D L   FP ++  +L + LE+ G D + A++SL                         
Sbjct: 61  -LDQLHSAFPHIELTVLVKALEDNGSDFNAAMKSLYSF---------------------A 120

Query: 121 NIQPQSQDEAEPQGEAAISENATASENLPTNGAEWVDLFVREMTSASNMDDARSRASRVL 180
           + + +  +E    G A    +A    N PT+G +WV+L VRE+  +S  DDA+ RA+RVL
Sbjct: 121 SSEEKKAEELAAGGAATQETDAVCGGNPPTSGDDWVELLVREVLQSSGTDDAKVRAARVL 180

Query: 181 EVLEKSICARANAEAANNFHQENKMLREQVEALIQENNILKRAVSIQHERQKEYEGGNQE 240
           E LEK + ARA  EA N F +E   +++QVE L+++N +LKRAV+IQHERQK  E  N +
Sbjct: 181 EALEKMLSARAREEAGNKFQEEKVAVQQQVETLVKDNTVLKRAVAIQHERQKALEDANHQ 240

Query: 241 LQHLKELVSQYQEQLKTLEVNNYALTVHLKQAQQSSSIPGRFHPDVF 285
           L  LK+LV QYQE+L+ LEVNNYAL + L+Q +  +S+P RF+PDVF
Sbjct: 241 LGLLKQLVPQYQEKLRNLEVNNYALRMQLQQVEHGNSMPARFNPDVF 248

[Close]
BLAST of CmaCh05G012740 vs. TAIR 10
Match: AT1G80040.3 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Ubiquitin system component Cue protein (TAIR:AT5G32440.1). )

HSP 1 Score: 183.0 bits (463), Expect = 3.5e-46
Identity = 119/290 (41.03%), Postives = 165/290 (56.90%), Query Frame = 0 

Query: 1   MSAIVCG-KRSLFEDLPPHPVSKRIRC--SSSSPVRFSPPRSS---NQSVFPFPQTSSSQ 60
           MSA+ CG KRS F+D    P SKR RC   S+SP+  SPP SS     S FP  + + + 
Sbjct: 1   MSAVYCGTKRSYFDDNSSPPSSKRFRCFSPSNSPIWSSPPSSSLDQLHSAFPHIELTVAS 60

Query: 61  SAHLVDYLCENFPDMDKQLLERVLEECGDDLDLAIRSLNQLHLGYNDRNLGNASNTSDVA 120
             H+             Q+L + LE+ G D + A++SL                      
Sbjct: 61  KIHV----------SVAQVLVKALEDNGSDFNAAMKSLYSF------------------- 120

Query: 121 LETNIQPQSQDEAEPQGEAAISENATASENLPTNGAEWVDLFVREMTSASNMDDARSRAS 180
              + + +  +E    G A    +A    N PT+G +WV+L VRE+  +S  DDA+ RA+
Sbjct: 121 --ASSEEKKAEELAAGGAATQETDAVCGGNPPTSGDDWVELLVREVLQSSGTDDAKVRAA 180

Query: 181 RVLEVLEKSICARANAEAANNFHQENKMLREQVEALIQENNILKRAVSIQHERQKEYEGG 240
           RVLE LEK + ARA  EA N F +E   +++QVE L+++N +LKRAV+IQHERQK  E  
Sbjct: 181 RVLEALEKMLSARAREEAGNKFQEEKVAVQQQVETLVKDNTVLKRAVAIQHERQKALEDA 240

Query: 241 NQELQHLKELVSQYQEQLKTLEVNNYALTVHLKQAQQSSSIPGRFHPDVF 285
           N +L  LK+LV QYQE+L+ LEVNNYAL + L+Q +  +S+P RF+PDVF
Sbjct: 241 NHQLGLLKQLVPQYQEKLRNLEVNNYALRMQLQQVEHGNSMPARFNPDVF 259

[Close]
BLAST of CmaCh05G012740 vs. TAIR 10
Match: AT5G32440.2 (Ubiquitin system component Cue protein )

HSP 1 Score: 161.8 bits (408), Expect = 8.3e-40
Identity = 104/203 (51.23%), Postives = 129/203 (63.55%), Query Frame = 0 

Query: 1   MSAIVCGKRSLFEDL--PPHPVSKRIRC-SSSSPVRFSPPRSSNQSVFPFPQTSSSQSAH 60
           MSAIVCGKRSLFEDL     PVSK++RC SSSS  RFSP         P P +SS     
Sbjct: 1   MSAIVCGKRSLFEDLAAASPPVSKKLRCFSSSSSSRFSP---------PIPPSSSL---- 60

Query: 61  LVDYLCENFPDMDKQLLERVLEECGDDLDLAIRSLNQLHLGYNDRNLGNASNTSDVAL-E 120
           L+D+L   FPDMDKQ+LER +EECGDDLD AIR LNQL L   ++N  +A+N S V + E
Sbjct: 61  LLDHLAAIFPDMDKQILERAIEECGDDLDSAIRCLNQLRLESANKNSDSATNQSPVVIQE 120

Query: 121 TNIQPQSQDEAEPQGEAAISENATASENLPTNGAEWVDLFVREMTSASNMDDARSRASRV 180
            N++PQ Q  A+ +              L  +G EWV+LFVREM +AS+M DA++RA+R 
Sbjct: 121 PNVEPQQQGSAKEEPNV-----------LNLDGTEWVELFVREMMNASDMKDAKARAARA 179

Query: 181 LEVLEKSICARANAEAANNFHQE 200
           LE LEKSI AR   +A  N  Q+
Sbjct: 181 LEALEKSINARTGTDAMQNLQQK 179

The following BLAST results are available for this feature:
BLAST of CmaCh05G012740 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh05G012740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G32440.11.9e-7657.64Ubiquitin system component Cue protein [more]
AT5G32440.33.2e-7658.33Ubiquitin system component Cue protein [more]
AT1G80040.15.3e-4741.11FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT1G80040.33.5e-4641.03FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT5G32440.28.3e-4051.23Ubiquitin system component Cue protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 193..220
NoneNo IPR availableCOILSCoilCoilcoord: 231..258
NoneNo IPR availableGENE3D1.10.8.10coord: 49..97
e-value: 6.3E-7
score: 30.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..51
NoneNo IPR availablePANTHERPTHR31245UBIQUITIN SYSTEM COMPONENT CUE PROTEINcoord: 1..284
NoneNo IPR availablePANTHERPTHR31245:SF20F18B13.13 PROTEINcoord: 1..284
NoneNo IPR availableCDDcd14279CUEcoord: 58..92
e-value: 4.20289E-8
score: 46.3073
IPR003892Ubiquitin system component CUEPROSITEPS51140CUEcoord: 54..97
score: 11.956326
IPR009060UBA-like superfamilySUPERFAMILY46934UBA-likecoord: 51..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G012740.1CmaCh05G012740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0043130 ubiquitin binding
molecular_function GO:0005515 protein binding