CmaCh05G012310 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G012310
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like
Location	Cma_Chr05: 9460738 .. 9461280 (+)
RNA-Seq Expression	CmaCh05G012310
Synteny	CmaCh05G012310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGTTCTCAAAATCATCATCCAATCCCATACCCATACCACCCACCACCACCACAACCACCATCACCGCCGCCGCGTGTTCGCCGTCATCATCCTCTACCACCACACCAAGCCGGTATGAGAATCAAAAACGGCGAGATTGGAACACGTTCTGTCAGTACCTTCGCAACCACCGACCGCCGTTGGCTCTACAAATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGACCATTTTGGGAAGACCAAAGTTCACAACCAAACCTGCCCGTTCTTCGGCCTGCCCAACCCGCCAGCTCCCTGTCCCTGCCCGCTCCGACAGGCTTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGTGCAGCTTTTGAAGAGAACGGCGGCCGGCCGGAAGCCAACCCATTTGGAGCTAGAGCTGTTCGTCTCTATTTAAGGGAAGTTCGTGATTTTCAAACGAAAGCAAGAGGTGTTAGCTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAGCAAAAGCAAGAGGGTGCAACTTGA

mRNA sequence

ATGGATTTGTTCTCAAAATCATCATCCAATCCCATACCCATACCACCCACCACCACCACAACCACCATCACCGCCGCCGCGTGTTCGCCGTCATCATCCTCTACCACCACACCAAGCCGGTATGAGAATCAAAAACGGCGAGATTGGAACACGTTCTGTCAGTACCTTCGCAACCACCGACCGCCGTTGGCTCTACAAATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGACCATTTTGGGAAGACCAAAGTTCACAACCAAACCTGCCCGTTCTTCGGCCTGCCCAACCCGCCAGCTCCCTGTCCCTGCCCGCTCCGACAGGCTTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGTGCAGCTTTTGAAGAGAACGGCGGCCGGCCGGAAGCCAACCCATTTGGAGCTAGAGCTGTTCGTCTCTATTTAAGGGAAGTTCGTGATTTTCAAACGAAAGCAAGAGGTGTTAGCTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAGCAAAAGCAAGAGGGTGCAACTTGA

Coding sequence (CDS)

ATGGATTTGTTCTCAAAATCATCATCCAATCCCATACCCATACCACCCACCACCACCACAACCACCATCACCGCCGCCGCGTGTTCGCCGTCATCATCCTCTACCACCACACCAAGCCGGTATGAGAATCAAAAACGGCGAGATTGGAACACGTTCTGTCAGTACCTTCGCAACCACCGACCGCCGTTGGCTCTACAAATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTGGACCATTTTGGGAAGACCAAAGTTCACAACCAAACCTGCCCGTTCTTCGGCCTGCCCAACCCGCCAGCTCCCTGTCCCTGCCCGCTCCGACAGGCTTGGGGCAGCCTCGACGCCCTCATCGGCCGCCTCCGTGCAGCTTTTGAAGAGAACGGCGGCCGGCCGGAAGCCAACCCATTTGGAGCTAGAGCTGTTCGTCTCTATTTAAGGGAAGTTCGTGATTTTCAAACGAAAGCAAGAGGTGTTAGCTATGAGAAGAAGAGAAAAAGGCCAAAGCAAAAGCAAAAGCAAGAGGGTGCAACTTGA

Protein sequence

MDLFSKSSSNPIPIPPTTTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQKQEGAT

Homology

[Close]

BLAST of CmaCh05G012310 vs. ExPASy Swiss-Prot
Match: Q6NNI3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.4e-68
Identity = 125/151 (82.78%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 29  SPSSSSTTTP---SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGK 88
           +P+SS+  TP   SRYENQKRRDWNTFCQYLRNHRPPL+L  CSGAHVLEFLRYLD FGK
Sbjct: 11  NPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 70

Query: 89  TKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVR 148
           TKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVR
Sbjct: 71  TKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130

Query: 149 LYLREVRDFQTKARGVSYEKKRKRPKQKQKQ 177
           L+LREVRDFQ KARGVSYEKKRKR  +++ Q
Sbjct: 131 LFLREVRDFQAKARGVSYEKKRKRVNRQKPQ 161

[Close]

BLAST of CmaCh05G012310 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 4.1e-66
Identity = 125/154 (81.17%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 18  TTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFL 77
           TTTTT ++++ S   S T   SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFL
Sbjct: 26  TTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 85

Query: 78  RYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEAN 137
           RYLD FGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRAAFEENGG PE N
Sbjct: 86  RYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETN 145

Query: 138 PFGARAVRLYLREVRDFQTKARGVSYE-KKRKRP 171
           PFGARAVRLYLREVRD Q KARG+SYE KKRKRP
Sbjct: 146 PFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of CmaCh05G012310 vs. ExPASy Swiss-Prot
Match: Q9M836 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.1e-66
Identity = 127/175 (72.57%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 1   MDLFSKSSSNPIPIPPTTTTTTITAAACSPSS-SSTTTPSRYENQKRRDWNTFCQYLRNH 60
           MDL S++ +N  P    +T T        PSS SS  + SRYENQKRRDWNTFCQYLRNH
Sbjct: 1   MDLISQNHNNRNPNTSLSTQT--------PSSFSSPPSSSRYENQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
            PPL+L  CSGAHVL+FLRYLD FGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  HPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQ 175
           IGRLRAA+EENGG PE +PFG+R+VR++LREVRDFQ K+RGVSYEKKRKR   KQ
Sbjct: 121 IGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQ 167

[Close]

BLAST of CmaCh05G012310 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.5e-65
Identity = 121/143 (84.62%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 29  SPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKV 88
           S SSS +   SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLD FGKTKV
Sbjct: 43  SSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 102

Query: 89  HNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYL 148
           H   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG+PE NPFGARAVRLYL
Sbjct: 103 HTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 162

Query: 149 REVRDFQTKARGVSYE-KKRKRP 171
           REVRD Q+KARGVSYE KKRKRP
Sbjct: 163 REVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of CmaCh05G012310 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.1e-64
Identity = 119/151 (78.81%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 29  SPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKV 88
           S  + +  +PSRYE QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLD FGKTKV
Sbjct: 30  SMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKV 89

Query: 89  HNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYL 148
           H   CPFFG P+PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGGRPE+NPF ARAVRLYL
Sbjct: 90  HTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYL 149

Query: 149 REVRDFQTKARGVSYE-KKRKRPKQKQKQEG 179
           REVR+ Q +ARGVSYE KKRK+P+Q+Q Q G
Sbjct: 150 REVREHQARARGVSYEKKKRKKPQQQQLQGG 180

[Close]

BLAST of CmaCh05G012310 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 259.2 bits (661), Expect = 2.4e-69
Identity = 125/151 (82.78%), Postives = 136/151 (90.07%), Query Frame = 0


Query: 29  SPSSSSTTTP---SRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGK 88
           +P+SS+  TP   SRYENQKRRDWNTFCQYLRNHRPPL+L  CSGAHVLEFLRYLD FGK
Sbjct: 11  NPNSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGK 70

Query: 89  TKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVR 148
           TKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVR
Sbjct: 71  TKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVR 130

Query: 149 LYLREVRDFQTKARGVSYEKKRKRPKQKQKQ 177
           L+LREVRDFQ KARGVSYEKKRKR  +++ Q
Sbjct: 131 LFLREVRDFQAKARGVSYEKKRKRVNRQKPQ 161

[Close]

BLAST of CmaCh05G012310 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 252.3 bits (643), Expect = 2.9e-67
Identity = 125/154 (81.17%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 18  TTTTTITAAACSPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFL 77
           TTTTT ++++ S   S T   SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFL
Sbjct: 26  TTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFL 85

Query: 78  RYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEAN 137
           RYLD FGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGRLRAAFEENGG PE N
Sbjct: 86  RYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETN 145

Query: 138 PFGARAVRLYLREVRDFQTKARGVSYE-KKRKRP 171
           PFGARAVRLYLREVRD Q KARG+SYE KKRKRP
Sbjct: 146 PFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of CmaCh05G012310 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 251.5 bits (641), Expect = 5.0e-67
Identity = 127/175 (72.57%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 1   MDLFSKSSSNPIPIPPTTTTTTITAAACSPSS-SSTTTPSRYENQKRRDWNTFCQYLRNH 60
           MDL S++ +N  P    +T T        PSS SS  + SRYENQKRRDWNTFCQYLRNH
Sbjct: 1   MDLISQNHNNRNPNTSLSTQT--------PSSFSSPPSSSRYENQKRRDWNTFCQYLRNH 60

Query: 61  RPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDAL 120
            PPL+L  CSGAHVL+FLRYLD FGKTKVH+Q C FFGLPNPPAPCPCPLRQAWGSLDAL
Sbjct: 61  HPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDAL 120

Query: 121 IGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQKQ 175
           IGRLRAA+EENGG PE +PFG+R+VR++LREVRDFQ K+RGVSYEKKRKR   KQ
Sbjct: 121 IGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNNKQ 167

[Close]

BLAST of CmaCh05G012310 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 249.2 bits (635), Expect = 2.5e-66
Identity = 121/143 (84.62%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 29  SPSSSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKV 88
           S SSS +   SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLD FGKTKV
Sbjct: 43  SSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 102

Query: 89  HNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYL 148
           H   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG+PE NPFGARAVRLYL
Sbjct: 103 HTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 162

Query: 149 REVRDFQTKARGVSYE-KKRKRP 171
           REVRD Q+KARGVSYE KKRKRP
Sbjct: 163 REVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of CmaCh05G012310 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 229.9 bits (585), Expect = 1.6e-60
Identity = 107/140 (76.43%), Postives = 121/140 (86.43%), Query Frame = 0


Query: 32  SSSTTTPSRYENQKRRDWNTFCQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQ 91
           SS   TPSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLD FGKTKVH  
Sbjct: 23  SSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVA 82

Query: 92  TCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYLREV 151
            CP+FG   PP+PC CPL+QAWGSLDALIGRLRAA+EENGGRP++NPF ARAVR+YLREV
Sbjct: 83  ACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREV 142

Query: 152 RDFQTKARGVSYE-KKRKRP 171
           R+ Q KARG+ YE KKRKRP
Sbjct: 143 RESQAKARGIPYEKKKRKRP 162

The following BLAST results are available for this feature:

BLAST of CmaCh05G012310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNI3	3.4e-68	82.78	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	4.1e-66	81.17	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9M836	7.1e-66	72.57	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
O82268	3.5e-65	84.62	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XVI8	5.1e-64	78.81	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]

BLAST of CmaCh05G012310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28490.1	2.4e-69	82.78	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.9e-67	81.17	Protein of unknown function (DUF640)	[more]
AT3G04510.1	5.0e-67	72.57	Protein of unknown function (DUF640)	[more]
AT2G31160.1	2.5e-66	84.62	Protein of unknown function (DUF640)	[more]
AT1G07090.1	1.6e-60	76.43	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 33..153 e-value: 1.3E-65 score: 219.3
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 40..167 score: 81.734764
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..180
None	No IPR available	PANTHER	PTHR31165:SF15	PROTEIN G1-LIKE5	coord: 17..175
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..28 score: 5.0
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 17..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G012310.1	CmaCh05G012310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus