CmaCh05G012450 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G012450
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Peptidyl-prolyl cis-trans isomerase
Location	Cma_Chr05: 9561221 .. 9563919 (-)
RNA-Seq Expression	CmaCh05G012450
Synteny	CmaCh05G012450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCTTCTTCACTCATTTCCCGATGATGGCCTTTTCTCTCGTTTCCACCACCTCCTCCTCCTCTGCTTCTGCCGCCACCGCCGTGCTATTACCTCCACATCACCACCACCGCCGTCGCCCTGCCGGAGACATTGCACTTCCTCGTCGGTCCCTCCTCCTTCTCTCCACGTCCCTCTCTCTCTCCACCGCTGTCGATCCACCTCCCTCCCCGGCTTCCCCTTCGCCGAACACCACTATCACCGACCGCGTCTTCCTCGACTTCAGCATTTGCCCAACCAACTTCCTTCCCAACCGTGAATCCGCCGATGATGGCGGCGATTCCATCCTCTGCTCCGATTCCGCCCTCCTCGGTCGCCTCGTTCTCGGCCTCTACGGCCACCTGGTTCCAATCACCGTCGCCAATTTCAAATCCATGTGTACCGGATCCTGCGGCTCCTCCTATAAGGGCACTTTGGTCCACAAAATCTTCCCAGGCCAATTCTTCCTCGCCGGTCGACAGGGCCGCCGCGACAAAGGAGCAGTCCGGCCACCGCAACAATTACCGAGAAATACGGAGACGGTGAAGTCCGATTCGTTCTTGCTTTCACATTCGAGAGGCGGCATTGTTTCATTGTGCCTTTCGGAGAACGACGACGACGACGAATTGAAATTGGATCCCAATTATCACAATGTGGAATTCTTGATCACCACCGGCCCTGGCCCCTGCCCCCAGCTTGATAACGAGAACATTGTCTTCGGAACTGTGCTTGAAGGTACAAATTCAAACTGATCTCTCACAATTTCCTCTTTACATTTTAAATTTGATCCTTATGATTAGTTTTAGAAGTTTCAATTAGTCAGTTTTATAATCCTGCATGCCATTTCGAATCCAATCCATTTAACACATCATTAGCTCACAAGGGACGTATATGTTCGAGAATTACTGGGAGACTTTCGTTAGTTGATCATGGGTTTATAAGTAAAGTCCATTGGTATAGAAAAGTCAAAGTTGATCTTATGCTTAAAGTAGACAATATCGTACCATTGTTGAGGATCGTGATTTCTAATATGGTATTAGAGCCATGTCCTTAATTTATTCATGTCAATAGAACTCTCAACTGTGGAAAAAAGAAATTGCTAGCATCGAAGGTGATTAATGTGTCAAACAAAGGTGATTAATGTGTCAAACAAAAGTGACTAATGTGTCAAACAAAAGTGTACTTTGTTCGAGGGTTGAGGAGTCGAGCCTCGAATAAGGGGAGCTTGTTCAAGGGCTACATAAACCTTAGGAGAGGCGGCTCTACAGTGTACTTTGTTTGAGGGGAGGATGGTTGGGAATGAGTCACACCTTGGCTAATTTAGGGGTTGATCATGAGTTTATAATAAGAAATATATCTCCATTGGTTTGGGGAAGCTCAAAGCAAACCACTATTATAGAGAGCTGTGATTCTTAATAGTATTCGAGAGTAAAGTTTAATCATATTTATCAATTTCAGATCAAATTGTAAGAAATAAACTTAAGTTTTAAAACTTCTCCAAATTAGAGCTAAGCAAAAAGAGCTGAAATTAGTACAAAAGATTTTTGATATCTGTGTAAAATTTGGGAGTTTCAGGTCTGGATGTTGTGGCAGCCATATCCTCAACTCCAACATACAAGCCATCTGAGAGAATTAGGCAATTCAATGATTTGGCTAAGTTCTTGGGAGATGAAAGGGCTCAAAATGCAAGAACAATATGGAACAGACCTCTCCAAACCGTTTATATCAGTGACTGTGGAGAGCTCAAAGTTGCAAAGCCTTCACTGTCCCCAACTCTGCCTTAAACACAGCCCCTTGCCCTTTGTTATCTCTCAAGGTTCCATTTCTTTTCCTTCTCATATTTCTTTGTGTTCTTCTGTGAAAATTGGACATTCCATCCCCATGTTTTTGTTTTCTCACATGAACAAAGGGCTAACCTGGCCTCTGTTTTTGTTTTCTCACATGGACAAAGGGCTAACCTGGCCTCTGTTTTTGTTTTGACCACTGTCTGTGCTCAAACCAATCGGGAATCAAATTTTGATGTCAATACTGTTGACGTTTTATATGCTAAAGAAAGCACAAATTGGTTGTTGTTCACTCATTGTTATTGTTTTTGTCCGGTTCGTTATATGTGAGATCTCATATCGGTTGGGGAGGGGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCTTTAACCGACGTGTTTTAAAACCGTGAGGTTGACGATGATACGAAACGCACCAAAGCGGACAATATCTGCTAGCGTTGGACTTGGGCTGTTACAAAATGGTATCAGAGCCAGACACTGGGGCGGTGTGTTAGTGAGGACACTGGGCCTCCAAGAGGGTGGATTGTGAGTTTTCATATTGGTTGGAGTGGAGAACGAAACATTCTTTATAAGACTGTGGAAACTTCTCCCTAATAGATGTGTTTTAAAACCGTGAAACTGACAACGATATGAAATGGGCCAAAACAGACAATATCTACTGGAGGTGGGCTTGGACTGTTACCTTTTATATCCAATTTTTTAGAAGCAAATGTGTATCTAATGCTTTGTTGGAGTTATTTACCTAAGTTTCCAACCCATGTTCAACAAATGTTAGAATTATATTAAATTTGTTTAAATACTGTTTAATGTTTTTGACATAGTTTCCAGCACGAATATGAATATGAATATGAACACGAACACGAACAC

mRNA sequence

ATGGTCCTTCTTCACTCATTTCCCGATGATGGCCTTTTCTCTCGTTTCCACCACCTCCTCCTCCTCTGCTTCTGCCGCCACCGCCGTGCTATTACCTCCACATCACCACCACCGCCGTCGCCCTGCCGGAGACATTGCACTTCCTCGTCGGTCCCTCCTCCTTCTCTCCACGTCCCTCTCTCTCTCCACCGCTGTCGATCCACCTCCCTCCCCGGCTTCCCCTTCGCCGAACACCACTATCACCGACCGCGTCTTCCTCGACTTCAGCATTTGCCCAACCAACTTCCTTCCCAACCGTGAATCCGCCGATGATGGCGGCGATTCCATCCTCTGCTCCGATTCCGCCCTCCTCGGTCGCCTCGTTCTCGGCCTCTACGGCCACCTGGTTCCAATCACCGTCGCCAATTTCAAATCCATGTGTACCGGATCCTGCGGCTCCTCCTATAAGGGCACTTTGGTCCACAAAATCTTCCCAGGCCAATTCTTCCTCGCCGGTCGACAGGGCCGCCGCGACAAAGGAGCAGTCCGGCCACCGCAACAATTACCGAGAAATACGGAGACGGTGAAGTCCGATTCGTTCTTGCTTTCACATTCGAGAGGCGGCATTGTTTCATTGTGCCTTTCGGAGAACGACGACGACGACGAATTGAAATTGGATCCCAATTATCACAATGTGGAATTCTTGATCACCACCGGCCCTGGCCCCTGCCCCCAGCTTGATAACGAGAACATTGTCTTCGGAACTGTGCTTGAAGGTCTGGATGTTGTGGCAGCCATATCCTCAACTCCAACATACAAGCCATCTGAGAGAATTAGGCAATTCAATGATTTGGCTAAGTTCTTGGGAGATGAAAGGGCTCAAAATGCAAGAACAATATGGAACAGACCTCTCCAAACCGTTTATATCAGTGACTGTGGAGAGCTCAAAGTTGCAAAGCCTTCACTGTCCCCAACTCTGCCTTAAACACAGCCCCTTGCCCTTTGTTATCTCTCAAGGTTCCATTTCTTTTCCTTCTCATATTTCTTTGTGTTCTTCTGTGAAAATTGGACATTCCATCCCCATGTTTTTGTTTTCTCACATGAACAAAGGGCTAACCTGGCCTCTGTTTTTGTTTTCTCACATGGACAAAGGGCTAACCTGGCCTCTGTTTTTGTTTTGACCACTGTCTGTGCTCAAACCAATCGGGAATCAAATTTTGATGTCAATACTGTTGACGTTTTATATGCTAAAGAAAGCACAAATTGGTTGTTGTTCACTCATTGTTATTGTTTTTGTCCGGTTCGTTATATGTGAGATCTCATATCGGTTGGGGAGGGGAACAAAACATTCCTTATAAGGGTGTGGAAACCTCTCTTTAACCGACGTGTTTTAAAACCGTGAGGTTGACGATGATACGAAACGCACCAAAGCGGACAATATCTGCTAGCGTTGGACTTGGGCTGTTACAAAATGGTATCAGAGCCAGACACTGGGGCGGTGTGTTAGTGAGGACACTGGGCCTCCAAGAGGGTGGATTGTGAGTTTTCATATTGGTTGGAGTGGAGAACGAAACATTCTTTATAAGACTGTGGAAACTTCTCCCTAATAGATGTGTTTTAAAACCGTGAAACTGACAACGATATGAAATGGGCCAAAACAGACAATATCTACTGGAGGTGGGCTTGGACTGTTACCTTTTATATCCAATTTTTTAGAAGCAAATGTGTATCTAATGCTTTGTTGGAGTTATTTACCTAAGTTTCCAACCCATGTTCAACAAATGTTAGAATTATATTAAATTTGTTTAAATACTGTTTAATGTTTTTGACATAGTTTCCAGCACGAATATGAATATGAATATGAACACGAACACGAACAC

Coding sequence (CDS)

ATGATGGCCTTTTCTCTCGTTTCCACCACCTCCTCCTCCTCTGCTTCTGCCGCCACCGCCGTGCTATTACCTCCACATCACCACCACCGCCGTCGCCCTGCCGGAGACATTGCACTTCCTCGTCGGTCCCTCCTCCTTCTCTCCACGTCCCTCTCTCTCTCCACCGCTGTCGATCCACCTCCCTCCCCGGCTTCCCCTTCGCCGAACACCACTATCACCGACCGCGTCTTCCTCGACTTCAGCATTTGCCCAACCAACTTCCTTCCCAACCGTGAATCCGCCGATGATGGCGGCGATTCCATCCTCTGCTCCGATTCCGCCCTCCTCGGTCGCCTCGTTCTCGGCCTCTACGGCCACCTGGTTCCAATCACCGTCGCCAATTTCAAATCCATGTGTACCGGATCCTGCGGCTCCTCCTATAAGGGCACTTTGGTCCACAAAATCTTCCCAGGCCAATTCTTCCTCGCCGGTCGACAGGGCCGCCGCGACAAAGGAGCAGTCCGGCCACCGCAACAATTACCGAGAAATACGGAGACGGTGAAGTCCGATTCGTTCTTGCTTTCACATTCGAGAGGCGGCATTGTTTCATTGTGCCTTTCGGAGAACGACGACGACGACGAATTGAAATTGGATCCCAATTATCACAATGTGGAATTCTTGATCACCACCGGCCCTGGCCCCTGCCCCCAGCTTGATAACGAGAACATTGTCTTCGGAACTGTGCTTGAAGGTCTGGATGTTGTGGCAGCCATATCCTCAACTCCAACATACAAGCCATCTGAGAGAATTAGGCAATTCAATGATTTGGCTAAGTTCTTGGGAGATGAAAGGGCTCAAAATGCAAGAACAATATGGAACAGACCTCTCCAAACCGTTTATATCAGTGACTGTGGAGAGCTCAAAGTTGCAAAGCCTTCACTGTCCCCAACTCTGCCTTAA

Protein sequence

MMAFSLVSTTSSSSASAATAVLLPPHHHHRRRPAGDIALPRRSLLLLSTSLSLSTAVDPPPSPASPSPNTTITDRVFLDFSICPTNFLPNRESADDGGDSILCSDSALLGRLVLGLYGHLVPITVANFKSMCTGSCGSSYKGTLVHKIFPGQFFLAGRQGRRDKGAVRPPQQLPRNTETVKSDSFLLSHSRGGIVSLCLSENDDDDELKLDPNYHNVEFLITTGPGPCPQLDNENIVFGTVLEGLDVVAAISSTPTYKPSERIRQFNDLAKFLGDERAQNARTIWNRPLQTVYISDCGELKVAKPSLSPTLP

Homology

[Close]

BLAST of CmaCh05G012450 vs. ExPASy Swiss-Prot
Match: O65220 (Peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CYP28 PE=1 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.6e-97
Identity = 189/299 (63.21%), Postives = 221/299 (73.91%), Query Frame = 0


Query: 17  AATAVLLPPHHHHRRRPAGDIALPRRSLLLLSTSLSLSTAVDPPPSPASPSPNTTITDRV 76
           A++++L+PP             L RR+LLL +T       V PPP    PSP+ TITDRV
Sbjct: 2   ASSSILIPP------------ILTRRNLLLSTT----IATVTPPPPAKPPSPDITITDRV 61

Query: 77  FLDFSICPTNFLPNRESADDGGDSILCSDSALLGRLVLGLYGHLVPITVANFKSMCTGSC 136
           FLDFS+CPT F    + +     +  CSDS  LGR+VLGLYG  VPITV+ FK MCT S 
Sbjct: 62  FLDFSLCPTYF--RSDPSATLSSTTPCSDSTPLGRVVLGLYGRHVPITVSTFKRMCTSS- 121

Query: 137 GSSYKGTLVHKIFPGQFFLAGRQ--GRRDKGAV-RPPQQLPRNTETVKSDSFLLSHSRGG 196
            +SYK T VHKIFPGQ+FLAGRQ  GRRD   V    + LPRNT+ V S +FLL H+R G
Sbjct: 122 STSYKNTPVHKIFPGQYFLAGRQGGGRRDTAEVGYSLRDLPRNTDVVNSKAFLLPHARAG 181

Query: 197 IVSLCLSENDDDDELKLDPNYHNVEFLITTGPGPCPQLDNENIVFGTVLEGLDVVAAISS 256
           +VSLCLSENDDDD+++LDP+Y NVEFLITTGPGP PQLD  NIVFGTVLEGLDVV +ISS
Sbjct: 182 VVSLCLSENDDDDDIRLDPDYRNVEFLITTGPGPSPQLDGGNIVFGTVLEGLDVVTSISS 241

Query: 257 TPTYKPSERIRQFNDLAKFLGDERAQNARTIWNRPLQTVYISDCGELKVAKPSLSPTLP 313
            PTYKPSE I+QFND A+FLGDERAQNAR++WNRPL+TV+IS CGELKV  PSLSPTLP
Sbjct: 242 IPTYKPSENIKQFNDFAEFLGDERAQNARSLWNRPLKTVFISGCGELKVTNPSLSPTLP 281

[Close]

BLAST of CmaCh05G012450 vs. ExPASy Swiss-Prot
Match: Q9ASS6 (Photosynthetic NDH subunit of lumenal location 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL5 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.0e-16
Identity = 69/237 (29.11%), Postives = 106/237 (44.73%), Query Frame = 0


Query: 68  PNTTITDRVFLDFSICPTNFLPNRESADDGGDSILCSDSALLGRLVLGLYGHLVPITVAN 127
           P + IT +V+ D S+               G+ +      L GR+V+GLYG  VP TV N
Sbjct: 84  PQSKITHKVYFDISV---------------GNPV----GKLAGRIVIGLYGDDVPQTVEN 143

Query: 128 FKSMCTGSCGSSYKGTLVHKIFPGQFFLAGRQGRRDKGAVRPPQQLPRNTETVKSDSFLL 187
           F+++CTG  G  YKG+  H++    F + G  G  +KG     + +     T K ++F L
Sbjct: 144 FRALCTGEKGFGYKGSTFHRVI-RDFMIQG--GDFEKGNGTGGKSV--YGRTFKDENFKL 203

Query: 188 SHSRGGIVSLCLSENDDDDELKLDPNYHNVEFLITTGPGPCPQLDNENIVFGTVLEGLDV 247
           SH   G++S+              PN +  +F I T       LD  ++VFG V+EG++V
Sbjct: 204 SHVGPGVLSMA----------NAGPNTNGSQFFICT--IKTSWLDGRHVVFGQVIEGMEV 258

Query: 248 VAAISSTPTYKPSERIRQFNDLAKFLGDERAQNARTIWNRPLQTVYISDCGELKVAK 305
           V  I    T +               GD           RP + V I+DCG+L +++
Sbjct: 264 VKLIEEQETDR---------------GD-----------RPRKKVVIADCGQLPMSE 258

[Close]

BLAST of CmaCh05G012450 vs. ExPASy Swiss-Prot
Match: Q41651 (Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba OX=3906 PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.2e-16
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = 0


Query: 72  ITDRVFLDFSICPTNFLPNRESADDGGDSILCSDSALLGRLVLGLYGHLVPITVANFKSM 131
           +T ++F D  I              GG+S         GR+V+GL+G  VP TV NFK++
Sbjct: 80  VTSKIFFDIEI--------------GGES--------AGRIVIGLFGDAVPKTVENFKTL 139

Query: 132 CTGSCGSSYKGTLVHKIFPGQFFLAGRQGRRDKGAVRPPQQLPRNTETVKSDSFLLSHSR 191
            TG+ G  Y+G+  H+I P  F + G       G       +       + +SF L H  
Sbjct: 140 STGAKGYGYQGSFFHRIIP-NFMIQGGDFTEGNGT----GGVSIYGSKFEDESFDLKHVG 199

Query: 192 GGIVSLCLSENDDDDELKLDPNYHNVEFLITTGPGPCPQLDNENIVFGTVLEGLDVVAAI 251
            G++S+              PN +  +F I T   P P LDN ++VFG V+EGLDVV  +
Sbjct: 200 PGVLSMA----------NAGPNTNGSQFFICT--VPTPWLDNRHVVFGHVIEGLDVVKQL 227

Query: 252 SSTPTYK 259
            S  T K
Sbjct: 260 ESQETSK 227

[Close]

BLAST of CmaCh05G012450 vs. ExPASy Swiss-Prot
Match: Q01490 (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) OX=50059 GN=CYPB PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.2e-16
Identity = 64/195 (32.82%), Postives = 88/195 (45.13%), Query Frame = 0


Query: 109 LGRLVLGLYGHLVPITVANFKSMCTGSCGSSYKGTLVHKIFPGQFFLAGRQGRRDKGAVR 168
           LGR+VLGLYG +VP TV NF+++ TG  G  YK +  H++    F + G    R  G   
Sbjct: 43  LGRIVLGLYGEVVPKTVENFRALATGEKGYGYKNSKFHRVIK-DFMIQGGDFTRGDGTGG 102

Query: 169 PPQQLPRNTETVKSDSFLLSHSRGGIVSLCLSENDDDDELKLDPNYHNVEFLITTGPGPC 228
                    E    ++F L H+  GI+S+  +  D +            +F ITT     
Sbjct: 103 KSIY----GERFADENFKLRHTGPGILSMANAGRDTNGS----------QFFITT--VTT 162

Query: 229 PQLDNENIVFGTVLEGLDVVAAISSTPTYKPSERIRQFNDLAKFLGDERAQNARTIWNRP 288
             LD  ++VFG V+EG+DVV AI +T T                 GD           RP
Sbjct: 163 SWLDGRHVVFGKVIEGMDVVTAIETTKTLP---------------GD-----------RP 194

Query: 289 LQTVYISDCGELKVA 304
              V I+DCGEL V+
Sbjct: 223 ATPVIIADCGELPVS 194

[Close]

BLAST of CmaCh05G012450 vs. ExPASy Swiss-Prot
Match: P18253 (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ppi1 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-15
Identity = 52/156 (33.33%), Postives = 77/156 (49.36%), Query Frame = 0


Query: 109 LGRLVLGLYGHLVPITVANFKSMCTGSCGSSYKGTLVHKIFPGQFFLAGRQGRRDKGAVR 168
           LGR+V  L+  +VP T ANF+++CTG  G  Y G+  H++ P QF L G    R  G   
Sbjct: 15  LGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVIP-QFMLQGGDFTRGNGTGG 74

Query: 169 PPQQLPRNTETVKSDSFLLSHSRGGIVSLCLSENDDDDELKLDPNYHNVEFLITTGPGPC 228
                    E    ++F L H++ G++S+              PN +  +F ITT     
Sbjct: 75  KSIY----GEKFPDENFALKHNKPGLLSMA----------NAGPNTNGSQFFITT--VVT 134

Query: 229 PQLDNENIVFGTVLEGLDVVAAISSTPTYKPSERIR 265
           P LD +++VFG V EG+DVV  + S  +   + R R
Sbjct: 135 PWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRAR 153

[Close]

BLAST of CmaCh05G012450 vs. TAIR 10
Match: AT5G35100.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein )

HSP 1 Score: 357.5 bits (916), Expect = 1.1e-98
Identity = 189/299 (63.21%), Postives = 221/299 (73.91%), Query Frame = 0


Query: 17  AATAVLLPPHHHHRRRPAGDIALPRRSLLLLSTSLSLSTAVDPPPSPASPSPNTTITDRV 76
           A++++L+PP             L RR+LLL +T       V PPP    PSP+ TITDRV
Sbjct: 2   ASSSILIPP------------ILTRRNLLLSTT----IATVTPPPPAKPPSPDITITDRV 61

Query: 77  FLDFSICPTNFLPNRESADDGGDSILCSDSALLGRLVLGLYGHLVPITVANFKSMCTGSC 136
           FLDFS+CPT F    + +     +  CSDS  LGR+VLGLYG  VPITV+ FK MCT S 
Sbjct: 62  FLDFSLCPTYF--RSDPSATLSSTTPCSDSTPLGRVVLGLYGRHVPITVSTFKRMCTSS- 121

Query: 137 GSSYKGTLVHKIFPGQFFLAGRQ--GRRDKGAV-RPPQQLPRNTETVKSDSFLLSHSRGG 196
            +SYK T VHKIFPGQ+FLAGRQ  GRRD   V    + LPRNT+ V S +FLL H+R G
Sbjct: 122 STSYKNTPVHKIFPGQYFLAGRQGGGRRDTAEVGYSLRDLPRNTDVVNSKAFLLPHARAG 181

Query: 197 IVSLCLSENDDDDELKLDPNYHNVEFLITTGPGPCPQLDNENIVFGTVLEGLDVVAAISS 256
           +VSLCLSENDDDD+++LDP+Y NVEFLITTGPGP PQLD  NIVFGTVLEGLDVV +ISS
Sbjct: 182 VVSLCLSENDDDDDIRLDPDYRNVEFLITTGPGPSPQLDGGNIVFGTVLEGLDVVTSISS 241

Query: 257 TPTYKPSERIRQFNDLAKFLGDERAQNARTIWNRPLQTVYISDCGELKVAKPSLSPTLP 313
            PTYKPSE I+QFND A+FLGDERAQNAR++WNRPL+TV+IS CGELKV  PSLSPTLP
Sbjct: 242 IPTYKPSENIKQFNDFAEFLGDERAQNARSLWNRPLKTVFISGCGELKVTNPSLSPTLP 281

[Close]

BLAST of CmaCh05G012450 vs. TAIR 10
Match: AT5G35100.2 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein )

HSP 1 Score: 305.4 bits (781), Expect = 5.1e-83
Identity = 169/298 (56.71%), Postives = 197/298 (66.11%), Query Frame = 0


Query: 17  AATAVLLPPHHHHRRRPAGDIALPRRSLLLLSTSLSLSTAVDPPPSPASPSPNTTITDRV 76
           A++++L+PP             L RR+LLL +T       V PPP    PSP+ TITDRV
Sbjct: 2   ASSSILIPP------------ILTRRNLLLSTT----IATVTPPPPAKPPSPDITITDRV 61

Query: 77  FLDFSICPTNFLPNRESADDGGDSILCSDSALLGRLVLGLYGHLVPITVANFKSMCTGSC 136
           FLDFS+CPT F    + +     +  CSDS  LGR+VLGLYG  VPITV+ FK MCT S 
Sbjct: 62  FLDFSLCPTYF--RSDPSATLSSTTPCSDSTPLGRVVLGLYGRHVPITVSTFKRMCTSS- 121

Query: 137 GSSYKGTLVHKIFPGQFFLAGRQ--GRRDKGAVRPPQQLPRNTETVKSDSFLLSHSRGGI 196
            +SYK T VHKIFPGQ+FLAGRQ  GRRD                               
Sbjct: 122 STSYKNTPVHKIFPGQYFLAGRQGGGRRD------------------------------- 181

Query: 197 VSLCLSENDDDDELKLDPNYHNVEFLITTGPGPCPQLDNENIVFGTVLEGLDVVAAISST 256
                +ENDDDD+++LDP+Y NVEFLITTGPGP PQLD  NIVFGTVLEGLDVV +ISS 
Sbjct: 182 ----TAENDDDDDIRLDPDYRNVEFLITTGPGPSPQLDGGNIVFGTVLEGLDVVTSISSI 241

Query: 257 PTYKPSERIRQFNDLAKFLGDERAQNARTIWNRPLQTVYISDCGELKVAKPSLSPTLP 313
           PTYKPSE I+QFND A+FLGDERAQNAR++WNRPL+TV+IS CGELKV  PSLSPTLP
Sbjct: 242 PTYKPSENIKQFNDFAEFLGDERAQNARSLWNRPLKTVFISGCGELKVTNPSLSPTLP 245

[Close]

BLAST of CmaCh05G012450 vs. TAIR 10
Match: AT5G13120.1 (cyclophilin 20-2 )

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-17
Identity = 69/237 (29.11%), Postives = 106/237 (44.73%), Query Frame = 0


Query: 68  PNTTITDRVFLDFSICPTNFLPNRESADDGGDSILCSDSALLGRLVLGLYGHLVPITVAN 127
           P + IT +V+ D S+               G+ +      L GR+V+GLYG  VP TV N
Sbjct: 84  PQSKITHKVYFDISV---------------GNPV----GKLAGRIVIGLYGDDVPQTVEN 143

Query: 128 FKSMCTGSCGSSYKGTLVHKIFPGQFFLAGRQGRRDKGAVRPPQQLPRNTETVKSDSFLL 187
           F+++CTG  G  YKG+  H++    F + G  G  +KG     + +     T K ++F L
Sbjct: 144 FRALCTGEKGFGYKGSTFHRVI-RDFMIQG--GDFEKGNGTGGKSV--YGRTFKDENFKL 203

Query: 188 SHSRGGIVSLCLSENDDDDELKLDPNYHNVEFLITTGPGPCPQLDNENIVFGTVLEGLDV 247
           SH   G++S+              PN +  +F I T       LD  ++VFG V+EG++V
Sbjct: 204 SHVGPGVLSMA----------NAGPNTNGSQFFICT--IKTSWLDGRHVVFGQVIEGMEV 258

Query: 248 VAAISSTPTYKPSERIRQFNDLAKFLGDERAQNARTIWNRPLQTVYISDCGELKVAK 305
           V  I    T +               GD           RP + V I+DCG+L +++
Sbjct: 264 VKLIEEQETDR---------------GD-----------RPRKKVVIADCGQLPMSE 258

[Close]

BLAST of CmaCh05G012450 vs. TAIR 10
Match: AT5G13120.2 (cyclophilin 20-2 )

HSP 1 Score: 87.0 bits (214), Expect = 2.8e-17
Identity = 69/237 (29.11%), Postives = 106/237 (44.73%), Query Frame = 0


Query: 68  PNTTITDRVFLDFSICPTNFLPNRESADDGGDSILCSDSALLGRLVLGLYGHLVPITVAN 127
           P + IT +V+ D S+               G+ +      L GR+V+GLYG  VP TV N
Sbjct: 80  PQSKITHKVYFDISV---------------GNPV----GKLAGRIVIGLYGDDVPQTVEN 139

Query: 128 FKSMCTGSCGSSYKGTLVHKIFPGQFFLAGRQGRRDKGAVRPPQQLPRNTETVKSDSFLL 187
           F+++CTG  G  YKG+  H++    F + G  G  +KG     + +     T K ++F L
Sbjct: 140 FRALCTGEKGFGYKGSTFHRVI-RDFMIQG--GDFEKGNGTGGKSV--YGRTFKDENFKL 199

Query: 188 SHSRGGIVSLCLSENDDDDELKLDPNYHNVEFLITTGPGPCPQLDNENIVFGTVLEGLDV 247
           SH   G++S+              PN +  +F I T       LD  ++VFG V+EG++V
Sbjct: 200 SHVGPGVLSMA----------NAGPNTNGSQFFICT--IKTSWLDGRHVVFGQVIEGMEV 254

Query: 248 VAAISSTPTYKPSERIRQFNDLAKFLGDERAQNARTIWNRPLQTVYISDCGELKVAK 305
           V  I    T +               GD           RP + V I+DCG+L +++
Sbjct: 260 VKLIEEQETDR---------------GD-----------RPRKKVVIADCGQLPMSE 254

[Close]

BLAST of CmaCh05G012450 vs. TAIR 10
Match: AT4G34960.1 (Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein )

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-13
Identity = 71/245 (28.98%), Postives = 110/245 (44.90%), Query Frame = 0


Query: 31  RRPAGDIALPRRSLLLLSTSLSLSTAV--DPPPSPASPSPNTTITDRVFLDFSICPTNFL 90
           RR    +  PR  LLL++ ++ L  A+             +  IT+RVFLD  I      
Sbjct: 2   RREISFLLQPRCLLLLVALTIFLVFALFNTGKDEEKQVIEDHEITNRVFLDVDI------ 61

Query: 91  PNRESADDGGDSILCSDSALLGRLVLGLYGHLVPITVANFKSMCTGSCGSS-------YK 150
                           D   LGR+V+GLYG +VP TV NF+++CTG  G +       YK
Sbjct: 62  ----------------DGQRLGRIVIGLYGTVVPKTVENFRALCTGEKGKTSSGKPLHYK 121

Query: 151 GTLVHKIFPGQFFLAGRQGRRDKGAVRPPQQLPRNTETVKSDSFLLSHSRGGIVSLCLSE 210
           GT  H+I  G F + G  G    G  +    +     T   ++F + HS  G+V++    
Sbjct: 122 GTPFHRIISG-FVIQG--GDIIHGDGKSSDSIYGG--TFPDENFKIQHSHAGMVAMA--- 181

Query: 211 NDDDDELKLDPNYHNVEFLITTGPGPCPQLDNENIVFGTVLEGLDVVAAI---SSTPTYK 264
                     P+ +  +F ITT       L+ E++V G V++G+D V AI   + T + K
Sbjct: 182 -------NTGPDSNGSQFFITT--VKASWLEGEHVVLGKVIQGMDNVFAIEGGAGTYSGK 207

The following BLAST results are available for this feature:

BLAST of CmaCh05G012450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65220	1.6e-97	63.21	Peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9ASS6	4.0e-16	29.11	Photosynthetic NDH subunit of lumenal location 5, chloroplastic OS=Arabidopsis t...	[more]
Q41651	5.2e-16	32.09	Peptidyl-prolyl cis-trans isomerase, chloroplastic OS=Vicia faba OX=3906 PE=1 SV...	[more]
Q01490	5.2e-16	32.82	Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) OX=50059 ...	[more]
P18253	2.6e-15	33.33	Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe (strain 972 / A...	[more]

BLAST of CmaCh05G012450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35100.1	1.1e-98	63.21	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	[more]
AT5G35100.2	5.1e-83	56.71	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	[more]
AT5G13120.1	2.8e-17	29.11	cyclophilin 20-2	[more]
AT5G13120.2	2.8e-17	29.11	cyclophilin 20-2	[more]
AT4G34960.1	1.1e-13	28.98	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PRINTS	PR00153	CSAPPISMRASE	coord: 145..157 score: 24.27 coord: 233..248 score: 46.66 coord: 116..131 score: 40.36
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PFAM	PF00160	Pro_isomerase	coord: 109..261 e-value: 7.9E-19 score: 68.4
IPR002130	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	PROSITE	PS50072	CSA_PPIASE_2	coord: 109..299 score: 20.27845
IPR029000	Cyclophilin-like domain superfamily	GENE3D	2.40.100.10		coord: 64..272 e-value: 1.5E-28 score: 101.9
IPR029000	Cyclophilin-like domain superfamily	SUPERFAMILY	50891	Cyclophilin-like	coord: 108..300
IPR044178	Peptidyl-prolyl cis-trans isomerase CYP28-like	PANTHER	PTHR47875	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP28, CHLOROPLASTIC	coord: 7..312
None	No IPR available	CDD	cd00317	cyclophilin	coord: 110..264 e-value: 5.46587E-27 score: 101.186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G012450.1	CmaCh05G012450.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity