CmaCh05G010300 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G010300
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	F-box protein SKIP1-like
Location	Cma_Chr05: 8264704 .. 8266988 (-)
RNA-Seq Expression	CmaCh05G010300
Synteny	CmaCh05G010300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTATAATATGGCGCGCATCTCGTCAAGGGGAAAGAGAAATAGAACTCTTTTATTATCCTCATAGCTTTCTGTATTCCTAAATTCCTAAGGTCACACAAGACATGGCAGAGGCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCATCGAGCAGCGGTGGCGCGGACCCATGCTCGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCGACCTCCAACCCAGGTTCGACTCGACCCCCACCGAGTCCCCGGCCTGGTGGTCGCCCCAATTCGAGACCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTAATTAATTCACTTCTTCTTCTTCTTCTTCTTCTTTAAATTTTAATTATAATTATCATGAAGCTTTTATTGTTCAATTAGGGTAAAAGATTTCCCTTATTGTTTGGTGTTTTTCCCTCTTCAGCAAGCACTTTGCCTGTGAATTTTATGATCAAGTCAATTAAAAACTATAACATGATCTTTGCATCTGTTTTAACCAATCAATGTGCAGTTTTTTTAGAATAAAAATTGTTGGATAACACATTCAATAGGCTTGAAAATCCCAATTGGCTAGGTATGTATGTACTGAATACACCTTGTAAAAAGGATTTCTTGTTTTGGAAACATCCTTTTCTTTATTCTCTTTGGTTGGTCCTTTTCTTGTTGGTTGGATATGCAAAACTGTAGCATAAGTGTGAATTTTTATATAAATTTTGCTATAGAGATCCCACGTCGGTTGGAGAGAGGAACGAATCATTCCTTATAAGGGTGTGAAACCCTCTCTCTGCGTTTTAAAAACCTTGTAGATATTGTCCTCTTTGAACTTCCTATTCTGAGCTTCCCCTCAAGGTTTTAAAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATATGGAATGCTTCGTTCCTCTCTCCAACCAATGTGGTATCTCACATATTAAGATAGATCGTTGTCCCAATTATGTGGTTGAAATTTTTGAACCGGTCAATCCACTCTGGATCATTCTGCAATTTCCAAGAGCTTGTTTGGATTGACCTTTTAAGGTTTTAATAAATGTTTTTAAGCAACAAAAATAGAAGTGTTTTCTTAAACACTTAGAAAGTTAATCCAAAAGACTCTGGTCATGAGGTTTGGGTTTTGGAACAACCATGGCTATAGAAACAAGCATTGAGATTAAGCTGAGGGTATGGGCACTAAGGATTATAAAAAAGGTTTAAAGGAAATCAAATTATTGGTTGGCTAAAATTGATGGCCTTCAACTTACTCACATTTTAGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACTCTAGATCCTTCCCAACAAAAGGGAATTGTCCCTGACAGTTATCTAAATGCCTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTGAACTCTGTTTCTCTAAAGTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCAAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGATGGAGGTTACAGTCAAAGGCAGGGTTGATGCTGTCCTAATTCAATGTGTATCAGTGTTGTTTTTCTAAGTTGTACAGTTCTTAATTTAGCTGTTTTGTTTCATGACAGTCCCAAATCTGTACTCTCTTTTGAATTTGTATTGTGGCTTGATGCGACATAAGGTTTGTATAACTTGTAGTTAACAGCAAATGGGTTTCAGGTTTAACCTTGTACATCCCTTCATGTTATTGTTTCCAAGCTTGTCGGAACCATTTTTCTCTATTCCTCTGAAACTCTTATCTCTCTCCATCAATATCACTGGTCTAAAC

mRNA sequence

TTTTATAATATGGCGCGCATCTCGTCAAGGGGAAAGAGAAATAGAACTCTTTTATTATCCTCATAGCTTTCTGTATTCCTAAATTCCTAAGGTCACACAAGACATGGCAGAGGCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCATCGAGCAGCGGTGGCGCGGACCCATGCTCGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCGACCTCCAACCCAGGTTCGACTCGACCCCCACCGAGTCCCCGGCCTGGTGGTCGCCCCAATTCGAGACCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACTCTAGATCCTTCCCAACAAAAGGGAATTGTCCCTGACAGTTATCTAAATGCCTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTGAACTCTGTTTCTCTAAAGTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCAAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGATGGAGGTTACAGTCAAAGGCAGGGTTGATGCTGTCCTAATTCAATGTGTATCAGTGTTGTTTTTCTAAGTTGTACAGTTCTTAATTTAGCTGTTTTGTTTCATGACAGTCCCAAATCTGTACTCTCTTTTGAATTTGTATTGTGGCTTGATGCGACATAAGGTTTGTATAACTTGTAGTTAACAGCAAATGGGTTTCAGGTTTAACCTTGTACATCCCTTCATGTTATTGTTTCCAAGCTTGTCGGAACCATTTTTCTCTATTCCTCTGAAACTCTTATCTCTCTCCATCAATATCACTGGTCTAAAC

Coding sequence (CDS)

ATGGCAGAGGCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCATCGAGCAGCGGTGGCGCGGACCCATGCTCGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCGACCTCCAACCCAGGTTCGACTCGACCCCCACCGAGTCCCCGGCCTGGTGGTCGCCCCAATTCGAGACCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACTCTAGATCCTTCCCAACAAAAGGGAATTGTCCCTGACAGTTATCTAAATGCCTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTGAACTCTGTTTCTCTAAAGTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCAAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGA

Protein sequence

MAEASWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTESPAWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI

Homology

[Close]

BLAST of CmaCh05G010300 vs. ExPASy Swiss-Prot
Match: Q9FDX1 (F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 2.8e-91
Identity = 171/298 (57.38%), Postives = 211/298 (70.81%), Query Frame = 0


Query: 4   ASWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTES 63
           + W  L  E L NI SRLTI++ W GPM V K WL    D  L+S FDL+P FDS P ES
Sbjct: 6   SDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP-ES 65

Query: 64  PAWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCAN 123
              WSP+FE K+D MLRS V WS G L+ IR+RHCSD +L   A  CPNL+VL+I+S  N
Sbjct: 66  THLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSSPN 125

Query: 124 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 183
           VTD SM KIA  C+ L+E+DISYCHEIS+ +L +IG++CPN++ LKRN  +    S+  G
Sbjct: 126 VTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDW--SSRHIG 185

Query: 184 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLDLFG 243
            VP  YL+ACPQD D+EA AI K M NLEHLE+ FS++S K L  IC+GCP L+YLDLFG
Sbjct: 186 SVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFG 245

Query: 244 CVNLTSRDIVNATSSLENL-EIRKPNFYIPRS--VFHTERYGHWRLYDERFQTDIFRI 299
           CV+L+SRDI +  S L+ L E++KP+ Y+PRS  V  TERYGHWRLYDERF     RI
Sbjct: 246 CVHLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of CmaCh05G010300 vs. ExPASy Swiss-Prot
Match: Q9M096 (Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.6e-73
Identity = 145/281 (51.60%), Postives = 189/281 (67.26%), Query Frame = 0


Query: 6   WAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTESPA 65
           W+ELT+ECL +IFSRL+ EQRW GPMLV K W+ A  D +L + FDL+ RF S P ES  
Sbjct: 20  WSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ESIN 79

Query: 66  WWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVT 125
           WW+P+FE K+DS LRS V  S G L+ IRIRHC++ SL   A+ CPNLEVL IK+C NVT
Sbjct: 80  WWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPNVT 139

Query: 126 DRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIV 185
           D SM KIA+ C  L+E+DISY + I++ SL  +G+ C N+K LKRN    L PS    + 
Sbjct: 140 DASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTIVA 199

Query: 186 PDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLDLFGCV 245
           P  YL   P+  + EA  I K+M  L+HLE+ +S ++A+ L  +CKGC NL+Y+DL GC+
Sbjct: 200 PLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCI 259

Query: 246 NLTSRDIVNATSSLENL-EIRKPNFYIPRSVFHTERYGHWR 286
           +LT  DI   TS L+NL EI KP+F  P +V    R G+ R
Sbjct: 260 SLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of CmaCh05G010300 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.5e-23
Identity = 79/244 (32.38%), Postives = 115/244 (47.13%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTESP 64
           +WAEL  +  ++I  RL   +  +    VCK W R   D S++   D+  R D       
Sbjct: 180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRA----- 239

Query: 65  AWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSL-QLVAQGCPNLEVLSIKSCAN 124
                 F+  ++SM R AV  S G L  I I +   + L   +A    NL+ L +  C  
Sbjct: 240 -----AFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFP 299

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           +TD  +AK       L+ +++SYC   S  SL  IG+ CPN+KTLK N            
Sbjct: 300 ITDEGVAKAVSKVPLLEYLEVSYC-LFSGESLRDIGRSCPNLKTLKLN------------ 359

Query: 185 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLDLFG 244
             P+   +      D  A AIA+ MP L HL+L  + ++ K L  I  GCP+L++LDL  
Sbjct: 360 RAPEIMFS--NSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQ 398

Query: 245 CVNL 248
           C N+
Sbjct: 420 CFNI 398

[Close]

BLAST of CmaCh05G010300 vs. ExPASy Swiss-Prot
Match: Q9S9V8 (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-22
Identity = 77/247 (31.17%), Postives = 116/247 (46.96%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTESP 64
           +WAEL  E  ++I  RL   +  +    VCK W R   D S++   D++ + +       
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVN---- 79

Query: 65  AWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSS-LQLVAQGCPNLEVLSIKSCAN 124
              S +    I+ +   AV  S G L  I I +  ++S L  +A    NL  L +  CA 
Sbjct: 80  ---SVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAP 139

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           V  R + + A+    L+E+DI+Y   I    L ++G+ CPN++TLK N            
Sbjct: 140 VLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLN------------ 199

Query: 185 IVPDSYLNACPQDV---DSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLD 244
                    C  DV   D  A+AIA+ MP L HL+L  + +S   L  I +GCP+LK L 
Sbjct: 200 ---------CTGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLG 238

Query: 245 LFGCVNL 248
           L  C+N+
Sbjct: 260 LHQCLNI 238

[Close]

BLAST of CmaCh05G010300 vs. ExPASy Swiss-Prot
Match: Q9M0U9 (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.8e-18
Identity = 75/245 (30.61%), Postives = 110/245 (44.90%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTESP 64
           +W EL  E  + I  RL   +       VC+ W R   D S++   D+    D       
Sbjct: 18  NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD------- 77

Query: 65  AWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSD-SSLQLVAQGCPNLEVLSIKSCAN 124
                  +  ++ M R AV  S G L  I I +      L  +A    NL  L +  C+ 
Sbjct: 78  ---LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQ 137

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           +TD    + A+    L+E+++SYC   S  SL ++G+ C N+KTLK              
Sbjct: 138 ITDDGFVE-AVVKLPLEELELSYC-SFSVESLRVVGQCCLNMKTLK-------------- 197

Query: 185 IVPDSYLNACPQ-DVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLDLF 244
                 LN  PQ + D +A+AIA+ MP L HL+LC + +S   L  I   C NL++LDL 
Sbjct: 198 ------LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLR 230

Query: 245 GCVNL 248
            C N+
Sbjct: 258 RCFNV 230

[Close]

BLAST of CmaCh05G010300 vs. TAIR 10
Match: AT5G57900.1 (SKP1 interacting partner 1 )

HSP 1 Score: 336.7 bits (862), Expect = 2.0e-92
Identity = 171/298 (57.38%), Postives = 211/298 (70.81%), Query Frame = 0


Query: 4   ASWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTES 63
           + W  L  E L NI SRLTI++ W GPM V K WL    D  L+S FDL+P FDS P ES
Sbjct: 6   SDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP-ES 65

Query: 64  PAWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCAN 123
              WSP+FE K+D MLRS V WS G L+ IR+RHCSD +L   A  CPNL+VL+I+S  N
Sbjct: 66  THLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSSPN 125

Query: 124 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 183
           VTD SM KIA  C+ L+E+DISYCHEIS+ +L +IG++CPN++ LKRN  +    S+  G
Sbjct: 126 VTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDW--SSRHIG 185

Query: 184 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLDLFG 243
            VP  YL+ACPQD D+EA AI K M NLEHLE+ FS++S K L  IC+GCP L+YLDLFG
Sbjct: 186 SVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFG 245

Query: 244 CVNLTSRDIVNATSSLENL-EIRKPNFYIPRS--VFHTERYGHWRLYDERFQTDIFRI 299
           CV+L+SRDI +  S L+ L E++KP+ Y+PRS  V  TERYGHWRLYDERF     RI
Sbjct: 246 CVHLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of CmaCh05G010300 vs. TAIR 10
Match: AT4G30640.1 (RNI-like superfamily protein )

HSP 1 Score: 275.4 bits (703), Expect = 5.4e-74
Identity = 145/281 (51.60%), Postives = 189/281 (67.26%), Query Frame = 0


Query: 6   WAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTESPA 65
           W+ELT+ECL +IFSRL+ EQRW GPMLV K W+ A  D +L + FDL+ RF S P ES  
Sbjct: 20  WSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ESIN 79

Query: 66  WWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVT 125
           WW+P+FE K+DS LRS V  S G L+ IRIRHC++ SL   A+ CPNLEVL IK+C NVT
Sbjct: 80  WWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPNVT 139

Query: 126 DRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIV 185
           D SM KIA+ C  L+E+DISY + I++ SL  +G+ C N+K LKRN    L PS    + 
Sbjct: 140 DASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTIVA 199

Query: 186 PDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLDLFGCV 245
           P  YL   P+  + EA  I K+M  L+HLE+ +S ++A+ L  +CKGC NL+Y+DL GC+
Sbjct: 200 PLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGCI 259

Query: 246 NLTSRDIVNATSSLENL-EIRKPNFYIPRSVFHTERYGHWR 286
           +LT  DI   TS L+NL EI KP+F  P +V    R G+ R
Sbjct: 260 SLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of CmaCh05G010300 vs. TAIR 10
Match: AT4G05497.1 (RNI-like superfamily protein )

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-23
Identity = 77/247 (31.17%), Postives = 116/247 (46.96%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTESP 64
           +WAEL  E  ++I  RL   +  +    VCK W R   D S++   D++ + +       
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVN---- 79

Query: 65  AWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSS-LQLVAQGCPNLEVLSIKSCAN 124
              S +    I+ +   AV  S G L  I I +  ++S L  +A    NL  L +  CA 
Sbjct: 80  ---SVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAP 139

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           V  R + + A+    L+E+DI+Y   I    L ++G+ CPN++TLK N            
Sbjct: 140 VLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLN------------ 199

Query: 185 IVPDSYLNACPQDV---DSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLD 244
                    C  DV   D  A+AIA+ MP L HL+L  + +S   L  I +GCP+LK L 
Sbjct: 200 ---------CTGDVKCCDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLG 238

Query: 245 LFGCVNL 248
           L  C+N+
Sbjct: 260 LHQCLNI 238

[Close]

BLAST of CmaCh05G010300 vs. TAIR 10
Match: AT4G05460.1 (RNI-like superfamily protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-19
Identity = 75/245 (30.61%), Postives = 110/245 (44.90%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTPTESP 64
           +W EL  E  + I  RL   +       VC+ W R   D S++   D+    D       
Sbjct: 18  NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGD------- 77

Query: 65  AWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSD-SSLQLVAQGCPNLEVLSIKSCAN 124
                  +  ++ M R AV  S G L  I I +      L  +A    NL  L +  C+ 
Sbjct: 78  ---LDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQ 137

Query: 125 VTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKG 184
           +TD    + A+    L+E+++SYC   S  SL ++G+ C N+KTLK              
Sbjct: 138 ITDDGFVE-AVVKLPLEELELSYC-SFSVESLRVVGQCCLNMKTLK-------------- 197

Query: 185 IVPDSYLNACPQ-DVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLDLF 244
                 LN  PQ + D +A+AIA+ MP L HL+LC + +S   L  I   C NL++LDL 
Sbjct: 198 ------LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLR 230

Query: 245 GCVNL 248
            C N+
Sbjct: 258 RCFNV 230

[Close]

BLAST of CmaCh05G010300 vs. TAIR 10
Match: AT4G15475.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-18
Identity = 54/183 (29.51%), Postives = 92/183 (50.27%), Query Frame = 0


Query: 87  LGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVTDRSMAKIALGCQKLQEVDISY 146
           L  L+L+  +   +S+LQ + +GC +LE+L +  C+ + D +M  IA GC+ L+++ I  
Sbjct: 374 LKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRR 433

Query: 147 CHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGI-----VPDSYLNACPQDVDSEA 206
           C+EI N  +  IGKHC ++  L   F + +       I     +    ++ C Q  D+  
Sbjct: 434 CYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCSLQQLNVSGCNQISDAGI 493

Query: 207 VAIAKFMPNLEHLEL-CFSKVSAKALTLICKGCPNLKYLDLFGCVNLTSRDIVNATSSLE 264
            AIA+  P L HL++     +    L  + +GCP LK L L  C ++T   + +     +
Sbjct: 494 TAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCK 553

The following BLAST results are available for this feature:

BLAST of CmaCh05G010300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FDX1	2.8e-91	57.38	F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1	[more]
Q9M096	7.6e-73	51.60	Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE...	[more]
Q9S9V9	5.5e-23	32.38	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
Q9S9V8	2.1e-22	31.17	Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana OX=3702 GN=FBL9 PE=4...	[more]
Q9M0U9	1.8e-18	30.61	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]

BLAST of CmaCh05G010300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57900.1	2.0e-92	57.38	SKP1 interacting partner 1	[more]
AT4G30640.1	5.4e-74	51.60	RNI-like superfamily protein	[more]
AT4G05497.1	1.5e-23	31.17	RNI-like superfamily protein	[more]
AT4G05460.1	1.3e-19	30.61	RNI-like superfamily protein	[more]
AT4G15475.1	1.1e-18	29.51	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 208..232 e-value: 110.0 score: 6.3 coord: 233..258 e-value: 0.017 score: 24.3 coord: 136..161 e-value: 0.014 score: 24.6 coord: 110..135 e-value: 2.1E-4 score: 30.6 coord: 87..109 e-value: 140.0 score: 5.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 76..269 e-value: 1.1E-33 score: 118.3
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 136..158 e-value: 0.36 score: 11.0
None	No IPR available	GENE3D	1.20.1280.50		coord: 5..46 e-value: 3.3E-8 score: 35.2
None	No IPR available	PANTHER	PTHR16134	F-BOX/TPR REPEAT PROTEIN POF3	coord: 6..298
None	No IPR available	PANTHER	PTHR16134:SF29	F-BOX PROTEIN SKIP1	coord: 6..298
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 81..262
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 6..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G010300.1	CmaCh05G010300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding