CmaCh05G010640 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G010640
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTrafficking protein particle complex subunit
LocationCma_Chr05: 8446930 .. 8450522 (+)
RNA-Seq ExpressionCmaCh05G010640
SyntenyCmaCh05G010640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGTAATCAACCAATGGAAACTACTTATTAATGCAATTAGAAACTAGATTCTGCTAGTTCCCATCTGGATTGGGAGTTTTGATGCTTAATTTGGTATCTGAAACGAAAAACAAATATGAACCCCAAATCATGATCCCAGTTTGTTCATCAGATTTTCAATCGACCTTTCTTTTACTTATGAATTATAAACTGGTTACGGGTGGAATTCTTTTAATCTTCGGATTGAATCTCTTATTGGCTTGTTTGAAAATTTAGGATTATGGATCTGCTGGACGAATGGACACAAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCCGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGGTACATTTTTTCTTCCACTACTTTGTTTAATTTGTGCTTTAAACGCATGGATTCTGTCTCAAACTATGTTCCAAAGACACGCAATCAAATTCCTAATGTGAAAGCACAATTGAAGTTCTAGGAACCTTATTGATCTTTTGTGAGATCTTATATCGGTTGGAGAGAGAGGAACGAAACACTCCTTATAAGGGTGTGGAAACCTCCCCCTAGTAGACACATTTAAAACCTTTAGGGGAAGCCTGAAAAGGAAAATCTAAAGAGAACAATATCTGCTAGCTGTGACTTGGACTATTATGAATGATATCAGAGCCATACACCGAGTAATGAGCTAGCAAGGACGCTGGCCCCCAAGAAGGTGGATTGTGAGATCCTACATCGGTTAGAGAGGGGAACAAATCATTCCTTATAAGGGTGTGGAAACCTCTCTCTACCAGACATGTTTTATTAAAACCTTAAGGGGAAGCCCGAAAGGGAAAGTCTAAAGAAAACAATATCTACTAGCAGAAGGCTTGAGCAGCGAGGACGTTTTCCCCTATAAGGGGGGTGGATTGTGAGATCTTACATAAGTTGAAGAGGGGAACGAAACATTTCTTATAAAGATGTGGAAACCTCTCCCTAGTAGATGCGTTTTAAAACCTTGAGGGGAAGCTCGAAAGGGAAAACTAAAAAAGGACAATATCTGCTAGTAGTGGGCTTGGGCTGTTACATCTTTCTAGTTGAGATTATAATGCCTTAACTTTCATGATATATTCATTTTCTAGTTCTTAGTTATGAAGCTGAATCATGGATGAACTTGGCTGTTATAGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGAACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGATGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGGTCGATGAGCTTTCGATATCCTTCATTTTGCCAGTATTAACCATCCACAATTCAAGAAAGAAGGCTCATGATATTGTTGTCCAAATACTTGATAATTTGCCTGCTAAATGTACTCCATGAATAGTGACTCGTTTGATATTTGGTGGAAATAGAATGGTCCTTTTCTGAGTTCACTGGATAATCATGGTTAATTTTATATCCAATTTTCTGAATGATTAACGTTTGATCAGTTTAGATAAAAGAATGCATCCATTTCATGATTTTCATCACTGAATGCATCTGTAGTTGGGACATGTTTTCATCTGCCTGATCTGACTGCAACCAATTGTGCAGGCTTGAAGTTGCACTATGAACTGATAGGTATTGGAAGCATTTCTCAGAACTTGGTCATTTGCTATCAAGGTCAGGCCAATATCATCTGCTAAATTTTCCAAGTTTATCTCTTTTCTTTTTCTAGAGATTACATATGTTGAAGAATCGACTACAAAGTTATTTTGTAACAGCCAACTGCTAGTAGATATTGTCCCGTATTCTTTTCTGGGGCCCTGCATTCTCGTTGACACTCGTTCTCCTCTTCAATCGATGTAGGATCTCACAATCCACCTCCCTTTGGGGCCCAACATTCTCGCTGAAACTCGTTCCCCTCTTCAATCAATGTAGGATCTCACACTCCACCTCCCTTTGGGGCCCAGCGTCCTCGCTGGCACTCATTCCCCTCTCCAATCGATGTGGGATATCAAATCCACTCCCCTTCGGGGCCCAACGTCCTTGCGGGCACTCGTTCCTCTATCCAATCAACATGGGATCTCAAATCCACCTCCCTTCAGGATCAGCGTTCTCGCTGACACTCGTTCCCCTCTCCAATCGACATGGGACTCACAATCCACCTCCTTTGTGCCCCGCGTCCTCGTTGACACTCGGTCCTCTCTCCAATCGATGTGGGATCTCACAATTCACCCCTCCTTCAGGGCCCAATGTCCATCCACCTCCGTTGGGGCCCAGCGTTCTCGTTGGCACTCGTTCCTCTCTCCAATCGACGTGGGATCTCACAATCCACCTCCTTTGGGGCCAGCGTCCTCGTTGGCACTTGTTCCTCTTTCCAATCGATGTGAGATCTCACAATTCACCCCTCTTCATGGCCCAATGTCCATCCCCCTTTGGGGCTCAGCGTCCTCGCTGGCATATCGCCTGGTGTCTGACTCTAATACCATTTGTAACAGTCCAAGACCACTACTAGCCGATATTGTCCTCTTTGACATTCCTTTAAAGGGGAGCTAGGAGATATTGCCTTCTTTGGTTTCTGGCTTCTCTAAAAGGGGACTTAGCAGATATTGTCACATCTTTGGGCTTTTCCTTTCGGGCTTTTCATAAGAGTTTTAAAACGCGTTTGCTAGGGATAGGTTTCCACGCTTTTATCAAGAATGTTTTGTTCCCTTCTCCAACCTAGTGGGATCTCACATGTTTAAACTTTGTTCATCAAGCAAACTCAAAACAAAATAATAAAAACAAGAAGGGACAGAGCAAACAAAACTATCGCGATTATTTTTATTCCATTAGGAATCAGATATGATTCTTTTTCTGACATACTTGAATACAAAAGAGATTATCAGCTCTCGCTTATATCAAAGATTTACTGAATGAGGGCATTAGCAGTAGCATAGTGATTTACACTCATTGAAATATCACAGCTTAGGATCATACGTTTGTTCATGACCTCAATATCCAATGAGTTGATTCTGATGGCTTGACTACACCTTTGAACAAGTTTCTTTGATGTTACCAATGGATGATTATCTCTGAAAATCTTCTTCCGTGAGAACTTGAAGGCTTTCTGGATATGTGCTTGAATTTCATGGTAATACTTCACACAATGCTTGAAACTCTTCTTCAGCTTAGGATCACTCTCATTCTTACTTAATTTGGAGAAGAAATCAAGGTTTTGATCGGCTTGGTTCATCGTCAGATTGATGGATATAAGCGAGAGCTTAGGGAGGTCAGCCGAGATGGTACCGGGAACGTTACCAAGGATTCTCTGGCAACTGAACGGATCGGGGGTTTTATAGCAAATGGTGGCCAGATTTCCATGGAGGATTCCATGAGAAGGGAAAATGGCTAG

mRNA sequence

ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGATCTGCTGGACGAATGGACACAAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCCGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGAACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGATGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGAAATCAAGGTTTTGATCGGCTTGGTTCATCGTCAGATTGATGGATATAAGCGAGAGCTTAGGGAGGTCAGCCGAGATGGTACCGGGAACGTTACCAAGGATTCTCTGGCAACTGAACGGATCGGGGGTTTTATAGCAAATGGTGGCCAGATTTCCATGGAGGATTCCATGAGAAGGGAAAATGGCTAG

Coding sequence (CDS)

ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGCTTGATCTTCTACAAGGATTATGGATCTGCTGGACGAATGGACACAAACGATAGCTTGAGAGTGGCGAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTATTTCCGGTTGTTCGGGTACTGAACTCCTTGAAGCCGACACATTCGACCTCCATTGCTTCCAGTCACTTACTGGAACAAAGTTTTTTGTTGTGTGTGAGCCTGGAACACTGCACATGGAGGGTCTTCTGAAGTACATTTATGAGTTATACACAGATTATGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCTATTCGATGTGAGCTCTTTGATATCAACCTAGTGCAGGCAGTGCAAAAGGATCGTGTTGCTTTGCTTGAAATCAAGGTTTTGATCGGCTTGGTTCATCGTCAGATTGATGGATATAAGCGAGAGCTTAGGGAGGTCAGCCGAGATGGTACCGGGAACGTTACCAAGGATTCTCTGGCAACTGAACGGATCGGGGGTTTTATAGCAAATGGTGGCCAGATTTCCATGGAGGATTCCATGAGAAGGGAAAATGGCTAG

Protein sequence

MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQKDRVALLEIKVLIGLVHRQIDGYKRELREVSRDGTGNVTKDSLATERIGGFIANGGQISMEDSMRRENG
Homology
[Close]
BLAST of CmaCh05G010640 vs. ExPASy Swiss-Prot
Match: Q54UU1 (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=trappc4 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-33
Identity = 66/125 (52.80%), Postives = 91/125 (72.80%), Query Frame = 0 

Query: 4   IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISG-CSGTELL 63
           I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP+SG  SG E++
Sbjct: 3   INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 64  EADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCEL 123
           E + F L CFQ+ TG KF+V+ +P    +E LL  +YELYTDYVLKNPFYE+EM IRC+L
Sbjct: 63  ETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDL 122

Query: 124 FDINL 128
           FD  L
Sbjct: 123 FDYKL 127

[Close]
BLAST of CmaCh05G010640 vs. ExPASy Swiss-Prot
Match: Q2TBL9 (Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 133
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of CmaCh05G010640 vs. ExPASy Swiss-Prot
Match: Q9ES56 (Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 133
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of CmaCh05G010640 vs. ExPASy Swiss-Prot
Match: Q69BT7 (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 60/106 (56.60%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 133
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of CmaCh05G010640 vs. ExPASy Swiss-Prot
Match: Q9Y296 (Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.7e-29
Identity = 59/106 (55.66%), Postives = 80/106 (75.47%), Query Frame = 0 

Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPISGCSGTELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG E+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 87  GTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRCELFDINLVQAVQ 133
               ++ LL+ IYE+Y+D+ LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]
BLAST of CmaCh05G010640 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 261.9 bits (668), Expect = 4.1e-70
Identity = 126/139 (90.65%), Postives = 131/139 (94.24%), Query Frame = 0 

Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60
           MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP++GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSL GTKFFVVCEPGT HME LL+YIYELYTDYVLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLVQAVQKDRVALL 140
           ELFDINL QAVQ DRVALL
Sbjct: 121 ELFDINLTQAVQSDRVALL 139

[Close]
BLAST of CmaCh05G010640 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 0 

Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS-------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P++        
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  ------GCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLK 124
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY +YV+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLVQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

[Close]
BLAST of CmaCh05G010640 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 40/144 (27.78%), Postives = 69/144 (47.92%), Query Frame = 0 

Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPIS-------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P++        
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  ------GCSGTELLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLK 124
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY +YV+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLVQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

The following BLAST results are available for this feature:
BLAST of CmaCh05G010640 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q54UU15.2e-3352.80Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44... [more]
Q2TBL91.2e-2956.60Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 ... [more]
Q9ES561.2e-2956.60Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trapp... [more]
Q69BT71.2e-2956.60Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=... [more]
Q9Y2962.7e-2955.66Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC... [more]
BLAST of CmaCh05G010640 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02280.14.1e-7090.65SNARE-like superfamily protein [more]
AT1G51160.11.7e-1027.78SNARE-like superfamily protein [more]
AT1G51160.21.7e-1027.78SNARE-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007233Trafficking protein particle complex subunitSMARTSM01399Sybindin_2coord: 4..134
e-value: 1.2E-68
score: 244.0
IPR007233Trafficking protein particle complex subunitPFAMPF04099Sybindincoord: 4..133
e-value: 4.0E-51
score: 172.7
IPR007233Trafficking protein particle complex subunitPANTHERPTHR23249TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNITcoord: 1..139
NoneNo IPR availableGENE3D3.30.450.70coord: 2..133
e-value: 6.4E-47
score: 161.5
NoneNo IPR availablePANTHERPTHR23249:SF17TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT-RELATEDcoord: 1..139
NoneNo IPR availableCDDcd14856TRAPPC4_synbindincoord: 5..130
e-value: 4.69045E-84
score: 242.809
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G010640.1CmaCh05G010640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0030008 TRAPP complex