CmaCh05G011930 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G011930
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribose-5-phosphate isomerase
Location	Cma_Chr05: 9240127 .. 9240981 (-)
RNA-Seq Expression	CmaCh05G011930
Synteny	CmaCh05G011930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCTCTCCTTTATCTCTCCTCCTTCTCTCTCCTCCTCCCGCCATGTTTCCTCCATAGCCAAACTTCTCCTCCGCTCCCCAAAATCCATAAATCTCTCCGCCCGTTGCCGACCTCTCTCCGTCCAAGCCCGCTCCGTCTCCACTCTCACTCAAGACGACCTTAAAAAGCTCGCCGCCGACAAAGCCGTCGAGTATGTCAAGAGCGGCATGGTCCTCGGCCTCGGCACTGGCTCCACCGCCGCCTTCGTCGTCGCCAAGATTGGCGAACTTCTCAAGAGTAATCAATTGAGAGACATTGTTGGAATCCCTACCTCGAAGCGGACGGAGGAGCAAGCTAGGTCATTAGGAATTCCTCTTTCTGTCTTGGACGACCATCCGCATCTCGATTTGGCCATCGATGGCGCTGATGAAGTCGATCCAGATCTGAATCTCGTCAAAGGCCGCGGTGGCGCTCTCTTGCGAGAGAAAATGGTGGAGGCCGCTTCCGATAAGTTCGTCGTCGTCGTCGATGAAACAAAATTAGTTGACGGCCTCGGTGGAAGCGGCCTCGCGATGCCGGTTGAAGTCGTTCAGTTCTGCTGGAAACACAATTTGGTGAGGCTTCAAGATCTGTTCAAGGACGAAGGTTGCGAGGCTAAGCTCCGATTGGAAGCCGACGGGAAGCCCTACGTCACCGATAACTCGAATTACATAGTTGATTTGTATTTCAAGACTCCGATCAAGGACGGATTGGCCGCCGGTAAAGAGATCTCGGCGTTTGAAGGAGTGGTGGAGCACGGATTGTTCTTGGACATGGCGACCGCCGTAATCATCGCCGGAAAAGATGGAATCGACATCAAAACGAAATGA

mRNA sequence

ATGGCTTCCCTCTCCTTTATCTCTCCTCCTTCTCTCTCCTCCTCCCGCCATGTTTCCTCCATAGCCAAACTTCTCCTCCGCTCCCCAAAATCCATAAATCTCTCCGCCCGTTGCCGACCTCTCTCCGTCCAAGCCCGCTCCGTCTCCACTCTCACTCAAGACGACCTTAAAAAGCTCGCCGCCGACAAAGCCGTCGAGTATGTCAAGAGCGGCATGGTCCTCGGCCTCGGCACTGGCTCCACCGCCGCCTTCGTCGTCGCCAAGATTGGCGAACTTCTCAAGAGTAATCAATTGAGAGACATTGTTGGAATCCCTACCTCGAAGCGGACGGAGGAGCAAGCTAGGTCATTAGGAATTCCTCTTTCTGTCTTGGACGACCATCCGCATCTCGATTTGGCCATCGATGGCGCTGATGAAGTCGATCCAGATCTGAATCTCGTCAAAGGCCGCGGTGGCGCTCTCTTGCGAGAGAAAATGGTGGAGGCCGCTTCCGATAAGTTCGTCGTCGTCGTCGATGAAACAAAATTAGTTGACGGCCTCGGTGGAAGCGGCCTCGCGATGCCGGTTGAAGTCGTTCAGTTCTGCTGGAAACACAATTTGGTGAGGCTTCAAGATCTGTTCAAGGACGAAGGTTGCGAGGCTAAGCTCCGATTGGAAGCCGACGGGAAGCCCTACGTCACCGATAACTCGAATTACATAGTTGATTTGTATTTCAAGACTCCGATCAAGGACGGATTGGCCGCCGGTAAAGAGATCTCGGCGTTTGAAGGAGTGGTGGAGCACGGATTGTTCTTGGACATGGCGACCGCCGTAATCATCGCCGGAAAAGATGGAATCGACATCAAAACGAAATGA

Coding sequence (CDS)

ATGGCTTCCCTCTCCTTTATCTCTCCTCCTTCTCTCTCCTCCTCCCGCCATGTTTCCTCCATAGCCAAACTTCTCCTCCGCTCCCCAAAATCCATAAATCTCTCCGCCCGTTGCCGACCTCTCTCCGTCCAAGCCCGCTCCGTCTCCACTCTCACTCAAGACGACCTTAAAAAGCTCGCCGCCGACAAAGCCGTCGAGTATGTCAAGAGCGGCATGGTCCTCGGCCTCGGCACTGGCTCCACCGCCGCCTTCGTCGTCGCCAAGATTGGCGAACTTCTCAAGAGTAATCAATTGAGAGACATTGTTGGAATCCCTACCTCGAAGCGGACGGAGGAGCAAGCTAGGTCATTAGGAATTCCTCTTTCTGTCTTGGACGACCATCCGCATCTCGATTTGGCCATCGATGGCGCTGATGAAGTCGATCCAGATCTGAATCTCGTCAAAGGCCGCGGTGGCGCTCTCTTGCGAGAGAAAATGGTGGAGGCCGCTTCCGATAAGTTCGTCGTCGTCGTCGATGAAACAAAATTAGTTGACGGCCTCGGTGGAAGCGGCCTCGCGATGCCGGTTGAAGTCGTTCAGTTCTGCTGGAAACACAATTTGGTGAGGCTTCAAGATCTGTTCAAGGACGAAGGTTGCGAGGCTAAGCTCCGATTGGAAGCCGACGGGAAGCCCTACGTCACCGATAACTCGAATTACATAGTTGATTTGTATTTCAAGACTCCGATCAAGGACGGATTGGCCGCCGGTAAAGAGATCTCGGCGTTTGAAGGAGTGGTGGAGCACGGATTGTTCTTGGACATGGCGACCGCCGTAATCATCGCCGGAAAAGATGGAATCGACATCAAAACGAAATGA

Protein sequence

MASLSFISPPSLSSSRHVSSIAKLLLRSPKSINLSARCRPLSVQARSVSTLTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGIPTSKRTEEQARSLGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDETKLVDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLEADGKPYVTDNSNYIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK

Homology

[Close]

BLAST of CmaCh05G011930 vs. ExPASy Swiss-Prot
Match: Q9S726 (Probable ribose-5-phosphate isomerase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPI3 PE=1 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 8.4e-106
Identity = 205/289 (70.93%), Postives = 235/289 (81.31%), Query Frame = 0


Query: 1   MASLSFISPPSLSSSRHVSSIAKLLLRSPKSINLSARCRP-----LSVQARSVSTLTQDD 60
           MASLSF+      SS H      L LR+P     S    P      SV+A+SV+ L+QDD
Sbjct: 1   MASLSFV------SSSH------LTLRTPSIALRSTGSSPRTSVSFSVKAQSVA-LSQDD 60

Query: 61  LKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGIPTSKRTEEQAR 120
           LKKLAA+KAVE +K GMVLGLGTGSTAAF V +IG+LL S +L DIVGIPTSKRTEEQAR
Sbjct: 61  LKKLAAEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKRTEEQAR 120

Query: 121 SLGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDETK 180
           SLGIPL  LD HP +DLAIDGADEVDP+L+LVKGRGGALLREKMVEA +DKF+VV D+TK
Sbjct: 121 SLGIPLVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAVADKFIVVADDTK 180

Query: 181 LVDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLEADGKPYVTDNSNYIVD 240
           LV GLGGSGLAMPVEVVQFCW  NL+RLQDLFK+ GCE+KLR++ DGKPYVTDNSNYI+D
Sbjct: 181 LVTGLGGSGLAMPVEVVQFCWNFNLIRLQDLFKEFGCESKLRVDGDGKPYVTDNSNYIID 240

Query: 241 LYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 285
           LYFKTP+KDG AA KEI  F+GVVEHGLFL MAT+VIIAGK+G+++ TK
Sbjct: 241 LYFKTPLKDGFAAAKEIGKFQGVVEHGLFLGMATSVIIAGKNGVEVMTK 276

[Close]

BLAST of CmaCh05G011930 vs. ExPASy Swiss-Prot
Match: Q9ZU38 (Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana OX=3702 GN=RPI2 PE=1 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 2.0e-78
Identity = 149/234 (63.68%), Postives = 183/234 (78.21%), Query Frame = 0


Query: 51  LTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGIPTSKRT 110
           LTQD+LK++AA KAVE+V+SGMVLGLGTGSTA   V +IGELL+  +L +IVGIPTSK+T
Sbjct: 31  LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKT 90

Query: 111 EEQARSLGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVV 170
           +EQA SLGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS KFVV+
Sbjct: 91  QEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVI 150

Query: 171 VDETKLVDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLEADGKPYVTDNS 230
           VD++K+V  +GGS LA+PVE+V FCWK    +L+ L +  GCEA LRL   GK +VTDN 
Sbjct: 151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNG 210

Query: 231 NYIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 285
           NYIVD++ +  + D  A    I    GVVEHG+FLDMA+ VIIAG+ G+ IK K
Sbjct: 211 NYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264

[Close]

BLAST of CmaCh05G011930 vs. ExPASy Swiss-Prot
Match: Q9C998 (Probable ribose-5-phosphate isomerase 1 OS=Arabidopsis thaliana OX=3702 GN=RPI1 PE=1 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.7e-78
Identity = 151/245 (61.63%), Postives = 187/245 (76.33%), Query Frame = 0


Query: 45  ARSVSTLTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGI 104
           A  +S LTQ++LKK+AA KAVE+V+SGMV+GLGTGSTA   VA+I ELL+  +L+DI+GI
Sbjct: 21  APPLSNLTQEELKKIAAYKAVEFVESGMVIGLGTGSTAKHAVARISELLREGKLKDIIGI 80

Query: 105 PTSKRTEEQARSLGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAAS 164
           PTS  T EQA SLGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS
Sbjct: 81  PTSTTTHEQAVSLGIPLSDLDSHPVVDLSIDGADEVDPALNLVKGRGGSLLREKMIEGAS 140

Query: 165 DKFVVVVDETKLVDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLE----- 224
            KFVV+VDE+KLV  +GGSGLA+PVEVV FC      +L++LF+D GC AKLR++     
Sbjct: 141 KKFVVIVDESKLVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFRDSGCVAKLRMKIGSNG 200

Query: 225 ADGKPYVTDNSNYIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGI 284
            +  P VTDN NY+VDLY +  I D   A + I  F GVVEHG+FL MAT +I+AGK G+
Sbjct: 201 EEAAPAVTDNRNYVVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGMATTLIVAGKFGV 260

[Close]

BLAST of CmaCh05G011930 vs. ExPASy Swiss-Prot
Match: Q2JSC9 (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 GN=rpiA PE=3 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.0e-55
Identity = 117/228 (51.32%), Postives = 161/228 (70.61%), Query Frame = 0


Query: 54  DDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGIPTSKRTEEQ 113
           D+LK+ AA  A + V+SGMV+GLGTGSTAAF V  + + ++   L+  +G+PTS+RT EQ
Sbjct: 5   DELKQAAAQAAAQKVQSGMVVGLGTGSTAAFAVGALAQRMQKEGLQ-FIGVPTSERTAEQ 64

Query: 114 ARSLGIPLSVLDDHPHLDLAIDGADEVD-PDLNLVKGRGGALLREKMVEAASDKFVVVVD 173
           ARSLGIPL+ L++ P LDLAIDGADE++   LNL+KG GGALLREK+VEA++ + +++ D
Sbjct: 65  ARSLGIPLATLEEQPRLDLAIDGADEIEVGSLNLIKGAGGALLREKLVEASAAELIIIAD 124

Query: 174 ETKLVDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLEADGKPYVTDNSNY 233
            +K V  L G+   +PVEVV+F WK  L R++ L    GC+A LR  A+G PY+TD  +Y
Sbjct: 125 ASKKVAHL-GTRFPVPVEVVRFGWKTTLARVEAL----GCQAVLRRTAEGDPYLTDEQHY 184

Query: 234 IVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGID 281
           I+D  F  PI +     +++    GVVEHGLF+ MAT  IIAG +GI+
Sbjct: 185 ILDCQF-GPIANPAKLAEQLKGTVGVVEHGLFIGMATEAIIAGPEGIE 225

[Close]

BLAST of CmaCh05G011930 vs. ExPASy Swiss-Prot
Match: B8FL28 (Ribose-5-phosphate isomerase A OS=Desulfatibacillum aliphaticivorans OX=218208 GN=rpiA PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.8e-55
Identity = 121/228 (53.07%), Postives = 155/228 (67.98%), Query Frame = 0


Query: 52  TQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGIPTSKRTE 111
           +QD LKK AA+KAVEY++SGMV+GLG+GSTA F +  I  L+K  +L+DIVGIP+S  TE
Sbjct: 3   SQDALKKQAAEKAVEYLESGMVVGLGSGSTATFAIHAIARLMKEGKLKDIVGIPSSTPTE 62

Query: 112 EQARSLGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVV 171
           E ARSLGIPL   ++H  +D+ IDGADEVDPDLNL+KG GGALLREK+V  A+ K +++V
Sbjct: 63  EVARSLGIPLVGFEEHAVIDVTIDGADEVDPDLNLIKGGGGALLREKVVAQATKKNIIIV 122

Query: 172 DETKLVDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLEADGKPYVTDNSN 231
           DE+K+ D L G+  A+PVEVV F        L+ L    G +  +R    GK + TDN N
Sbjct: 123 DESKISDKL-GTIFALPVEVVPFATASETRFLESL----GAKVTVRENQLGKAFKTDNHN 182

Query: 232 YIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGI 280
            I+D  F  P+ D +  G  +S   GVVEHGLFL     VI+AG DGI
Sbjct: 183 RILDADF-GPMDDAVKIGMALSQRAGVVEHGLFLGTTALVIVAGADGI 224

[Close]

BLAST of CmaCh05G011930 vs. TAIR 10
Match: AT3G04790.1 (Ribose 5-phosphate isomerase, type A protein )

HSP 1 Score: 384.8 bits (987), Expect = 6.0e-107
Identity = 205/289 (70.93%), Postives = 235/289 (81.31%), Query Frame = 0


Query: 1   MASLSFISPPSLSSSRHVSSIAKLLLRSPKSINLSARCRP-----LSVQARSVSTLTQDD 60
           MASLSF+      SS H      L LR+P     S    P      SV+A+SV+ L+QDD
Sbjct: 1   MASLSFV------SSSH------LTLRTPSIALRSTGSSPRTSVSFSVKAQSVA-LSQDD 60

Query: 61  LKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGIPTSKRTEEQAR 120
           LKKLAA+KAVE +K GMVLGLGTGSTAAF V +IG+LL S +L DIVGIPTSKRTEEQAR
Sbjct: 61  LKKLAAEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKRTEEQAR 120

Query: 121 SLGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVVVDETK 180
           SLGIPL  LD HP +DLAIDGADEVDP+L+LVKGRGGALLREKMVEA +DKF+VV D+TK
Sbjct: 121 SLGIPLVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAVADKFIVVADDTK 180

Query: 181 LVDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLEADGKPYVTDNSNYIVD 240
           LV GLGGSGLAMPVEVVQFCW  NL+RLQDLFK+ GCE+KLR++ DGKPYVTDNSNYI+D
Sbjct: 181 LVTGLGGSGLAMPVEVVQFCWNFNLIRLQDLFKEFGCESKLRVDGDGKPYVTDNSNYIID 240

Query: 241 LYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 285
           LYFKTP+KDG AA KEI  F+GVVEHGLFL MAT+VIIAGK+G+++ TK
Sbjct: 241 LYFKTPLKDGFAAAKEIGKFQGVVEHGLFLGMATSVIIAGKNGVEVMTK 276

[Close]

BLAST of CmaCh05G011930 vs. TAIR 10
Match: AT2G01290.1 (ribose-5-phosphate isomerase 2 )

HSP 1 Score: 293.9 bits (751), Expect = 1.4e-79
Identity = 149/234 (63.68%), Postives = 183/234 (78.21%), Query Frame = 0


Query: 51  LTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGIPTSKRT 110
           LTQD+LK++AA KAVE+V+SGMVLGLGTGSTA   V +IGELL+  +L +IVGIPTSK+T
Sbjct: 31  LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKT 90

Query: 111 EEQARSLGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFVVV 170
           +EQA SLGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS KFVV+
Sbjct: 91  QEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMIEGASKKFVVI 150

Query: 171 VDETKLVDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLEADGKPYVTDNS 230
           VD++K+V  +GGS LA+PVE+V FCWK    +L+ L +  GCEA LRL   GK +VTDN 
Sbjct: 151 VDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNG 210

Query: 231 NYIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGIDIKTK 285
           NYIVD++ +  + D  A    I    GVVEHG+FLDMA+ VIIAG+ G+ IK K
Sbjct: 211 NYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264

[Close]

BLAST of CmaCh05G011930 vs. TAIR 10
Match: AT1G71100.1 (Ribose 5-phosphate isomerase, type A protein )

HSP 1 Score: 292.4 bits (747), Expect = 4.0e-79
Identity = 151/245 (61.63%), Postives = 187/245 (76.33%), Query Frame = 0


Query: 45  ARSVSTLTQDDLKKLAADKAVEYVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGI 104
           A  +S LTQ++LKK+AA KAVE+V+SGMV+GLGTGSTA   VA+I ELL+  +L+DI+GI
Sbjct: 21  APPLSNLTQEELKKIAAYKAVEFVESGMVIGLGTGSTAKHAVARISELLREGKLKDIIGI 80

Query: 105 PTSKRTEEQARSLGIPLSVLDDHPHLDLAIDGADEVDPDLNLVKGRGGALLREKMVEAAS 164
           PTS  T EQA SLGIPLS LD HP +DL+IDGADEVDP LNLVKGRGG+LLREKM+E AS
Sbjct: 81  PTSTTTHEQAVSLGIPLSDLDSHPVVDLSIDGADEVDPALNLVKGRGGSLLREKMIEGAS 140

Query: 165 DKFVVVVDETKLVDGLGGSGLAMPVEVVQFCWKHNLVRLQDLFKDEGCEAKLRLE----- 224
            KFVV+VDE+KLV  +GGSGLA+PVEVV FC      +L++LF+D GC AKLR++     
Sbjct: 141 KKFVVIVDESKLVKYIGGSGLAVPVEVVPFCCDFTRGKLEELFRDSGCVAKLRMKIGSNG 200

Query: 225 ADGKPYVTDNSNYIVDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIAGKDGI 284
            +  P VTDN NY+VDLY +  I D   A + I  F GVVEHG+FL MAT +I+AGK G+
Sbjct: 201 EEAAPAVTDNRNYVVDLYLERDIGDLEVASEAILRFPGVVEHGMFLGMATTLIVAGKFGV 260

[Close]

BLAST of CmaCh05G011930 vs. TAIR 10
Match: AT5G44520.1 (NagB/RpiA/CoA transferase-like superfamily protein )

HSP 1 Score: 109.0 bits (271), Expect = 6.3e-24
Identity = 71/221 (32.13%), Postives = 112/221 (50.68%), Query Frame = 0


Query: 67  YVKSGMVLGLGTGSTAAFVVAKIGELLKSNQLRDIVGIPTSKRTEEQARSLGIPLSVLDD 126
           YVKSGM++GLG+G  + F +  +G+ L S  L ++VG+P S R+  +A   GIPL    D
Sbjct: 51  YVKSGMIIGLGSGEASDFAIRYLGQQLGSGSLHNVVGVPMSARSASEAAKYGIPLEYYRD 110

Query: 127 HPHLDLAIDGADEVDPD-LNLVKGRGGA------LLREKMVEAASDKFVVVVDETKLVDG 186
              +D A   AD V+ + L  V GR  +      +L++K +   +D+ V ++ E +   G
Sbjct: 111 GVQIDFAFHDADAVEENTLIAVIGRRRSSQEDDYILKQKSIVKVADEAVFMIKEEQYKAG 170

Query: 187 LGGSGLAMPVEVVQFCWKHNLVRLQDLF-KDEGCEAKLRLEADGK-----PYVTDNSNYI 246
           L GS   +PV V    W      + DL+  D     +  +E +G      P VT + + I
Sbjct: 171 LEGS---IPVLVQSLNWLAIAEEIDDLYLGDAEVWRRASVENEGPLGGDFPIVTSDGHNI 230

Query: 247 VDLYFKTPIKDGLAAGKEISAFEGVVEHGLFLDMATAVIIA 275
           +D+ F TPI+        +   +GVV+HGL +     V+IA
Sbjct: 231 LDVIFTTPIRSLADLATSLDKIDGVVDHGLIIKTRCTVVIA 268

The following BLAST results are available for this feature:

BLAST of CmaCh05G011930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S726	8.4e-106	70.93	Probable ribose-5-phosphate isomerase 3, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9ZU38	2.0e-78	63.68	Probable ribose-5-phosphate isomerase 2 OS=Arabidopsis thaliana OX=3702 GN=RPI2 ...	[more]
Q9C998	5.7e-78	61.63	Probable ribose-5-phosphate isomerase 1 OS=Arabidopsis thaliana OX=3702 GN=RPI1 ...	[more]
Q2JSC9	1.0e-55	51.32	Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) OX=321327 ...	[more]
B8FL28	1.8e-55	53.07	Ribose-5-phosphate isomerase A OS=Desulfatibacillum aliphaticivorans OX=218208 G...	[more]

BLAST of CmaCh05G011930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04790.1	6.0e-107	70.93	Ribose 5-phosphate isomerase, type A protein	[more]
AT2G01290.1	1.4e-79	63.68	ribose-5-phosphate isomerase 2	[more]
AT1G71100.1	4.0e-79	61.63	Ribose 5-phosphate isomerase, type A protein	[more]
AT5G44520.1	6.3e-24	32.13	NagB/RpiA/CoA transferase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004788	Ribose 5-phosphate isomerase, type A	TIGRFAM	TIGR00021	TIGR00021	coord: 56..279 e-value: 2.4E-79 score: 263.7
IPR004788	Ribose 5-phosphate isomerase, type A	PFAM	PF06026	Rib_5-P_isom_A	coord: 102..278 e-value: 1.7E-62 score: 210.1
IPR004788	Ribose 5-phosphate isomerase, type A	CDD	cd01398	RPI_A	coord: 56..275 e-value: 2.53622E-102 score: 295.535
None	No IPR available	GENE3D	3.30.70.260		coord: 179..262 e-value: 1.7E-80 score: 271.4
None	No IPR available	GENE3D	3.40.50.1360		coord: 56..278 e-value: 1.7E-80 score: 271.4
None	No IPR available	PANTHER	PTHR43748	RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED	coord: 4..284
None	No IPR available	PANTHER	PTHR43748:SF3	RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED	coord: 4..284
None	No IPR available	SUPERFAMILY	75445	D-ribose-5-phosphate isomerase (RpiA), lid domain	coord: 185..265
IPR020672	Ribose-5-phosphate isomerase, type A, subgroup	HAMAP	MF_00170	Rib_5P_isom_A	coord: 53..282 score: 30.851774
IPR037171	NagB/RpiA transferase-like	SUPERFAMILY	100950	NagB/RpiA/CoA transferase-like	coord: 52..235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G011930.1	CmaCh05G011930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009052	pentose-phosphate shunt, non-oxidative branch
molecular_function	GO:0004751	ribose-5-phosphate isomerase activity