CmaCh05G010060 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G010060
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCopper transporter
LocationCma_Chr05: 8074750 .. 8075527 (+)
RNA-Seq ExpressionCmaCh05G010060
SyntenyCmaCh05G010060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTCTACTGGAGCAAGCAGGTGACGCTCCTGATCGATTCATGGCGGACAAATTCATGGCTAAGTTATTCCCTCTCCTTGCTTGCTTGCTTCATCGTTTCCGTTTTCTACCAGTATTTGGAGAGCTATCGCATCCGTTTGAAGCTTCTTTCATGTCGGAAACCGTCGCCATCGGAGATCGAGGTTCCTCTCCTTCGATCTAAAGTGGCTGGTAAGTGGACGGCTGTGAAATTTGCAGAATCTCTGTTTTTCGGAGTCAACTCGGCGATAGGTTACCTTCTGATGCTCGCGGTCATGTCCTTTAATGGTGGAGTTTTCGTTGCGATTGTGTTAGGGCTTGCGTTTGGTTATTTGGCGTTTAGGAGTGATGATGAGGATTTCAGTGTTAGCTTTGAAAATCCATGTGCCTGTGCTTAGTTCTTCCTCAGTATTGCGAATCAGATGAAAGCTGAATGAAAAGTAATTGCTGAATCTGCTCCTTTCAGATACGAATCGGTTTCTTGCATTGTCTTATTAGATCTGTTTCTTTTCATTTCTTGCTAAATTGATTGGCCGTTTACTTCAATTTCTGCAGATCTGTTTGGATGTTTTGTGGTTAGATAATTTGTGCATAAACGGGGTAAAATATTGTGATTCGTCTGTCAAATTGTGGAAAATTTCAATTAGGGGGAGAAACTCTACTGTTTGATTATGATCCTTTTTGTTCTTTTGTTTATCAATTTCGATTTGCAGTTTGACAGATAAGATGTCTGAAAATGACTCCATAAATCCTTAA

mRNA sequence

ATGACCTTCTACTGGAGCAAGCAGGTGACGCTCCTGATCGATTCATGGCGGACAAATTCATGGCTAAGTTATTCCCTCTCCTTGCTTGCTTGCTTCATCGTTTCCGTTTTCTACCAGTATTTGGAGAGCTATCGCATCCGTTTGAAGCTTCTTTCATGTCGGAAACCGTCGCCATCGGAGATCGAGGTTCCTCTCCTTCGATCTAAAGTGGCTGATAAGATGTCTGAAAATGACTCCATAAATCCTTAA

Coding sequence (CDS)

ATGACCTTCTACTGGAGCAAGCAGGTGACGCTCCTGATCGATTCATGGCGGACAAATTCATGGCTAAGTTATTCCCTCTCCTTGCTTGCTTGCTTCATCGTTTCCGTTTTCTACCAGTATTTGGAGAGCTATCGCATCCGTTTGAAGCTTCTTTCATGTCGGAAACCGTCGCCATCGGAGATCGAGGTTCCTCTCCTTCGATCTAAAGTGGCTGATAAGATGTCTGAAAATGACTCCATAAATCCTTAA

Protein sequence

MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSPSEIEVPLLRSKVADKMSENDSINP
Homology
BLAST of CmaCh05G010060 vs. ExPASy Swiss-Prot
Match: Q69P80 (Copper transporter 5.1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT5.1 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.4e-13
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPS 58
          MTFYW K VT+L D WRT +W  Y LSL+A  + S FYQYLE++RIR+KLL+  KP+
Sbjct: 4  MTFYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRVKLLAGAKPA 60

BLAST of CmaCh05G010060 vs. ExPASy Swiss-Prot
Match: Q93VM8 (Copper transporter 5 OS=Arabidopsis thaliana OX=3702 GN=COPT5 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-12
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSP-- 60
          MTFYW  + T+L D W+T+SWLSY L+L+ACF+ S FYQYLE+ RI+ K LS  + +P  
Sbjct: 4  MTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRRIQFKSLSSSRRAPPP 63

Query: 61 ----SEIEVPLL 67
              S +  PL+
Sbjct: 64 PRSSSGVSAPLI 75

BLAST of CmaCh05G010060 vs. ExPASy Swiss-Prot
Match: Q6Z0Q9 (Putative copper transporter 5.2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT5.2 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.2e-08
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLK 50
          M+FYW   VT+L D WRT+ W  Y  SLLA F+ +  YQ+LE+ R+RL+
Sbjct: 4  MSFYWGTSVTILFDGWRTSGWPGYLASLLALFLAAALYQHLEARRVRLR 52

BLAST of CmaCh05G010060 vs. TAIR 10
Match: AT5G20650.1 (copper transporter 5 )

HSP 1 Score: 73.6 bits (179), Expect = 8.5e-14
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 1  MTFYWSKQVTLLIDSWRTNSWLSYSLSLLACFIVSVFYQYLESYRIRLKLLSCRKPSP-- 60
          MTFYW  + T+L D W+T+SWLSY L+L+ACF+ S FYQYLE+ RI+ K LS  + +P  
Sbjct: 4  MTFYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRRIQFKSLSSSRRAPPP 63

Query: 61 ----SEIEVPLL 67
              S +  PL+
Sbjct: 64 PRSSSGVSAPLI 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q69P805.4e-1359.65Copper transporter 5.1 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT5.1 PE=2 ... [more]
Q93VM81.2e-1250.00Copper transporter 5 OS=Arabidopsis thaliana OX=3702 GN=COPT5 PE=1 SV=1[more]
Q6Z0Q95.2e-0851.02Putative copper transporter 5.2 OS=Oryza sativa subsp. japonica OX=39947 GN=COPT... [more]
Match NameE-valueIdentityDescription
AT5G20650.18.5e-1450.00copper transporter 5 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007274Ctr copper transporterPFAMPF04145Ctrcoord: 1..50
e-value: 1.1E-10
score: 42.3
IPR007274Ctr copper transporterPANTHERPTHR12483SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERScoord: 1..72
NoneNo IPR availablePANTHERPTHR12483:SF92COPPER TRANSPORTER 5.1-LIKEcoord: 1..72
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..31
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G010060.1CmaCh05G010060.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006878 cellular copper ion homeostasis
biological_process GO:0035434 copper ion transmembrane transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005375 copper ion transmembrane transporter activity