CmaCh05G011870 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G011870
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Zeta-carotene desaturase
Location	Cma_Chr05: 9202976 .. 9207862 (-)
RNA-Seq Expression	CmaCh05G011870
Synteny	CmaCh05G011870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGCGGGACTGGCTGGACGAAATCGGAGAAGAGCTGAGCGTCGCCGGAGGCACTGTCTCCAAGAGAACAATGACCGGAATCTGTTACTGCCCACCGCTTCCCCCATCTCTATCCCCCAAGGTTTGTATCTTCTAGGCCCGTGGTTTCATTTCATCCCGCCGTCCTTTTCTGTTCCTAATTCTCTCCGATTCATTCTGAATCATTCGTTTAGTAGATGGTAACCGCCATACGATGCTTCTCAAGCTCGCCGGAGAATTCTAATGGTAGCCGGAAGAAAGAGGCATCTGCGATTGTGAAAATCGCCGTGAGTGGAGCCACAGAGCTTCTTAGGCTTTTCTCGTCTCCGATCAGTAAGAGGTAATTTCGTTCTTGAAATCCACGCTCGCTTTGTAGTTGCATGAATAGTTTTCTTGAACATGCGAGGGAGAGATATGAATTCGATTCTGGTCCGTGTCTGTGTTGCAGAGTTAATGGAGTTGGGGACAATCAGGGAGAGGAATTTGTAGTTGCAGGCATTGATGATGTTCTAAATATCCTGAAATCAGATTATGAGAATGCTTACTTTGTTACTGGTATATTCATATATTTTCCTTTATCATGCTTTTTCATTGTGCTTATACCTGCACTAGAATTATGAAATCTTCTGCTCATTGCCATCTGTTCATGCTATTGGTATAATAAATTCTATGCAATTTCTTGCTTACAATTTATACATTGAGATGGTAAAGCTGCAAATTAGATGACCCTTATTGAGGAGGTGCTCGAGTTCACCTTTTTGAGTGAGGGGCAAATTTTTGTGGCGAACTAGCTTCTTTGCAATTCTATGTGAAGCTTGGCTCGAGAGGAACAATAGGATTGTTAGAGAGGTGGGGAGGTCGTGTGATGAGGATTGGGAGGTGCTCGAGTTCATCTTTTTGGGAGGGGCGATTTTTTGTGTCGAACTAGCTTCTTTGCAATATTATGTGGAGCTTGGCTTGAGAGGTACAATAGGTTTTTTAGAGAGGTGGGGAGGTCGTGTGATGAGGATTGGGAGGTGCTCGAGTTAACCTTTTCGGGTGAGGCGCAATTTTTTGTAGCGAACTAGCTTCTTTGCAATACTATGTAGAGCTTAGCTCGAGAGGAACAATAGGATTTTCAGAGAGGTGGGGAGGTTGTGTGATGAGGATTGGAAGGTGGTGCGATACAATGCCTTCTCGTGGGGTTCGGTCACTAGATCTTTTTGTAATTACAACCTTAGTTTGATTTCGTCAAATTAGAGTCCTTTTTTTTGTAGTTTTTTTTTGGGGTCTCCCTCGTTTTGTTGGTCTGGATTTTTTTTTTTTTTTTTTTTTTTTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTGTATGCCTTGTGCATTATTTTATCTCTATGAATGAAAGCTTGATTTCTTATCATATATATATACTTTGAATTGTTGCTGTGTGTAACTGCTGCATTAAACCAGCAATGAAGCTTTGTAACTGTATTTTATGATGGGCTTATACTGAAAACAGGGATATTCACTTCTGCAATTTATGCTGACGATTGTCTCTTTGAAGATCCAACCATCAGGTTTCGAGGTAATAATAATCACAGAAACTTTTAGTAACTAAATTGTGTAGTCCTCCATCACAATGGCTGTAATAGCCCAAGCTCACCATTAACAGATATTGTCCTCTTTGAACTTTTCCTTTCGATTTTTTCCTCAAGGTTTTTAAAACACGTCTGCTAGAGAGAGGTTTCCACACCCTTATAAATAATGTTTCGTTCCCCTCTCCAACCGACGTGGGATCTCACAATCCACCCCCTTTGGGGCCAGTGTCTTCACTGACACTTGTTCTCCTCTCCAATCGATGTGGGCTCTCACAATTCACCCCCCTCGAGGCTCAGCGTCCTCGCTGGCACACTGCTCGGTGTCTGACTCTGATACCATTTGTAACAGCCGAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGACTTTCCCTTTCGGGCTTTTCCACAAGGTTTTTAAAACGTGTCTGCTAGGAAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCCCCTCTCCAATCGATGTGGGATCTCACATCCACACCCCTTTGGGGCCTAGCATCCTCGCTAGCACTCGTTCTCCTCTCCGATCGATGTGGGATTTCATAGTGACAATCCTATTTTCAACTTTTATGTTACCAAATACCAAAGATTACATTAACTCAAAATTAGAAGGCATGCATTGTTTCTTATTCTGCTAAGAAATGAAATGTAATTTATAAACACTTAGTTTCTAAACACATTTGACTTTTGATTGAATACTTCAATTTAGCAATCTTTTCAAACCTTAAAGTTGCTTTATGGATTTTTAACCCTCTAGGTAAGGAGCTGTATTCACGGAATCTAAAGTTACTTGTCCCCTTTTTTGACTGTCCCTCAATCCAGTTACAAACGATCAATAAGGTAATTTGTTCTCGTGATTGAATCCTTCTTCTTCCGTAGATCAATGAGTTGGCCTTTTCGGCACAAATCTTTTAAATTTCAACCTGCTGCTTTTATGCTTTCATGGGGGGCAAAATTTTATTGAACTTTTGGTAAATCTAGGGGATGTATATGGCAGCTAAGAACGGGACGAGTGAGTAGCATCTCATCTTCTTCATGGATAAAACGTTTGGTTTTTCCAAAGAGTGTAATATTTTATTTTATAGCTTTAAAATAAACGTTTTATCCTTTCTTAATATGAGACAGATAAACACCAAATAATCTGTTCTTGGAAAATTGATCTTTGTCTGCTGCACATCCAGTTTAACCGCCCAAGCCCACCACTATCAGATATTGTCCTCTTTGGGCTTTCCCTTTTGGGCTTCCTCTCAAGATTTTTAAAACGTGTCTGTTAGAGAGAGGTTTTTACAACCTTAAAAAGAATACTTAGTTCTTCTCCCCAACTGATGTGGGATCTCACAATCCACCCCTTCGAAATTCCTTAGAAGACTTTTGCTGATTTTCATGATATACATGATTACAGGGTAACAAATCTGGAGTTGAATTTGTGCTGGCAGCCTGGAAACTAAGGTAGGTAGCCAATTATTTTGAATTGCTTGAGGCTTTGGAGTGTTGGGATCCTTTCATTTCTGACTTTGAGGCTTTTCCTTGTGTTAATTCCAAAAGATTATTGATATCTACAGAGACTAAATTGGGTTGAATGCAACCCAAATCACAAGGACTAATATGCCTTGTAATTGGAATTGCATTGGTTCTTTCTGTTGGTATTTTCAATCTATTTCATCATTTGCTTTCAAATTCTGGACGTTGCCTGAGTTATTTAAGCTCTCCCACATCCGTAGAAATTCCCAATATTTATTATTAGCTTGCAGGACATACCTGAAACTTCCTTGGAGGCCACTCATTTCTATTGATGGAAGTACACTCTATGAACTTGATGAAGAGTTGAAAGTGAGAATCAGTAATCCTCTCCGCTATGTTCTTAAGATGGTTTTAGAATAAGTATCTTTTCAAGTTTCTAAAAAATTTATTTCAAGTTTTGTAACCACCCAAGCCCACCGAGATATTGTTTTCTTTGGCTTTCCCTTTCGGGCTTCCCCTTAAGGTTTTTAAAACGCGTTTATTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCTCCAACCGATGTGAGATCTCACAATCCATCCCCGTTCAGGGTCCAGTGTGCTCTCTGCACTCATTCCCCTCTCCAATCGATGTGGTATCTCACAATCCACGTCCCTTCGGGGCCCAGCATCCTCGTTGGCATTCACTCCTCTCTCCGATCGATGTGGGATCTCGCAATCTATGCCCCTTTGGGGCCCAACATCCTTGTTGGCACACCACCTGGTGTTCACCCCCTTTGGGGCTCAGCATCGTCGCTAGCACACTGCCCGGTGTCTTGCTTTGATACCATTTGTAGCAGCTCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGTTTTCCCTTTTGGGCTTGTTTTTATAACGCGTCTGCTAGGGAAAGGTTTCTACACCCTTATAAATAATGTTTTGTTCCCCTCTCCAACCAATGTGGGATCTCACAAGTTTTGTGCTGAAACACATTTTCTGATTTGCTCCTTTCTTTTTCAACTACTAACTAAAAACTAAGCTCTCGTTGGATAACCATTTCATTTTTAGTTTTCTATTTTTAGAGATTGTGTTTATTTGCTCATAATTTCTTGAACACAATCTGAATCTTTCTGGAAAAACGATAACGATGATGTTTCTTAGATAGTTTCTTTTTTGTTATATGGCATTCAAATATTTGATTGCTTTCCATTTCTCATCCTATCAGATAGCAAGGCATGCTGAGAGCTGGAGTGTTTCCGCACTTGAAGCAATAACTCAGATATTCATACCTAGTTTTAAAGGAGACTGA

mRNA sequence

TTCGCGGGACTGGCTGGACGAAATCGGAGAAGAGCTGAGCGTCGCCGGAGGCACTGTCTCCAAGAGAACAATGACCGGAATCTGTTACTGCCCACCGCTTCCCCCATCTCTATCCCCCAAGATGGTAACCGCCATACGATGCTTCTCAAGCTCGCCGGAGAATTCTAATGGTAGCCGGAAGAAAGAGGCATCTGCGATTGTGAAAATCGCCGTGAGTGGAGCCACAGAGCTTCTTAGGCTTTTCTCGTCTCCGATCAGTAAGAGAGTTAATGGAGTTGGGGACAATCAGGGAGAGGAATTTGTAGTTGCAGGCATTGATGATGTTCTAAATATCCTGAAATCAGATTATGAGAATGCTTACTTTGTTACTGGGATATTCACTTCTGCAATTTATGCTGACGATTGTCTCTTTGAAGATCCAACCATCAGGTTTCGAGGTAAGGAGCTGTATTCACGGAATCTAAAGTTACTTGTCCCCTTTTTTGACTGTCCCTCAATCCAGTTACAAACGATCAATAAGGGTAACAAATCTGGAGTTGAATTTGTGCTGGCAGCCTGGAAACTAAGGACATACCTGAAACTTCCTTGGAGGCCACTCATTTCTATTGATGGAAGTACACTCTATGAACTTGATGAAGAGTTGAAAATAGCAAGGCATGCTGAGAGCTGGAGTGTTTCCGCACTTGAAGCAATAACTCAGATATTCATACCTAGTTTTAAAGGAGACTGA

Coding sequence (CDS)

ATGACCGGAATCTGTTACTGCCCACCGCTTCCCCCATCTCTATCCCCCAAGATGGTAACCGCCATACGATGCTTCTCAAGCTCGCCGGAGAATTCTAATGGTAGCCGGAAGAAAGAGGCATCTGCGATTGTGAAAATCGCCGTGAGTGGAGCCACAGAGCTTCTTAGGCTTTTCTCGTCTCCGATCAGTAAGAGAGTTAATGGAGTTGGGGACAATCAGGGAGAGGAATTTGTAGTTGCAGGCATTGATGATGTTCTAAATATCCTGAAATCAGATTATGAGAATGCTTACTTTGTTACTGGGATATTCACTTCTGCAATTTATGCTGACGATTGTCTCTTTGAAGATCCAACCATCAGGTTTCGAGGTAAGGAGCTGTATTCACGGAATCTAAAGTTACTTGTCCCCTTTTTTGACTGTCCCTCAATCCAGTTACAAACGATCAATAAGGGTAACAAATCTGGAGTTGAATTTGTGCTGGCAGCCTGGAAACTAAGGACATACCTGAAACTTCCTTGGAGGCCACTCATTTCTATTGATGGAAGTACACTCTATGAACTTGATGAAGAGTTGAAAATAGCAAGGCATGCTGAGAGCTGGAGTGTTTCCGCACTTGAAGCAATAACTCAGATATTCATACCTAGTTTTAAAGGAGACTGA

Protein sequence

MTGICYCPPLPPSLSPKMVTAIRCFSSSPENSNGSRKKEASAIVKIAVSGATELLRLFSSPISKRVNGVGDNQGEEFVVAGIDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIRFRGKELYSRNLKLLVPFFDCPSIQLQTINKGNKSGVEFVLAAWKLRTYLKLPWRPLISIDGSTLYELDEELKIARHAESWSVSALEAITQIFIPSFKGD

Homology

[Close]

BLAST of CmaCh05G011870 vs. TAIR 10
Match: AT3G04890.1 (Uncharacterized conserved protein (DUF2358) )

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-59
Identity = 113/191 (59.16%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 23  RCFSSSPENSNGSRKKEASAIVKIAVSGATELLRLFS-SPISKRVNGVGDNQGEEFVVAG 82
           RCFS SPE       K+  A++K AVSG TE LRL S +P S  +    D    E     
Sbjct: 24  RCFSGSPE-------KKTPAVLKWAVSGVTEFLRLISGAPSSTSIATNKDRSKNEVTAGD 83

Query: 83  IDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIRFRGKELYSRNLKLLVPFFDCP 142
           +DDV+ IL+SDY N YFVTG+ TSAIY+DDC+FEDPTI F+G ELY RNLKLLVPF +  
Sbjct: 84  VDDVMGILRSDYRNFYFVTGVLTSAIYSDDCIFEDPTISFQGTELYERNLKLLVPFLEDA 143

Query: 143 SIQLQTINKGNKSGVEFVLAAWKLRTYLKLPWRPLISIDGSTLYELDEELKIARHAESWS 202
           SI+LQ + K   S   ++LA WKLRTYLKLPWRPLISI+G+T+Y+LD++ KI RH ESW+
Sbjct: 144 SIELQNMEKSESSQRNYILATWKLRTYLKLPWRPLISINGNTVYDLDKDFKIVRHVESWN 203

Query: 203 VSALEAITQIF 213
           VSALEAI QIF
Sbjct: 204 VSALEAIGQIF 207

[Close]

BLAST of CmaCh05G011870 vs. TAIR 10
Match: AT3G04890.2 (Uncharacterized conserved protein (DUF2358) )

HSP 1 Score: 196.1 bits (497), Expect = 3.0e-50
Identity = 97/171 (56.73%), Postives = 120/171 (70.18%), Query Frame = 0


Query: 23  RCFSSSPENSNGSRKKEASAIVKIAVSGATELLRLFS-SPISKRVNGVGDNQGEEFVVAG 82
           RCFS SPE       K+  A++K AVSG TE LRL S +P S  +    D    E     
Sbjct: 24  RCFSGSPE-------KKTPAVLKWAVSGVTEFLRLISGAPSSTSIATNKDRSKNEVTAGD 83

Query: 83  IDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIRFRGKELYSRNLKLLVPFFDCP 142
           +DDV+ IL+SDY N YFVTG+ TSAIY+DDC+FEDPTI F+G ELY RNLKLLVPF +  
Sbjct: 84  VDDVMGILRSDYRNFYFVTGVLTSAIYSDDCIFEDPTISFQGTELYERNLKLLVPFLEDA 143

Query: 143 SIQLQTINKGNKSGVEFVLAAWKLRTYLKLPWRPLISIDGSTLYELDEELK 193
           SI+LQ + K   S   ++LA WKLRTYLKLPWRPLISI+G+T+Y+LD++ K
Sbjct: 144 SIELQNMEKSESSQRNYILATWKLRTYLKLPWRPLISINGNTVYDLDKDFK 187

[Close]

BLAST of CmaCh05G011870 vs. TAIR 10
Match: AT2G46100.1 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-16
Identity = 59/207 (28.50%), Postives = 91/207 (43.96%), Query Frame = 0


Query: 20  TAIRCFSSSPENSNGSRK--KEASAIVKIAVSGATELLRLF--------SSPISKRVNGV 79
           T + C   +P +   + K  +  + ++KIA  G +ELL +         +SPI       
Sbjct: 35  TGVSCRGQNPTDEPQTSKGPEPDNVLLKIAWYG-SELLGIAASVFRSPETSPIVTGFEVP 94

Query: 80  GDNQGEEFVVAGIDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIRFRGKELYSR 139
            D  G    VA +D +    K D++ +YFVTG  T  +Y + C F DP   F+G   + R
Sbjct: 95  VDCSGRAVRVAVVDSI----KQDFKRSYFVTGNLTPEVYEEKCEFADPAGSFKGLARFKR 154

Query: 140 NLKLLVPFFDCPSIQLQTINKGNKSGVEFVLAAWKLRTYLKLPWRPLISIDGSTLYELDE 199
           N        +  +++L         G+      WK    +  PW+P++S  G T Y  D 
Sbjct: 155 NCTNFGSLIEKSNMKLMKWENFEDKGI----GHWKFSCVMSFPWKPILSATGYTEYYFDT 214

Query: 200 EL-KIARHAESWSVSALEAITQIFIPS 216
           E  KI RH E W+V  +    Q+  PS
Sbjct: 215 ESGKICRHVEHWNVPKIALFKQLLRPS 232

[Close]

BLAST of CmaCh05G011870 vs. TAIR 10
Match: AT2G46100.2 (Nuclear transport factor 2 (NTF2) family protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.3e-05
Identity = 36/121 (29.75%), Postives = 56/121 (46.28%), Query Frame = 0


Query: 20  TAIRCFSSSPENSNGSRK--KEASAIVKIAVSGATELLRLF--------SSPISKRVNGV 79
           T + C   +P +   + K  +  + ++KIA  G +ELL +         +SPI       
Sbjct: 35  TGVSCRGQNPTDEPQTSKGPEPDNVLLKIAWYG-SELLGIAASVFRSPETSPIVTGFEVP 94

Query: 80  GDNQGEEFVVAGIDDVLNILKSDYENAYFVTGIFTSAIYADDCLFEDPTIRFRGKELYSR 131
            D  G    VA +D +    K D++ +YFVTG  T  +Y + C F DP   F+G   + R
Sbjct: 95  VDCSGRAVRVAVVDSI----KQDFKRSYFVTGNLTPEVYEEKCEFADPAGSFKGLARFKR 150

The following BLAST results are available for this feature:

BLAST of CmaCh05G011870 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G011870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04890.1	1.2e-59	59.16	Uncharacterized conserved protein (DUF2358)	[more]
AT3G04890.2	3.0e-50	56.73	Uncharacterized conserved protein (DUF2358)	[more]
AT2G46100.1	1.3e-16	28.50	Nuclear transport factor 2 (NTF2) family protein	[more]
AT2G46100.2	2.3e-05	29.75	Nuclear transport factor 2 (NTF2) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018790	Protein of unknown function DUF2358	PFAM	PF10184	DUF2358	coord: 84..196 e-value: 1.1E-21 score: 77.2
None	No IPR available	PANTHER	PTHR34123:SF4	PHOSPHORIBOSYLTRANSFERASE-LIKE PROTEIN, PUTATIVE (DUF2358)-RELATED	coord: 12..215
None	No IPR available	PANTHER	PTHR34123	FAMILY NOT NAMED	coord: 12..215
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 106..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G011870.1	CmaCh05G011870.1	mRNA