CmaCh05G009830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G009830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein DELETION OF SUV3 SUPPRESSOR 1(I)-like
Location	Cma_Chr05: 7908350 .. 7909686 (+)
RNA-Seq Expression	CmaCh05G009830
Synteny	CmaCh05G009830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTGAAATGAAAGCAGCTACTGAGGAAGTGAAAGTTGACCTCTTTGAGGATGATGATGAGTTTGAAGAGTTTGAGATTAATGAAGGTATGACTTGTAATTTTTTGGTTTCAATTTGCAGTCATTTTTTATTTATCAGTGCTTGTTGTGCAATTTATCCTTTGTTTCAGCCATTATAACGTGAATGTTATGCAACGGTCTGGATAAGCCTGTTACTGATTCAATCCTTACTGCTAGCATTCTTCATTTGGATGCCCTATTGTTGTTGTCCTGTTCACTCATTATTTCCTAGTAAATTCTTGGTATCCAGTGTTTGAAAAAAATGAGCCAGAATGCTTGTAAACTCAATTGCAATGGTAACAATCAATGAAAACAAGTGTTGATTAGGATAAAGAAGAGTTGGAATAATGCATGGATCTTAAAAGAGATGCCCCGTAAGTATACTATATTGGATGGGACTTTTTCTCTTTAAGAATTAAGATATTAAAGTCATTTAGATGTTTGTTTTAAGTTAATATAATCACTTATAAAAAAAAGCGAGGCTTTTCTTTATTTTTCAGAAGTGGGTTACTCTTACTACTTGATTGTTAGGAAGAGGATAAAGAATCTTAAGTCTAACATTCAAATCATATGGTTTCTTGACGATTTTGTTGACTGCGACTATGTTTTGAAAGCCATGCATATCCTTTAAAGTCTTGTATATTCTTTAAAAAGAAAAATGTTAGAGTGATAAGAATGTTTTGCAGTAGTTTAAATGGATAAGTAATGTGGGATCTCACACTTAACTAGTCTCATAGGTCGACTACTTGACTCTAAGGTTATGACGTGTCTGCCAAAACAACTCATGAGATTTTGTTCTAAGCAGGTAACGACCATGAGGTTTTGAACACATTCACCTTGGTCTTTTTACTTTTTCACATGTACTAATAAGGCAATTCATGGTGGTTCTTGTTTGCTCATATAGAAGTTGGAACTTCGTAATATATATCACATATGCCATAGTCCTAGTCCTAGCAAGATATTGCTACCTAGCAGAGAATTCAGAGATCTCTTCTTCCATTTCAAAGTTCTTTTGCAACTTCATCTTCTTCAGATTCGGGTGTAAAACTTATTAATATGCTTCTTGTTCTTGACGTAACATCTTTAAGCCGTCTAATACTTTTATAACCTTTCCTTCTGTTCTCATGGGCAAAAATCAATTACAGAATGGGAAGTCAAGGAAGGTAAAGAAATTACTCAGCAGTGGGAAGACGACTGGGATGATGATGATGTCAATGATGACTTCTCGTTGCAGCTTAAGAGAGAATTGGAGAGCAATGTGGAGAAAAAATGA

mRNA sequence

ATGGCAACTGAAATGAAAGCAGCTACTGAGGAAGTGAAAGTTGACCTCTTTGAGGATGATGATGAGTTTGAAGAGTTTGAGATTAATGAAGAATGGGAAGTCAAGGAAGGTAAAGAAATTACTCAGCAGTGGGAAGACGACTGGGATGATGATGATGTCAATGATGACTTCTCGTTGCAGCTTAAGAGAGAATTGGAGAGCAATGTGGAGAAAAAATGA

Coding sequence (CDS)

ATGGCAACTGAAATGAAAGCAGCTACTGAGGAAGTGAAAGTTGACCTCTTTGAGGATGATGATGAGTTTGAAGAGTTTGAGATTAATGAAGAATGGGAAGTCAAGGAAGGTAAAGAAATTACTCAGCAGTGGGAAGACGACTGGGATGATGATGATGTCAATGATGACTTCTCGTTGCAGCTTAAGAGAGAATTGGAGAGCAATGTGGAGAAAAAATGA

Protein sequence

MATEMKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELESNVEKK

Homology

[Close]

BLAST of CmaCh05G009830 vs. ExPASy Swiss-Prot
Match: Q9XIR8 (Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana OX=3702 GN=DSS1(I) PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-20
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MATEMKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFS 60
          MA E KAAT E VK+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLKRELESNVEKK 73
           QL++ELE+  +KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of CmaCh05G009830 vs. ExPASy Swiss-Prot
Match: Q9FL96 (Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana OX=3702 GN=DSS1(V) PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-20
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MATEMKAATEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E KAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELESNVEKK 73
          QLK+ELE+  EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of CmaCh05G009830 vs. ExPASy Swiss-Prot
Match: Q3ZBR6 (26S proteasome complex subunit SEM1 OS=Bos taurus OX=9913 GN=SEM1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.3e-06
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 5  MKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRE 64
          M    + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ E
Sbjct: 1  MSEKKQPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAE 60

Query: 65 LESN 69
          LE +
Sbjct: 61 LEKH 63

[Close]

BLAST of CmaCh05G009830 vs. ExPASy Swiss-Prot
Match: P60896 (26S proteasome complex subunit SEM1 OS=Homo sapiens OX=9606 GN=SEM1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.3e-06
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 5  MKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRE 64
          M    + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ E
Sbjct: 1  MSEKKQPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAE 60

Query: 65 LESN 69
          LE +
Sbjct: 61 LEKH 63

[Close]

BLAST of CmaCh05G009830 vs. ExPASy Swiss-Prot
Match: P60897 (26S proteasome complex subunit SEM1 OS=Mus musculus OX=10090 GN=Sem1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.3e-06
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 5  MKAATEEVKVDLFEDDDEFEEFEINEEWEVKEGKEITQQWEDDWDDDDVNDDFSLQLKRE 64
          M    + V + L E+DDEFEEF   E+W   +  E    WED+WDDD+V DDFS QL+ E
Sbjct: 1  MSEKKQPVDLGLLEEDDEFEEFPA-EDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAE 60

Query: 65 LESN 69
          LE +
Sbjct: 61 LEKH 63

[Close]

BLAST of CmaCh05G009830 vs. TAIR 10
Match: AT1G64750.1 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 99.8 bits (247), Expect = 9.8e-22
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MATEMKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFS 60
          MA E KAAT E VK+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLKRELESNVEKK 73
           QL++ELE+  +KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of CmaCh05G009830 vs. TAIR 10
Match: AT1G64750.2 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 99.8 bits (247), Expect = 9.8e-22
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MATEMKAATEE-VKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFS 60
          MA E KAAT E VK+DLFEDDDEFEEFEINE+W E +E KE++QQWEDDWDDDDVNDDFS
Sbjct: 1  MAAEPKAATAEVVKMDLFEDDDEFEEFEINEDWLEKEEVKEVSQQWEDDWDDDDVNDDFS 60

Query: 61 LQLKRELESNVEKK 73
           QL++ELE+  +KK
Sbjct: 61 RQLRKELENGTDKK 74

[Close]

BLAST of CmaCh05G009830 vs. TAIR 10
Match: AT5G45010.1 (DSS1 homolog on chromosome V )

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-21
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MATEMKAATEEVKVDLFEDDDEFEEFEINEEW-EVKEGKEITQQWEDDWDDDDVNDDFSL 60
          MA E KAA E VKVDLFEDDDEFEEFEINE+W E +E KE++ QWEDDWDDDDV+DDFS 
Sbjct: 1  MAAEPKAAVEVVKVDLFEDDDEFEEFEINEDWLEKEEVKEVSLQWEDDWDDDDVSDDFSR 60

Query: 61 QLKRELESNVEKK 73
          QLK+ELE+  EKK
Sbjct: 61 QLKKELENASEKK 73

[Close]

BLAST of CmaCh05G009830 vs. TAIR 10
Match: AT1G64750.3 (deletion of SUV3 suppressor 1(I) )

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-15
Identity = 55/115 (47.83%), Postives = 64/115 (55.65%), Query Frame = 0


Query: 1   MATEMKAATEE-VKVDLFEDDDEFEEFEINE----------------------------- 60
           MA E KAAT E VK+DLFEDDDEFEEFEINE                             
Sbjct: 1   MAAEPKAATAEVVKMDLFEDDDEFEEFEINEVDSSDLTSSCIERIDKDGLVYELSRSDMK 60

Query: 61  ------------EW-EVKEGKEITQQWEDDWDDDDVNDDFSLQLKRELESNVEKK 73
                       +W E +E KE++QQWEDDWDDDDVNDDFS QL++ELE+  +KK
Sbjct: 61  TNLFDVNFRCEIDWLEKEEVKEVSQQWEDDWDDDDVNDDFSRQLRKELENGTDKK 115

The following BLAST results are available for this feature:

BLAST of CmaCh05G009830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIR8	1.4e-20	74.32	Protein DELETION OF SUV3 SUPPRESSOR 1(I) OS=Arabidopsis thaliana OX=3702 GN=DSS1...	[more]
Q9FL96	1.8e-20	75.34	Protein DSS1 HOMOLOG ON CHROMOSOME V OS=Arabidopsis thaliana OX=3702 GN=DSS1(V) ...	[more]
Q3ZBR6	4.3e-06	48.44	26S proteasome complex subunit SEM1 OS=Bos taurus OX=9913 GN=SEM1 PE=3 SV=1	[more]
P60896	4.3e-06	48.44	26S proteasome complex subunit SEM1 OS=Homo sapiens OX=9606 GN=SEM1 PE=1 SV=1	[more]
P60897	4.3e-06	48.44	26S proteasome complex subunit SEM1 OS=Mus musculus OX=10090 GN=Sem1 PE=3 SV=1	[more]

BLAST of CmaCh05G009830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64750.1	9.8e-22	74.32	deletion of SUV3 suppressor 1(I)	[more]
AT1G64750.2	9.8e-22	74.32	deletion of SUV3 suppressor 1(I)	[more]
AT5G45010.1	1.3e-21	75.34	DSS1 homolog on chromosome V	[more]
AT1G64750.3	1.0e-15	47.83	deletion of SUV3 suppressor 1(I)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..72
None	No IPR available	PANTHER	PTHR16771:SF8	OS01G0316800 PROTEIN	coord: 1..72
IPR007834	DSS1/SEM1	SMART	SM01385	DSS1_SEM1_2	coord: 9..67 e-value: 2.4E-20 score: 83.6
IPR007834	DSS1/SEM1	PFAM	PF05160	DSS1_SEM1	coord: 10..66 e-value: 5.6E-17 score: 61.6
IPR007834	DSS1/SEM1	PANTHER	PTHR16771	26 PROTEASOME COMPLEX SUBUNIT DSS1	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G009830.1	CmaCh05G009830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0008541	proteasome regulatory particle, lid subcomplex