CmaCh05G009940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G009940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	NADH-ubiquinone oxidoreductase chain 5
Location	Cma_Chr05: 7982032 .. 7984555 (-)
RNA-Seq Expression	CmaCh05G009940
Synteny	CmaCh05G009940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAACGTAATGGGCGAAGCGGATGAAAAGAGTATCACAAACAAATAAGAACCCAAATCAAAAGGTCCATTACATTTTGATTCATCACAGTCCAAATTTGAGGAACGGAATTTAATGGAATTTGGGGGAAGAACAAGAAAAGAAGAGGAAGAAGGCCAGAGAGGGAGAGGGGTTGGTTGTAGTAAGAGAAGGTCCACGCAGCGCAACCTGAACCTGAACCACTGCGAATTCAACGCTCATGCTCTCTCTCAATTCCATTTCTCAATTCCTCGTTCCATTCATCTGTGGCTGTGTTAAATTCCCCATTTTTCATCGTCGCCCTTCAGAGAAACCAACCTCTCGGGGCGCAGCCATGATTACTCGATCGAATCTGGTGGAGCAGTTGAGAGAATACCAGATTCGATCCAAGCACGACTGGGCTTCCGCCTCCTTCTTCTCCTCTACCTCTAATATTACATCCTCCAGGTATCTCCCATTCATTTCCTAGTTCCTTATTTTACCAACGTTCCTCGTTGTTACATGTTGATTCTTTAGATTCTCAATCTTGTGTGTTCGTTTTGTTTCCTTTTTATTGTTTGTGATCGATGAACGTGGCTTTTGTGTTCTTTATACTCTCAATTACAGGATTCGGATCATTGTAGATTTTCACAGACGGTGTCTCAAATTTGTTTTATTTCGTATGAGATGATTCAATTTGTTTTCTTTTTTTGGTCAATGAACTTTGGCATTTGGCAAGATCGTATTACAATTATTGATTGCTTTTGTTCTGGGCAGTAATGTTCAATAATCACTGGGTTGGTTACAAAAGGAAAATAATGGTGATCGTGTGGAATTTGGTACTTGAAACGGGATTTTTGTAAATAAATGTCATGATGCATCATGTCATTCTGTGAGTCTCTTTAGCCGTAGCCTGGGAAATTTCTTGTACTTACAAGTTTAGCATCAAATCCTAAGATTATGAGTTTCAGTTGATACAGTTCTGTTTGTTCATATCTCGCCTTGTTCGCTAATTGCATTGCACTCGAGGAAATTATGTTCGAAATTGTACCAAAGTTAATGTTTTAGCATCCAATTACGCATCTCTGGTGAGTGAAGTTCTAAGTTCCAAATCACACAATCTTGAGAATACGTTTTTCATGTTTATAATTGTTAATTTTTCTAGTGTCAATTTGGAGAAGAACTCTTGTATGTTCCTAGCACGATGTTTGTTCAATGTTATTTGTTTGTTTTAGGTTCTAAAGAATGTACGATAGTTAACAGAAACTATAGATGCCTTCTTAGCTTGGAACTAGTTCATTATTGATCAAGAGCTTTCACTTAAACCAATTGACACATTTTTTTGTCTTATGTACAACATATCCAAATAGATATCCGTAGGCTTGACTCGGTGCTACTGTCCACAACACATTCTTTATCGTGTTCGGTTTATGTATTCGATTTGTTCTCCTGATAGATCTTATGTACAACATATCCAAATAGATATCCGTAGGCTTGACACGGTGCTACTGTTCATAACACATTCTTTATCGTTCGGTATATGTATTCGATTTTCTCTCCTGATAGATCTTATGTACAACATCTTCAAATAGATATCTGTAGGCTTGACACGGTGCTACTGTTCATAATACATTCTGTACCATTTGGTATATGTATTCGATTTGCTCTCCTGATAGATCTTATGTACGACATATCCAAATAGATATCTGTAGGCTTGACACGGTGCTCATTCATTATCGTTCGGTTTATGTATTTGATTTGCTCTCCTGATAGATCTTATGTACAACACATCCAAATAGATATCCATAGGCTTGACACGGGGCTACTGTCCATAACACATTCGTTACCGTTCGGTTTATGTACTTGATTTGCTCTCCTGTAGATCTTATGTACAACACATTCAAATAGATATCCGTAGGCTTGACACGGTGCTTGTCCATAACACATTCTTCGTTCGGCTTTTGTATTCGATTTGTTCTCCCGATAGATCTTATGTACGACATATCCACATAGATATATGTAGGCTTGACATGGTGCTACTGTCCATAACACATTCTTTATCGTTCGGTTTATGTATTCTATTGGATCTCCTGATAGATCTTATGTACAACATATCCAAATAGATATTGGTAGGCTTGACTCGGTGCTACTGTCCATAACACATTCTTTATCGTTCGGTTTATGTATTCAATTAGCTCTCCTGATAGCATGAAGATATCCAATATGATATCACTTCTGATGTACATTTTGATTGTTGTATTCTTGATGCAGGGTGGATGTAGTCATTTTTGTAATATGGGAACTCATAATTCTATCCTTCTTGGTGTTTTCGGCGGTTTCTTTATATTTTCGACATATGCAGTTGACGTTCGTTTTAATATGCATCACGATGTTGTTGATTGTATGCATGAAAGTAACAAAGCAAATGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATGTGAAAAAAAACTGATAGTAGAAGGAGAGATATACTGAACTATTTTTTTTTTT

mRNA sequence

CGAACGTAATGGGCGAAGCGGATGAAAAGAGTATCACAAACAAATAAGAACCCAAATCAAAAGGTCCATTACATTTTGATTCATCACAGTCCAAATTTGAGGAACGGAATTTAATGGAATTTGGGGGAAGAACAAGAAAAGAAGAGGAAGAAGGCCAGAGAGGGAGAGGGGTTGGTTGTAGTAAGAGAAGGTCCACGCAGCGCAACCTGAACCTGAACCACTGCGAATTCAACGCTCATGCTCTCTCTCAATTCCATTTCTCAATTCCTCGTTCCATTCATCTGTGGCTGTGTTAAATTCCCCATTTTTCATCGTCGCCCTTCAGAGAAACCAACCTCTCGGGGCGCAGCCATGATTACTCGATCGAATCTGGTGGAGCAGTTGAGAGAATACCAGATTCGATCCAAGCACGACTGGGCTTCCGCCTCCTTCTTCTCCTCTACCTCTAATATTACATCCTCCAGGGTGGATGTAGTCATTTTTGTAATATGGGAACTCATAATTCTATCCTTCTTGGTGTTTTCGGCGGTTTCTTTATATTTTCGACATATGCAGTTGACGTTCGTTTTAATATGCATCACGATGTTGTTGATTGTATGCATGAAAGTAACAAAGCAAATGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATGTGAAAAAAAACTGATAGTAGAAGGAGAGATATACTGAACTATTTTTTTTTTT

Coding sequence (CDS)

ATGCTCTCTCTCAATTCCATTTCTCAATTCCTCGTTCCATTCATCTGTGGCTGTGTTAAATTCCCCATTTTTCATCGTCGCCCTTCAGAGAAACCAACCTCTCGGGGCGCAGCCATGATTACTCGATCGAATCTGGTGGAGCAGTTGAGAGAATACCAGATTCGATCCAAGCACGACTGGGCTTCCGCCTCCTTCTTCTCCTCTACCTCTAATATTACATCCTCCAGGGTGGATGTAGTCATTTTTGTAATATGGGAACTCATAATTCTATCCTTCTTGGTGTTTTCGGCGGTTTCTTTATATTTTCGACATATGCAGTTGACGTTCGTTTTAATATGCATCACGATGTTGTTGATTGTATGCATGAAAGTAACAAAGCAAATGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATGTGA

Protein sequence

MLSLNSISQFLVPFICGCVKFPIFHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAVSLYFRHMQLTFVLICITMLLIVCMKVTKQMRLARKKKRRMLLPLSM

Homology

[Close]

BLAST of CmaCh05G009940 vs. TAIR 10
Match: AT1G20460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 167.9 bits (424), Expect = 5.8e-42
Identity = 87/106 (82.08%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 39  MITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAV 98
           MITRSNL EQLREYQIRSKHDWAS SFFSSTSN +SSRVDVV+FVIWEL+IL+F VFSAV
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVILAFFVFSAV 60

Query: 99  SLYFRHMQLTFVLICITMLLIVCMKVTKQMRLARKKKRRMLLPLSM 145
           SLYF+ +QL F+L+C+T+LL++CMKVTKQ+RLARKKKRRMLLPLSM
Sbjct: 61  SLYFKRLQLAFILVCVTLLLLICMKVTKQVRLARKKKRRMLLPLSM 106

[Close]

BLAST of CmaCh05G009940 vs. TAIR 10
Match: AT1G76185.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20460.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 161.8 bits (408), Expect = 4.2e-40
Identity = 84/106 (79.25%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 39  MITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDVVIFVIWELIILSFLVFSAV 98
           MITRSNL EQLREYQIRSKHDWAS SFFSSTSN +SSRVDVV+FVIWEL++L+ +VFSAV
Sbjct: 1   MITRSNLAEQLREYQIRSKHDWASVSFFSSTSNFSSSRVDVVVFVIWELVMLALVVFSAV 60

Query: 99  SLYFRHMQLTFVLICITMLLIVCMKVTKQMRLARKKKRRMLLPLSM 145
           SLYFR +QL F+L+C+T+LL++CMK+TKQ+R ARKKKRRMLLPLSM
Sbjct: 61  SLYFRRLQLAFILLCVTLLLLLCMKITKQVRHARKKKRRMLLPLSM 106

The following BLAST results are available for this feature:

BLAST of CmaCh05G009940 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G009940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20460.1	5.8e-42	82.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G76185.1	4.2e-40	79.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34936	EXPRESSED PROTEIN	coord: 39..144
None	No IPR available	PANTHER	PTHR34936:SF7	PROTEIN, PUTATIVE-RELATED	coord: 39..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G009940.1	CmaCh05G009940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane