CmaCh05G011970 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G011970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	EF-hand domain-containing protein
Location	Cma_Chr05: 9255069 .. 9258501 (+)
RNA-Seq Expression	CmaCh05G011970
Synteny	CmaCh05G011970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCAATTTCGCATTTGAAGTAAACTCTCCATTTCCCTCTCTCGAGCTTTTCTTCCTCTCTGCGAAAATGTCAGAAACCACAATAACGATCCTGGACGGCACGCAGCTAAGATCCATCGACCTCTCTCTGCCCTTCTCCGATGGTAGTGTCTCCGGAGCTCAGGTCCTCGACCTTGCCGATTCCTCAGTCTCCTCGTCTCTGTTCGAGATCGCCTTGTCGGAGACTCTCAGATCATCTGCTCTTAATCGCATTGGCTTCCACGACATTGTTGCTTTCCGACGATCGGAGCTCACTCGTGAGCGAGCCTCTGAGATTCTGAAGGCCTATGTAGCTGCGATCGCTGATGGTTTAAGAGGTATCTTGTTTCCTCGTGTTTGTATGGTGTCTTAATGCGTAATGTTCGTGAATTTCGTTATCGGTGCTCTTGGCAGCTCATCAGGAAGTATGATTGAGTGTTTTTTTTCCTCATGAATTTGATATTTTAGATCTTGCGAATAGTGAATTTGACTGTGAAGGATGAACAGAAAAGGGAGGAGAAATTGTTTCAGCGTGATGAAATTGAACTGATGGCTTAAATGTTGGTTGTTTGACTGGATTCCAAGCATGTGTAGGGCATTGATTTCCAATGAGAACTAGATACTTCGCTCAAAAGTTGTAATCTGATATTTTAGATATATATATACCTTGGTACAGATATCATGTATCTGTCTGGTTCAACCATTTTAGTCTAGTAGAATGATAGAGGATTACCTAGATCACTATGAATTATGATTGATTTGTTGGATATTTCTCTCTGTTTTATCTCTGTAGCAAGAAAACATTACTAATAAATTTCTGTTTTCCCAGATGATCCTGTTGTAGTGTCAATTTTGGATGGGAACAATCTGCGTGTTTTCTTAGATGATGAAGATGATTTTGCAATGCTAGCTGAGTCCCTTTTCACTGATTTAGATACAGAAGATAAAGGAAAGATCAAGAAGAGTGAGATTAAAAATGCTCTTATCCACATGGGGGTTGAAACGGGTGTACCACCTCTCTCAGGTTTATTCATATTTTACTTTCCTCCTTTTCTCCTCTTTTCTTGTTTCATTCTTGGTAATCTACTTTCCATTTTTACTTTGGTCTATGTCTTTAGACTGAGAATTGTCTTCTACACGCTTCTACAACGAATTTATTTGCAAGTTGGTCTTCCTGCCTTTGTTTGTGGAATTTTTCAAAACTTTCTGCTCAATTATATCCACTGTTTCATGTGTTCTACATATCATGTTTAAAACTCCCGTACATAAGCTTCTACGAGGATATTTTGAATCTCCTCTTAGTGGTACAGTAGCTAGCTACATAGAGCTATTATTCTGGTACAAGTCGCTAACTATTTGCAGAAAAAACATACTGCATCACATGTTTATCACGACTATGAATGCTTTCCACGTTAAATGTATGGAAGAATTTCTAGAATGTTGTAATACATTAAGGAGATGCAGATCAGACTCATCAATGAGAAATTTTTGTATAAACATTCTCTTTGGATTTTCCTTACTTGGAAATGGTTTTTAAATAACTTTTCTCTACTATGACGTAAGGAACTTTAGTTTTGAGCATTTGTTCTATTTTTTAACTGATCAGTAAAAGGACCCTACTTCACATATGATGTTAAAACCTGTGTGCATTTGCAACGAACTTCTCTTTGTAACATACCAGTGATGAAACAGAATATCCTTTGCTGAGCGACATCTTGCAAAAACACGAAGTGGAGAGCAGCAATGAATTGGGCCAAGCTCAATTTGCAGAAGTGCTTCAGCCTGTCCTTCAAGAGTTAGCAGATACTCTTGCAAAAAAGCCTTATGTTTTCATTCAAAGTATCAAGGTCGCTAATGGAGCTCGGATAAAAAAGGTAAATCGGTACCTTTCCTTTTCTTCCTTGGACATACCCCTCAATGATATCTTCCCCTTGACATTGGGAATTGGAAACTGTTGTAAACCCTTTTTTATGAGAAACTTTGAAAGTGTAGTAAACCCTTAATACCATCATTAGCATATTTTCTTAGATAATTTTACTGGCCTGGTTTATCTGCATCCGACATCTTACGTACTATAAGGATTACACCCATCAAATTGTGGATTCATTAATTTTGGAAATTTTAACATTATATACTATCAGTAACAGGCACTGACAAAAAATGGGTAAGCCCTGACATGTAACCCTTAAGTTCTGCACTGAGTTGACTAGCTTCTGGATCTTAGAACTATCCACTGCACTTAATACCATGTGAAATTGTTGTTATTATTTTATACTCGAGGAAAATATTCTTTCTGTTGGTCATATGATGATAGATACCCCACTGATTGCAGTGAGCTAGTTCACTGGAGTCAAAGTTACCAATTCTAGGGAGTCCATATCAATTTATGTCTGATCCTTCACATATAGTTTCCTTCAACCGTATTCTCTTTATGAACTAGAGCAAATCCAAATTGATCTTGTAAGACAAATGCTATTGAACAAATCTGTTTTTCAAATGATTTATATCGTCAAGTATACCCATTCCAAATTAAGTGACCTGCACTTCAGATATTGTAAACTGAATGTATATATGCACAGTGAGATCTGGTAGTTTTCTTCTTTGTGATGAAGTTTTATTTTCATCTAATCTACTCTAGTGAATATTGACTTGCATGAATTCTTACTACTATTTGGGAACTATGAATATTTTTGAAAATATTGTAATTCCTGATGTGAGTTGCAGCTTTTGGCTGACGAGAAGCAATTCAGCAATGTCATAGAAAAGCTCTGGCAGTGGCAGGGAACCCATAAAGAAGAGGATGAGGTAACAACTTCGCAAAAAATCAGGAATTACTTCGAAAAAGAATGGAGGGAACTGGGCTTACCACCTACAGAAGCCAATGATGCCGTGGTTCTTCTCTATGATGCAATATTTGCTGATATAGCGAAGGAGAAGTGTGGTTCAATATCTGAAAAAAATCAAGTAGAAAAACTTGCGAAGGAGATTTTGGAGATATTTGTGGAGCAGCTTGAAGCCAGTCCTGTGTATTATGATTGTGACCCCAAATGAGCAAGGTGACCGTGTTACATCTGAAGCTCGCGTCATCACTTACGGAGTCGGTTGTTTCTTTGATCATCATTCTATTATGATCAGGTACGAGCATTTAAGAGTAAAGTAATTATGATATCAAACTCGCGTTGGGCTAGCATGTTATCCTGAAACATAGTCATGTTCATTATACACCATACTGAATTTGGAGCCCCTCGAAGTGGCCAATAGTGTTATACCATAACATACAGATTCAGAATAAAAATGTATCATTCAGATGGGATTTGGTTATACATTTTGTGAGGAACAATATATAATCCTACCAGAAAAAATCATGTACTTCTAGGTGAAGCTTTTGTCTGGTTAGATTAAAAGTAAAATGCAT

mRNA sequence

AGTCAATTTCGCATTTGAAGTAAACTCTCCATTTCCCTCTCTCGAGCTTTTCTTCCTCTCTGCGAAAATGTCAGAAACCACAATAACGATCCTGGACGGCACGCAGCTAAGATCCATCGACCTCTCTCTGCCCTTCTCCGATGGTAGTGTCTCCGGAGCTCAGGTCCTCGACCTTGCCGATTCCTCAGTCTCCTCGTCTCTGTTCGAGATCGCCTTGTCGGAGACTCTCAGATCATCTGCTCTTAATCGCATTGGCTTCCACGACATTGTTGCTTTCCGACGATCGGAGCTCACTCGTGAGCGAGCCTCTGAGATTCTGAAGGCCTATGTAGCTGCGATCGCTGATGGTTTAAGAGATGATCCTGTTGTAGTGTCAATTTTGGATGGGAACAATCTGCGTGTTTTCTTAGATGATGAAGATGATTTTGCAATGCTAGCTGAGTCCCTTTTCACTGATTTAGATACAGAAGATAAAGGAAAGATCAAGAAGAGTGAGATTAAAAATGCTCTTATCCACATGGGGGTTGAAACGGGTGTACCACCTCTCTCAGAATATCCTTTGCTGAGCGACATCTTGCAAAAACACGAAGTGGAGAGCAGCAATGAATTGGGCCAAGCTCAATTTGCAGAAGTGCTTCAGCCTGTCCTTCAAGAGTTAGCAGATACTCTTGCAAAAAAGCCTTATGTTTTCATTCAAAGTATCAAGGTCGCTAATGGAGCTCGGATAAAAAAGCTTTTGGCTGACGAGAAGCAATTCAGCAATGTCATAGAAAAGCTCTGGCAGTGGCAGGGAACCCATAAAGAAGAGGATGAGGTAACAACTTCGCAAAAAATCAGGAATTACTTCGAAAAAGAATGGAGGGAACTGGGCTTACCACCTACAGAAGCCAATGATGCCGTGGTTCTTCTCTATGATGCAATATTTGCTGATATAGCGAAGGAGAAGTGTGGTTCAATATCTGAAAAAAATCAAGTAGAAAAACTTGCGAAGGAGATTTTGGAGATATTTGTGGAGCAGCTTGAAGCCAGTCCTGTGTATTATGATTGTGACCCCAAATGAGCAAGGTGACCGTGTTACATCTGAAGCTCGCGTCATCACTTACGGAGTCGGTTGTTTCTTTGATCATCATTCTATTATGATCAGGTACGAGCATTTAAGAGTAAAGTAATTATGATATCAAACTCGCGTTGGGCTAGCATGTTATCCTGAAACATAGTCATGTTCATTATACACCATACTGAATTTGGAGCCCCTCGAAGTGGCCAATAGTGTTATACCATAACATACAGATTCAGAATAAAAATGTATCATTCAGATGGGATTTGGTTATACATTTTGTGAGGAACAATATATAATCCTACCAGAAAAAATCATGTACTTCTAGGTGAAGCTTTTGTCTGGTTAGATTAAAAGTAAAATGCAT

Coding sequence (CDS)

ATGTCAGAAACCACAATAACGATCCTGGACGGCACGCAGCTAAGATCCATCGACCTCTCTCTGCCCTTCTCCGATGGTAGTGTCTCCGGAGCTCAGGTCCTCGACCTTGCCGATTCCTCAGTCTCCTCGTCTCTGTTCGAGATCGCCTTGTCGGAGACTCTCAGATCATCTGCTCTTAATCGCATTGGCTTCCACGACATTGTTGCTTTCCGACGATCGGAGCTCACTCGTGAGCGAGCCTCTGAGATTCTGAAGGCCTATGTAGCTGCGATCGCTGATGGTTTAAGAGATGATCCTGTTGTAGTGTCAATTTTGGATGGGAACAATCTGCGTGTTTTCTTAGATGATGAAGATGATTTTGCAATGCTAGCTGAGTCCCTTTTCACTGATTTAGATACAGAAGATAAAGGAAAGATCAAGAAGAGTGAGATTAAAAATGCTCTTATCCACATGGGGGTTGAAACGGGTGTACCACCTCTCTCAGAATATCCTTTGCTGAGCGACATCTTGCAAAAACACGAAGTGGAGAGCAGCAATGAATTGGGCCAAGCTCAATTTGCAGAAGTGCTTCAGCCTGTCCTTCAAGAGTTAGCAGATACTCTTGCAAAAAAGCCTTATGTTTTCATTCAAAGTATCAAGGTCGCTAATGGAGCTCGGATAAAAAAGCTTTTGGCTGACGAGAAGCAATTCAGCAATGTCATAGAAAAGCTCTGGCAGTGGCAGGGAACCCATAAAGAAGAGGATGAGGTAACAACTTCGCAAAAAATCAGGAATTACTTCGAAAAAGAATGGAGGGAACTGGGCTTACCACCTACAGAAGCCAATGATGCCGTGGTTCTTCTCTATGATGCAATATTTGCTGATATAGCGAAGGAGAAGTGTGGTTCAATATCTGAAAAAAATCAAGTAGAAAAACTTGCGAAGGAGATTTTGGAGATATTTGTGGAGCAGCTTGAAGCCAGTCCTGTGTATTATGATTGTGACCCCAAATGA

Protein sequence

MSETTITILDGTQLRSIDLSLPFSDGSVSGAQVLDLADSSVSSSLFEIALSETLRSSALNRIGFHDIVAFRRSELTRERASEILKAYVAAIADGLRDDPVVVSILDGNNLRVFLDDEDDFAMLAESLFTDLDTEDKGKIKKSEIKNALIHMGVETGVPPLSEYPLLSDILQKHEVESSNELGQAQFAEVLQPVLQELADTLAKKPYVFIQSIKVANGARIKKLLADEKQFSNVIEKLWQWQGTHKEEDEVTTSQKIRNYFEKEWRELGLPPTEANDAVVLLYDAIFADIAKEKCGSISEKNQVEKLAKEILEIFVEQLEASPVYYDCDPK

Homology

[Close]

BLAST of CmaCh05G011970 vs. TAIR 10
Match: AT5G28830.1 (calcium-binding EF hand family protein )

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-75
Identity = 159/327 (48.62%), Postives = 225/327 (68.81%), Query Frame = 0


Query: 1   MSETT-ITILDGTQLRSIDLSLPFSDGSVSGAQVLDLADSSVSSSLFEIALSETLRSSAL 60
           MS T  +TI DG  LRSIDL+LP     V+GAQ+L++++S VS SL  ++L   L+ +A+
Sbjct: 1   MSNTAGLTIFDGDLLRSIDLNLPEHQHRVTGAQLLEISESKVSQSLSGLSLPPHLKETAI 60

Query: 61  NRIGFHDIVAFRRSELTRERASEILKAYVAAIADGLRDDPVVVSILDGNNLRVFLDDEDD 120
           +++   D V FRR+   +++ASE L  + + +AD L+D P+VVSILDG  L++FL+DEDD
Sbjct: 61  SQVSDGDHVTFRRTMFNKQQASEKLGVFFSTVADALKDTPIVVSILDGTMLKMFLEDEDD 120

Query: 121 FAMLAESLFTDLDTEDKGKIKKSEIKNALIHMGVETGVPPLSEYPLLSDILQKHEVESSN 180
           FAMLAE+LFTDLD EDKGK+ KSEI+ AL+HMGVE GVPPLSE+P+L DI++KH+ +S  
Sbjct: 121 FAMLAENLFTDLDEEDKGKLCKSEIRKALVHMGVEMGVPPLSEFPILDDIIKKHDADSDE 180

Query: 181 ELGQAQFAEVLQPVLQELADTLAKKPYVFIQSIKVANGARIKKLLADEKQFSNVIEKLWQ 240
           ELGQAQFAE+LQ VLQE+AD L +KP   + ++++  G+RI+K+LADEK    ++EK   
Sbjct: 181 ELGQAQFAELLQQVLQEIADVLHEKPITIVLNVEIFTGSRIRKILADEKTLKCLVEK--- 240

Query: 241 WQGTHKEEDEVTTSQK-IRNYFEKEWRELGLPP-TEANDAVVLLYDAIFADIAKEKCGSI 300
              T  EE     SQ  +R    K  +ELGLPP +  N+ V LLY+ I + +  ++  + 
Sbjct: 241 ---TILEESNGKESQGWLRTLIIKNGKELGLPPLSSENEQVALLYETIISQLNNKE--NA 300

Query: 301 SEKNQVEKLAKEILEIFVEQLEASPVY 325
           S K +     K+IL+ F E LE +PV+
Sbjct: 301 STKEEFMDALKDILKKFEELLETTPVF 319

[Close]

BLAST of CmaCh05G011970 vs. TAIR 10
Match: AT4G38810.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-06
Identity = 29/111 (26.13%), Postives = 58/111 (52.25%), Query Frame = 0


Query: 104 ILDGNNLRVFLDDEDDFAMLAESLFTDLDTEDKGKIKKSEIKNALIHMGVETGVPPLSEY 163
           +LDG+++   +++E  F    E  F  LD ++ GK+  +E++ A+  +G   G+P     
Sbjct: 14  VLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVADIGAALGLPAQGTS 73

Query: 164 P----LLSDILQKHEVESSNELGQAQFAEVLQPVLQELADTLAKKPYVFIQ 211
           P    + S++L +    S  ++ + +F EVL  +L  +A  L + P V ++
Sbjct: 74  PDSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILR 124

[Close]

BLAST of CmaCh05G011970 vs. TAIR 10
Match: AT2G44310.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.4e-06
Identity = 29/115 (25.22%), Postives = 52/115 (45.22%), Query Frame = 0


Query: 102 VSILDGNNLRVFLDDEDDFAMLAESLFTDLDTEDKGKIKKSEIKNAL-------IHMGVE 161
           V ++DG+ +R F+DDE+ F    +  F  LD    G + +SE++ A         H GV+
Sbjct: 3   VVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFGVD 62

Query: 162 TGVPPLSEYPLLSDILQKHEVESSNELGQAQFAEVLQPVLQELADTLAKKPYVFI 210
              P      L   I +K + + S  +   +F   ++ ++  +AD L   P   +
Sbjct: 63  VVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMV 117

The following BLAST results are available for this feature:

BLAST of CmaCh05G011970 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G011970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28830.1	1.1e-75	48.62	calcium-binding EF hand family protein	[more]
AT4G38810.2	1.1e-06	26.13	Calcium-binding EF-hand family protein	[more]
AT2G44310.1	2.4e-06	25.22	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34574	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED	coord: 1..328
None	No IPR available	PANTHER	PTHR34574:SF3	CALCIUM-BINDING EF HAND FAMILY PROTEIN	coord: 1..328

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G011970.1	CmaCh05G011970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding