CmaCh05G009360 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G009360
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cma_Chr05: 7558936 .. 7559793 (-)
RNA-Seq Expression	CmaCh05G009360
Synteny	CmaCh05G009360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAGAATCCAATTTTTCCACTGTTGCACCACCAATCTTCGATGGAGACAATTATCAAATGTGGGCAGTTTGTATGGAGACTTATTTGGAGGCCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCAAGCAAATCCTACTGTAGCACAAATCAAATTACAGAAGGAAAAGAAGACAAGGAAATCAAAGGCGAAAGCTTGCCTATTTGCTGCTGTATCTCAAATGATCTTCATGCGAATAATGTCCCTCAAAACAGCAAAGGAAATCTGGGATTATCTCAAAGCCGAATATGAAGGAGATGAGAGGATTCGTGGAATGAAAGTCTTGAATTTAATTAGGGATTTTGAGTTGCAGAAGATGAAGGAGTCTGAATCGGTGAAAGAGTACTCTGACAGACTTCTCAGCATTGCCAATAAGGTGAGATTACTTGGTTCTGTATTAAATGATTCCAGGATCGTTGAAAAGCTTCTAGTCACTGTTCCAGAGAAGTTTGAAGCCACCATTACTACTTTGGAGAACCCCAAAGACTTGTCAAAGATTTCTCTTACAGAGCTCTTGAATGCTTTACCAACACAAGAGCAAAGGAGGTCTATGAGGCAAGAAAGGGTGATTGAAGATGCCTTACCTGTTAAGCATCAAGACAGCCGCAGGTATAAAAACAAGAAAATTTTCAAAAACCAATCGACGTATGAAAATCCATCTGCAAATTATCAGAAGACAAAAGGAGGAGGTTTCAAAAATACCTATCCACCTTGCCGCCATTGTGAGAAGAAAGGTCATCCACCATACAAGTGCTGGAGAAGACCTGACGCCTTCAACTTGGACATGAAGCTGTGA

mRNA sequence

ATGGAAGGAGAATCCAATTTTTCCACTGTTGCACCACCAATCTTCGATGGAGACAATTATCAAATGTGGGCAGTTTGTATGGAGACTTATTTGGAGGCCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCAAGCAAATCCTACTGTAGCACAAATCAAATTACAGAAGGAAAAGAAGACAAGGAAATCAAAGGCGAAAGCTTGCCTATTTGCTGCTGTATCTCAAATGATCTTCATGCGAATAATGTCCCTCAAAACAGCAAAGGAAATCTGGGATTATCTCAAAGCCGAATATGAAGGAGATGAGAGGATTCGTGGAATGAAAGTCTTGAATTTAATTAGGGATTTTGAGTTGCAGAAGATGAAGGAGTCTGAATCGGTGAAAGAGTACTCTGACAGACTTCTCAGCATTGCCAATAAGGTGAGATTACTTGGTTCTGTATTAAATGATTCCAGGATCGTTGAAAAGCTTCTAGTCACTGTTCCAGAGAAGTTTGAAGCCACCATTACTACTTTGGAGAACCCCAAAGACTTGTCAAAGATTTCTCTTACAGAGCTCTTGAATGCTTTACCAACACAAGAGCAAAGGAGGTCTATGAGGCAAGAAAGGGTGATTGAAGATGCCTTACCTGTTAAGCATCAAGACAGCCGCAGGTATAAAAACAAGAAAATTTTCAAAAACCAATCGACGTATGAAAATCCATCTGCAAATTATCAGAAGACAAAAGGAGGAGGTTTCAAAAATACCTATCCACCTTGCCGCCATTGTGAGAAGAAAGGTCATCCACCATACAAGTGCTGGAGAAGACCTGACGCCTTCAACTTGGACATGAAGCTGTGA

Coding sequence (CDS)

ATGGAAGGAGAATCCAATTTTTCCACTGTTGCACCACCAATCTTCGATGGAGACAATTATCAAATGTGGGCAGTTTGTATGGAGACTTATTTGGAGGCCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCAAGCAAATCCTACTGTAGCACAAATCAAATTACAGAAGGAAAAGAAGACAAGGAAATCAAAGGCGAAAGCTTGCCTATTTGCTGCTGTATCTCAAATGATCTTCATGCGAATAATGTCCCTCAAAACAGCAAAGGAAATCTGGGATTATCTCAAAGCCGAATATGAAGGAGATGAGAGGATTCGTGGAATGAAAGTCTTGAATTTAATTAGGGATTTTGAGTTGCAGAAGATGAAGGAGTCTGAATCGGTGAAAGAGTACTCTGACAGACTTCTCAGCATTGCCAATAAGGTGAGATTACTTGGTTCTGTATTAAATGATTCCAGGATCGTTGAAAAGCTTCTAGTCACTGTTCCAGAGAAGTTTGAAGCCACCATTACTACTTTGGAGAACCCCAAAGACTTGTCAAAGATTTCTCTTACAGAGCTCTTGAATGCTTTACCAACACAAGAGCAAAGGAGGTCTATGAGGCAAGAAAGGGTGATTGAAGATGCCTTACCTGTTAAGCATCAAGACAGCCGCAGGTATAAAAACAAGAAAATTTTCAAAAACCAATCGACGTATGAAAATCCATCTGCAAATTATCAGAAGACAAAAGGAGGAGGTTTCAAAAATACCTATCCACCTTGCCGCCATTGTGAGAAGAAAGGTCATCCACCATACAAGTGCTGGAGAAGACCTGACGCCTTCAACTTGGACATGAAGCTGTGA

Protein sequence

MEGESNFSTVAPPIFDGDNYQMWAVCMETYLEALDLWEAIEEDYEVPPLQANPTVAQIKLQKEKKTRKSKAKACLFAAVSQMIFMRIMSLKTAKEIWDYLKAEYEGDERIRGMKVLNLIRDFELQKMKESESVKEYSDRLLSIANKVRLLGSVLNDSRIVEKLLVTVPEKFEATITTLENPKDLSKISLTELLNALPTQEQRRSMRQERVIEDALPVKHQDSRRYKNKKIFKNQSTYENPSANYQKTKGGGFKNTYPPCRHCEKKGHPPYKCWRRPDAFNLDMKL

Homology

[Close]

BLAST of CmaCh05G009360 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 53.1 bits (126), Expect = 4.1e-07
Identity = 41/187 (21.93%), Postives = 87/187 (46.52%), Query Frame = 0


Query: 14  IFDGDNYQMWAVCMETYLEALDLWEAI-----EEDYEVPPLQANPTVAQIKLQKEKKTRK 73
           + D  +Y++WA   ++ L    LW+ +     ++  + P L A     ++   ++   + 
Sbjct: 11  VSDQFDYEIWAPITKSTLIEQGLWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKD 70

Query: 74  SKAKACLFAAVSQMIFMRIMSLKTAKEIWDYLKA--EYEGDERIRGMKVLNLIRDFELQK 133
           +KA   L ++++  +F + +S  +AK++WD L+   E     R+  + +  L +  E  K
Sbjct: 71  AKALQILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLK 130

Query: 134 MKESESVKEYSDRLLSIANKVRLLGSVLNDSRIVEKLLVTVPEKFEATITTLENPKDLSK 193
           M + ES   Y D+ L I  ++       +D  I + +  T+   F+   + LE   D+ K
Sbjct: 131 MVDKESGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHK 190

[Close]

BLAST of CmaCh05G009360 vs. TAIR 10
Match: AT3G20980.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-05
Identity = 28/106 (26.42%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 6   NFSTVAPPIFDGDNYQMWAVCMETYLEALDLWEAIEEDYEVPP-LQANPTVA------QI 65
           N  T+   + D  NY++WA  M+T L    LW+ ++  Y +PP L   P +A       +
Sbjct: 5   NLPTLQDVVSDELNYEIWAPIMKTSLAEKGLWDIVK--YGIPPDLSKIPELATKIRTQDL 64

Query: 66  KLQKEKKTRKSKAKACLFAAVSQMIFMRIMSLKTAKEIWDYLKAEY 105
            + ++   + +KA   L + +   +F + +   +AK +WD +K +Y
Sbjct: 65  SIYRDSAVKDTKALHLLQSFLPDSVFRKTLETTSAKHLWDLVKEDY 108

The following BLAST results are available for this feature:

BLAST of CmaCh05G009360 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G009360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21000.1	4.1e-07	21.93	Gag-Pol-related retrotransposon family protein	[more]
AT3G20980.1	1.7e-05	26.42	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 65..205 e-value: 1.1E-28 score: 99.8
None	No IPR available	PANTHER	PTHR35317:SF13	ZINC FINGER, CCHC-TYPE-RELATED	coord: 2..276
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 2..276
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 15..41 e-value: 1.2E-11 score: 44.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G009360.1	CmaCh05G009360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding