CmaCh05G009250 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G009250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNase H domain-containing protein
Location	Cma_Chr05: 7441457 .. 7446715 (+)
RNA-Seq Expression	CmaCh05G009250
Synteny	CmaCh05G009250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACATTGATTTGATTTGGAAACCCTGAAATCCCCATAGTTCCTGGAAAATTCCCCTCTGATGAACTGCTGCTCCCAATTCTCTACCTACGCTCGCGCCATTTTCAGAACCACCAATCTTGCTTTTGCAGCTTCCACCTCCATTCATGGCTGCGGCTTTAATCCCTACTGGACCTCAAGCCTTCACAGCGTCACTCTTAAACCTACTCCTTTAGACTCCTTGTGTTCCAGGTTTCGTCTACGTTGCTACTCCTCTCGGAAACTCCGCAAGGGCGCTTCTCCTTCTCCCAACTTAGATTCTGAACCTCCCATGGAACCAGACATGGGCGACTTCTTTGTCGTTCGGAAGGGGGATGTTGTTGGAGTCTATAGAAGTTTTACGGACTGTCAGGCGCAAATTGGATCTTCGGTATTCGTTTCTTTAACTTATGAGTGGTGATTTTTGCCAAGATTGTTGTTGTTAATGTGTTTTTTGTTCTTGAGCTACTGGCTTACTTGATTGATTCGTTTTTTGCGTGTACCTTTCACTCTTTATGAACTAGAACACGTTTTGAATTCATGTTCTCTCTGCGAACTTACATTAGGTTTTCCTACTGGCTATAATTGTTTTTGAAGCATTGGCTCCGTGATCGATCAGTTCAGCTTACTTTTTATTGCTTAAGGATTTTGTCTTACTTGACAAGCATAGTTCTTTGTTAATTTTACTTATGGTTGCCGGTTTGTTGTAACTGGTGCATTTCGTTCAGTGGATTAAGCTCGGGTGTTATCGTTTCTTTTCTGTGGCAGATATGCGATCTTCCTGTTAGCGTGTATAAGGGACACTCATTGCCGAAAGACACCAAGGAGTATCTTGCTTCCGTCGGGCTTAAGAATGCCCTGTACACTATTCAAGCTGCAGATATGAGACCTGATCTTTTCAGTTCGCTCGTTCCTTGCACTTTTCATGTATGATGCTTCATTAGTTGAATGATTATCGAGTTAAAAGTTTAAGAGAACATTACTGTCATGAATTATATAAGAAAAAAGTAGGAAACATATAATAATTCTGCTCTGATACTAGACTTATTCAAGCATCACAATGATTAATATTTCCCAAATGTTAGATCATCCATGTTTGGTCATTATTGAAGTGGGTGAATTTGGCCCTATCATGGGATGCTCTACAGATGTTTGCGAGAAAGGAGCATATTGTTTTAGTCGCCCTAGGTCACAATTTTGAGTTTGTACTCCATGCCTCCCTTGCCTTGTAACTTTCTCTTTGTAGAGAACACGGTTTCATGTTTTGTAGGTAGAATAGTATAACAAGCACAGTTTGCACTTTAAAGTCAGATGATGAAGGCTGTAAACTACAACAACATGAAGCATTTTATACATATTGGTTTTTTACAATAGAAAATTAGGATGTTAGGTTTTCAATTTTGTTTTTATGTAGATTCAATCTCCTTGCTGGACTAGATGCACTCCAGCATAAGTTTGTTATATTTATAAAATGTTTCTGTTTTCCAGGATGAAGCTACTTCTCTTAAAGGTGAGGCTTCTGGCCAGGATGCCATAAAGAAAAGATCAAGAGAGACCATTGTATCAAAAAATATTGTAAGTTGATTTTCATGTCATCTTCTAAGCTAAAATTTTAATTGAAGCAATAAAGCTCTTTACAAAGGAACTTGCAACACTGAATTTTATAAGCAACTTATGGTTTTTGTTGTCAATGCTTGTTTACTTGGGTTAATGCAGATTTAAATGTTTGCAGGGGTCAACTGTTTTAACTCCTACTTCAAAAGATCCCTTGAGGAAACATGTCAAGTTGGAAGATTCCGTTGTGTCCCGAGCACCCTCTAACCATGTAAGTCAAAGTCTCAGTGATGTCATAGTGATTGGACCAATACTATGAATTGCATACTCTTGTCTGTAGCTAAATATTTGTGTACATGTGATTCTGTATTTTTTGCCTAGTGTTGCTTAAGTGGTTGATTAAAAAAAGAAGTAAATTACTGCATTTGTTTGTTGTCCTCTGAGTTGTATCAATTTTTATTTTAGTCTATTAATTAGGACGTAAAGTTCTGTTTCTAAACTAATTATGTATTTGATTGTATCCTTGTGTTGTTGTAACATCATTCAAAAGGTGCCAGCTCATTAAACCTTCAGAATTTTCACATCTGTCAACTGATATCAAGTCATCAATTTCGTTATGATCATAATAAGGTTGGTACAGGGTAGTTCTTATACAAAGATATAATTAGGGTCTGAAATATTACTTTTAATTTAAAAGGGCCAAAACGAAACCAGCAAATGGTTGTGGTTTCCTGATGGTAATCATATTTTATACTGAACTAGCGTGGATGCAAACTAGTGGAGTCACTTTTTAGTTTTGTTTTGACGCTGATATGCTTTCATTTCATTGTCCAGATTCCGAAATGATATTTCCATAATACAATGGAATAGTCCCTTAGTTTATTTTTCAACTTCCTCGACAAATTTTGATAGCCATTATAATATTTCATGTACAGGAATCTTGCTTTCTAGAATTCGATGGTGCCTCAAAGGGAAACCCTGGGCAAGCTGGTGCAGGAGCTGTTCTACGAGCTCATGATGGGAGTGTGGTATACATTCTTCCGTTTAGATCCCACATTACTTATGTATTCTTATTTATATATACCTAATCTATCTCTCCCCCCCTTGGAATAGATATGTAGACTGCGTGAAGGCCTAGGTATAGCAACCAATAATGTTGCTGAATATCGAGCAATTCTTTTAGGGTTGAAGTATGCACTTGAGAAAGGGTTTACTAGGATCCATGTCCAAGGTGACTCCAAACTTGTCTGTATGCAGGTTGGTTAAAATATTTTTCCCTCACAAGTATTGTTGTGTTTTTGTATTTATGTATTTATGTTTATGTTTATGTTTTTTTTAATTTATTTGTCAACTTAATTCTTGTTGTGGCCTCACATTGTAAGCTTGTTAAGTAGGTCTCATTTTGTCTTTTATATTTAGGAAAAATTCGGAGGCATGGTTTTAATGATTGTCTTAGGACTAAGAAGTTCAAAGCTGAAAACTTTGTATTTAAAGATAATCCTTGTAAATTATTATTACACTGTAAGAAACATTTGTACTGAAGGGAAATAATTAGGCCAAACTGCATGAAACTAATGTTGTCAAACCCGATTCCGGGAACATCCCAATAGTTTTCCTGGCCCATGGTTTGCAGTCTCTGTGAAAATACTATTTCATCGAGAGTTGTACTTCTATTTTCTTCAAAGGGAAGGAGGCTAACGTCCTTATGTCGATATGCCTGCTCTGTGAAGATTCCCTTGACACTACTTTCACCCTAACCCAAGGGGGCAGGAACGTTAGAAGAAAACACACCAATTGACAAATTGAAAAAGAAGTTGTAGAACATTTGTTTAAGGCACTCTGATTCCTGAAACTTTTTCTTGCTATCGATTGCCCCTTTTATCAACACATGGGATGAAGTTTTAATGCAGTGGAACAATTGTCTGGTTAACAACATTGACGAAAAACCTTTCCTCTATTGAGATGTTAACAGACCTAACCTTCAAGTTGAAAAGTATATCATCATCAATGTAGCTCACTTCCATATGAGTTCTTTTGAATATCTAGCATTGCTTTTTGTGGCTCAGCAATGTGGAGGTTCATTAATAGAAAGTTGTAGGAAAGATCCAGAATTTGAACCAAACACAGTTCTTATATGGAGTTAGAAATTTACTAATTACTATGCATAGCAATTAAAGAATTAAAATGTATCTGGCCACGTCTTTGGTTAGTTGCATTTTCAAGTTCGCATCCCCAGTTTCTCTCGCTAATAGTATGGTTTTGCTGAAATACAGTGTTTTATGTAAATATTTAATATTAGGGACATTTAAAGCTGCAACTGTTTTGTTATTGTCAACCTCCGTATATCAAAAGCAACCTTATCTCTTAGTCCTACCTCTCTGTCTGGATCTATCTGTTTTTTTGTAAAAAATAAAATTCATGGCATCTTCGTTTGTTCCCCTTTTTCTTATGTATTCTAAATCAAGCATACTTCATTGAACAGGTTCAAGGATTATGGAAGGTAAAAAATGAGAATATCTCTGAGTTATGTAATGAAGTTATGAAGCTGAAGGATAAATTTCTCTCATTCGAGATCAGTCATGTACTAAGGGTCAGTACCATTAATTCCTTTCTATTTGCATCTCACGATGTTGTGTAGTTGGTTTCTGCATATTATTGTTTCTTATGCTCTACGCTCTTTACTATTTAAGATCTGAAGGTGGTGAAAAAAAAATATCCTTAAGGGTCAGTACCCTACAAACATAGGCTTAAACTGTAGCCTTATTTTAGTTCAGTTTTTCAATAGAACAGTGAACGTATGTCAAGTTTGAGTTTGCACGTTGCTTTCTCCACATTATTAGTCCGACAACCGAACGAGACTTGCATACTCGAAAAAATAATAAATATGTACTCATAAAACAGTCTGGTACTTATTCCTTATCAAGGTAATGTCCTTAATGGAACTGGATACCAATTCTAGCGACCATTGAATCCATTTTCTTATTTGTTGATATCTGTACTTGTTCATTCTTTGAAATTCTGACATTCTGTCGTTCATTCTGGAAAGAATCTAAACTCTGAAGCCGATGCTCAAGCAAACTTGGCTATCTCTCTACCTGGTAATGCTTATTTGAAATAATAATAATAACTACTTTGAGTTTTCCTTAAAGAGTAACCAAGGTGGTCCTTCCTATTGCAGACGGCGAAGCCCAAGAGTTTGAAGAATAATAGTTAGAATGCACGGCAGGATACATCTTACAGCATAGAATTATTTTCTGAGGAATGCATTTATAGTCCAATGCTTTGTATGCTACTATTCTTTTCTCAAGGTGTCGACACGATCTTTGGGCGTTGTTTCGGTTGCTCGCCTATGCTCCATGGCCCTGACTTAGCGAACTGAAGTTCTAGTGGCAATGGACTGGACAGCGCAGAAGAGCATTTGTCCTGCATATATGAGATAAGAGTCCTAATTCAATTTATCACCGAAATGTTGCATTTATTTTCTTATTCATGTTACCAGTTGATTAGGCAATGATGCAGACTATAGTCGAGAATTAAAGAACACAGAAATTTTGATTGTTAAATGAGATCTTTGAGAAGGACGTTTTTTTTCTGCTTCAGCCATCGAGGATTGTCAAACTTTGTAGCTTTTTCTCTTGTTTAAGTCTTGATTAGATCTTCTATTCCTTTAGTTTGGCTACTGG

mRNA sequence

ATGGATGACATTGATTTGATTTGGAAACCCTGAAATCCCCATAGTTCCTGGAAAATTCCCCTCTGATGAACTGCTGCTCCCAATTCTCTACCTACGCTCGCGCCATTTTCAGAACCACCAATCTTGCTTTTGCAGCTTCCACCTCCATTCATGGCTGCGGCTTTAATCCCTACTGGACCTCAAGCCTTCACAGCGTCACTCTTAAACCTACTCCTTTAGACTCCTTGTGTTCCAGGTTTCGTCTACGTTGCTACTCCTCTCGGAAACTCCGCAAGGGCGCTTCTCCTTCTCCCAACTTAGATTCTGAACCTCCCATGGAACCAGACATGGGCGACTTCTTTGTCGTTCGGAAGGGGGATGTTGTTGGAGTCTATAGAAGTTTTACGGACTGTCAGGCGCAAATTGGATCTTCGATATGCGATCTTCCTGTTAGCGTGTATAAGGGACACTCATTGCCGAAAGACACCAAGGAGTATCTTGCTTCCGTCGGGCTTAAGAATGCCCTGTACACTATTCAAGCTGCAGATATGAGACCTGATCTTTTCAGTTCGCTCGTTCCTTGCACTTTTCATGATGAAGCTACTTCTCTTAAAGGTGAGGCTTCTGGCCAGGATGCCATAAAGAAAAGATCAAGAGAGACCATTGTATCAAAAAATATTGGGTCAACTGTTTTAACTCCTACTTCAAAAGATCCCTTGAGGAAACATGTCAAGTTGGAAGATTCCGTTGTGTCCCGAGCACCCTCTAACCATGAATCTTGCTTTCTAGAATTCGATGGTGCCTCAAAGGGAAACCCTGGGCAAGCTGGTGCAGGAGCTGTTCTACGAGCTCATGATGGGAGTGTGATATGTAGACTGCGTGAAGGCCTAGGTATAGCAACCAATAATGTTGCTGAATATCGAGCAATTCTTTTAGGGTTGAAGTATGCACTTGAGAAAGGGTTTACTAGGATCCATGTCCAAGGTGACTCCAAACTTGTCTGTATGCAGGTTCAAGGATTATGGAAGGTAAAAAATGAGAATATCTCTGAGTTATGTAATGAAGTTATGAAGCTGAAGGATAAATTTCTCTCATTCGAGATCAGTCATGTACTAAGGAATCTAAACTCTGAAGCCGATGCTCAAGCAAACTTGGCTATCTCTCTACCTGACGGCGAAGCCCAAGAGTTTGAAGAATAATAGTTAGAATGCACGGCAGGATACATCTTACAGCATAGAATTATTTTCTGAGGAATGCATTTATAGTCCAATGCTTTGTATGCTACTATTCTTTTCTCAAGGTGTCGACACGATCTTTGGGCGTTGTTTCGGTTGCTCGCCTATGCTCCATGGCCCTGACTTAGCGAACTGAAGTTCTAGTGGCAATGGACTGGACAGCGCAGAAGAGCATTTGTCCTGCATATATGAGATAAGAGTCCTAATTCAATTTATCACCGAAATGTTGCATTTATTTTCTTATTCATGTTACCAGTTGATTAGGCAATGATGCAGACTATAGTCGAGAATTAAAGAACACAGAAATTTTGATTGTTAAATGAGATCTTTGAGAAGGACGTTTTTTTTCTGCTTCAGCCATCGAGGATTGTCAAACTTTGTAGCTTTTTCTCTTGTTTAAGTCTTGATTAGATCTTCTATTCCTTTAGTTTGGCTACTGG

Coding sequence (CDS)

ATGAACTGCTGCTCCCAATTCTCTACCTACGCTCGCGCCATTTTCAGAACCACCAATCTTGCTTTTGCAGCTTCCACCTCCATTCATGGCTGCGGCTTTAATCCCTACTGGACCTCAAGCCTTCACAGCGTCACTCTTAAACCTACTCCTTTAGACTCCTTGTGTTCCAGGTTTCGTCTACGTTGCTACTCCTCTCGGAAACTCCGCAAGGGCGCTTCTCCTTCTCCCAACTTAGATTCTGAACCTCCCATGGAACCAGACATGGGCGACTTCTTTGTCGTTCGGAAGGGGGATGTTGTTGGAGTCTATAGAAGTTTTACGGACTGTCAGGCGCAAATTGGATCTTCGATATGCGATCTTCCTGTTAGCGTGTATAAGGGACACTCATTGCCGAAAGACACCAAGGAGTATCTTGCTTCCGTCGGGCTTAAGAATGCCCTGTACACTATTCAAGCTGCAGATATGAGACCTGATCTTTTCAGTTCGCTCGTTCCTTGCACTTTTCATGATGAAGCTACTTCTCTTAAAGGTGAGGCTTCTGGCCAGGATGCCATAAAGAAAAGATCAAGAGAGACCATTGTATCAAAAAATATTGGGTCAACTGTTTTAACTCCTACTTCAAAAGATCCCTTGAGGAAACATGTCAAGTTGGAAGATTCCGTTGTGTCCCGAGCACCCTCTAACCATGAATCTTGCTTTCTAGAATTCGATGGTGCCTCAAAGGGAAACCCTGGGCAAGCTGGTGCAGGAGCTGTTCTACGAGCTCATGATGGGAGTGTGATATGTAGACTGCGTGAAGGCCTAGGTATAGCAACCAATAATGTTGCTGAATATCGAGCAATTCTTTTAGGGTTGAAGTATGCACTTGAGAAAGGGTTTACTAGGATCCATGTCCAAGGTGACTCCAAACTTGTCTGTATGCAGGTTCAAGGATTATGGAAGGTAAAAAATGAGAATATCTCTGAGTTATGTAATGAAGTTATGAAGCTGAAGGATAAATTTCTCTCATTCGAGATCAGTCATGTACTAAGGAATCTAAACTCTGAAGCCGATGCTCAAGCAAACTTGGCTATCTCTCTACCTGACGGCGAAGCCCAAGAGTTTGAAGAATAA

Protein sequence

MNCCSQFSTYARAIFRTTNLAFAASTSIHGCGFNPYWTSSLHSVTLKPTPLDSLCSRFRLRCYSSRKLRKGASPSPNLDSEPPMEPDMGDFFVVRKGDVVGVYRSFTDCQAQIGSSICDLPVSVYKGHSLPKDTKEYLASVGLKNALYTIQAADMRPDLFSSLVPCTFHDEATSLKGEASGQDAIKKRSRETIVSKNIGSTVLTPTSKDPLRKHVKLEDSVVSRAPSNHESCFLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRIHVQGDSKLVCMQVQGLWKVKNENISELCNEVMKLKDKFLSFEISHVLRNLNSEADAQANLAISLPDGEAQEFEE

Homology

[Close]

BLAST of CmaCh05G009250 vs. ExPASy Swiss-Prot
Match: P9WLH5 (Bifunctional protein Rv2228c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv2228c PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.6e-17
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 0


Query: 234 LEFDGASKGNPGQAGAGAVLRAHDGS-VICRLREGLGIATNNVAEYRAILLGLKYALEKG 293
           +E DG S+GNPG AG GAV+   D S V+   ++ +G ATNNVAEYR ++ GL  A++ G
Sbjct: 5   IEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLG 64

Query: 294 FTRIHVQGDSKLVCMQVQGLWKVKNENISELCNEVMKLKDKFLSFEISHVLRNLNSEADA 353
            T   V  DSKLV  Q+ G WKVK+ ++ +L  +   L  +F       V R  N+ AD 
Sbjct: 65  ATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADR 124

Query: 354 QANLAI 359
            AN A+
Sbjct: 125 LANDAM 130

[Close]

BLAST of CmaCh05G009250 vs. ExPASy Swiss-Prot
Match: P9WLH4 (Uncharacterized protein MT2287 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT2287 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.6e-17
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 0


Query: 234 LEFDGASKGNPGQAGAGAVLRAHDGS-VICRLREGLGIATNNVAEYRAILLGLKYALEKG 293
           +E DG S+GNPG AG GAV+   D S V+   ++ +G ATNNVAEYR ++ GL  A++ G
Sbjct: 5   IEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLG 64

Query: 294 FTRIHVQGDSKLVCMQVQGLWKVKNENISELCNEVMKLKDKFLSFEISHVLRNLNSEADA 353
            T   V  DSKLV  Q+ G WKVK+ ++ +L  +   L  +F       V R  N+ AD 
Sbjct: 65  ATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADR 124

Query: 354 QANLAI 359
            AN A+
Sbjct: 125 LANDAM 130

[Close]

BLAST of CmaCh05G009250 vs. ExPASy Swiss-Prot
Match: P64956 (Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2253C PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.6e-17
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 0


Query: 234 LEFDGASKGNPGQAGAGAVLRAHDGS-VICRLREGLGIATNNVAEYRAILLGLKYALEKG 293
           +E DG S+GNPG AG GAV+   D S V+   ++ +G ATNNVAEYR ++ GL  A++ G
Sbjct: 5   IEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLG 64

Query: 294 FTRIHVQGDSKLVCMQVQGLWKVKNENISELCNEVMKLKDKFLSFEISHVLRNLNSEADA 353
            T   V  DSKLV  Q+ G WKVK+ ++ +L  +   L  +F       V R  N+ AD 
Sbjct: 65  ATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADR 124

Query: 354 QANLAI 359
            AN A+
Sbjct: 125 LANDAM 130

[Close]

BLAST of CmaCh05G009250 vs. ExPASy Swiss-Prot
Match: Q9HSF6 (Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) OX=64091 GN=rnhA PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.5e-17
Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 0


Query: 236 FDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTR 295
           FDGAS+GNPG A  G VL + DG ++    + +G ATNN AEY A++  L+ A + GF  
Sbjct: 74  FDGASRGNPGPAAVGWVLVSGDGGIVAEGGDTIGRATNNQAEYDALIAALEAAADFGFDD 133

Query: 296 IHVQGDSKLVCMQVQGLWKVKNENISELCNEVMKLKDKFLSFEISHVLRNLNSEADAQAN 355
           I ++GDS+LV  Q+ G W   + ++        +L   F  + I+HV R  N  ADA AN
Sbjct: 134 IELRGDSQLVEKQLTGAWDTNDPDLRRKRVRARELLTGFDDWSITHVPRATNERADALAN 193

Query: 356 LAI 359
            A+
Sbjct: 194 EAL 196

[Close]

BLAST of CmaCh05G009250 vs. ExPASy Swiss-Prot
Match: P54162 (14.7 kDa ribonuclease H-like protein OS=Bacillus subtilis (strain 168) OX=224308 GN=rnhA PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-07
Identity = 41/124 (33.06%), Postives = 62/124 (50.00%), Query Frame = 0


Query: 237 DGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRI 296
           DGAS GNPG +G G  ++ H+G         +G+ TN  AE+ A++ G+K    +G+  +
Sbjct: 8   DGASAGNPGPSGIGIFIK-HEGKAE-SFSIPIGVHTNQEAEFLALIEGMKLCATRGYQSV 67

Query: 297 HVQGDSKLVCMQVQGLWKVKNENISELCNEVMKLKDKFLSFEISHVLRNLNSEADAQANL 356
             + DS +V  +   L  VKN        E+++LK  F  F I  +    N +AD  A  
Sbjct: 68  SFRTDSDIV-ERATELEMVKNITFQPFVEEIIRLKAAFPLFFIKWIPGKQNQKADLLAKE 127

Query: 357 AISL 361
           AI L
Sbjct: 128 AIRL 128

[Close]

BLAST of CmaCh05G009250 vs. TAIR 10
Match: AT1G24090.1 (RNase H family protein )

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-86
Identity = 181/371 (48.79%), Postives = 243/371 (65.50%), Query Frame = 0


Query: 1   MNCCSQFSTYARAIFRTTNLAFAASTSIHGCGFNPYWTSSLHSVTLKPTPLDSLCSRFRL 60
           MNC S   +Y  A+      ++ +S   + C F  Y  S      LKP  + S+     +
Sbjct: 1   MNCLSHARSYI-ALGLLKRSSYVSSIPWNECFF--YMPS---KSCLKPVAVSSVFGICSV 60

Query: 61  RCYSSR-KLRKGASPSPNLDSEPPMEPDMGDFFVVRKGDVVGVYRSFTDCQAQIGSSICD 120
             YSSR K  K    S  + S    E D   FFVVRKGDV+G+Y+  +DCQAQ+GSS+ D
Sbjct: 61  HSYSSRSKAVKSKMLSSTVVSAVDKEKDA--FFVVRKGDVIGIYKDLSDCQAQVGSSVFD 120

Query: 121 LPVSVYKGHSLPKDTKEYLASVGLKNALYTIQAADMRPDLFSSLVPCTFHDEATSL---- 180
           LPVSVYKG+SLPKDT+EYL+SVGLK  LY+++A+D++ D+F +L PC F + A       
Sbjct: 121 LPVSVYKGYSLPKDTEEYLSSVGLKKPLYSLRASDLKDDMFGALTPCLFQEPAPCTVKVS 180

Query: 181 KGEASGQDAIKKRSRETIVSKNIGSTVLTPTSKDPLRKHVKLEDSVVSRAPSNHESCFLE 240
           + E + +   K   ++ + S +I        S DPL K  K+E S    A  + E+CF+E
Sbjct: 181 EDETTSETKSKDDKKDQLPSASI--------SYDPLEKLSKVEPS----AYISDETCFIE 240

Query: 241 FDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTR 300
           FDGASKGNPG +GA AVL+  DGS+ICR+R+GLGIATNN AEY A++LGLKYA+EKG+  
Sbjct: 241 FDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKYAIEKGYKN 300

Query: 301 IHVQGDSKLVCMQVQGLWKVKNENISELCNEVMKLKDKFLSFEISHVLRNLNSEADAQAN 360
           I V+GDSKLVCMQ++G WKV +E +++L  E   L +K +SFEISHVLRNLN++AD QAN
Sbjct: 301 IKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLNADADEQAN 351

Query: 361 LAISLPDGEAQ 367
           LA+ LP+GE +
Sbjct: 361 LAVRLPEGEVE 351

[Close]

BLAST of CmaCh05G009250 vs. TAIR 10
Match: AT5G51080.1 (RNase H family protein )

HSP 1 Score: 285.0 bits (728), Expect = 8.4e-77
Identity = 156/334 (46.71%), Postives = 214/334 (64.07%), Query Frame = 0


Query: 33  FNPYWTSSLHSVTLKPTPLDSLCSRFRLRCYSSRKLRKGASPSPNLDSEPPMEPDMGDFF 92
           +N  + +SL S +LKP  +    S   + CYSSR     +  S +  S    + +   FF
Sbjct: 28  WNQCFYTSLKS-SLKPASV----SVSSVHCYSSRSKTAKSKMSKSSVSVSDSDKEKDAFF 87

Query: 93  VVRKGDVVGVYRSFTDCQAQIGSSICDLPVSVYKGHSLPKDTKEYLASVGLKNALYTIQA 152
           VVRKGD+VG+Y+   DCQAQ+GSS+ D PVSVYKG+SL KDT+E L++VGLK  LY  +A
Sbjct: 88  VVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKPLYVFRA 147

Query: 153 ADMRPDLFSSLVPCTFHDEATSLKGEASGQDAIKKRSRETIVSKNIGSTVLTPTSKDPLR 212
            D++ D+F +L PC F D+                                 P++   + 
Sbjct: 148 LDLKEDMFGALTPCLFQDQ--------------------------------LPSASMSVE 207

Query: 213 KHVKLEDSVVSRAPSNHESCFLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIAT 272
           K  +LE S    A +++E+C +EFDGASKGNPG +GA AVL+  DGS+I ++R+GLGIAT
Sbjct: 208 KLAELEPS----ADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIAT 267

Query: 273 NNVAEYRAILLGLKYALEKGFTRIHVQGDSKLVCMQVQGLWKVKNENISELCNEVMKLKD 332
           NN AEY  ++LGLK+A+EKG+T+I V+ DSKLVCMQ++G WKV +E +S+L  E  +L D
Sbjct: 268 NNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSD 320

Query: 333 KFLSFEISHVLRNLNSEADAQANLAISLPDGEAQ 367
           K LSFEISHVLR+LNS+AD QAN+A  L +GE +
Sbjct: 328 KCLSFEISHVLRSLNSDADEQANMAARLSEGEVE 320

[Close]

BLAST of CmaCh05G009250 vs. TAIR 10
Match: AT5G51080.2 (RNase H family protein )

HSP 1 Score: 285.0 bits (728), Expect = 8.4e-77
Identity = 156/334 (46.71%), Postives = 214/334 (64.07%), Query Frame = 0


Query: 33  FNPYWTSSLHSVTLKPTPLDSLCSRFRLRCYSSRKLRKGASPSPNLDSEPPMEPDMGDFF 92
           +N  + +SL S +LKP  +    S   + CYSSR     +  S +  S    + +   FF
Sbjct: 28  WNQCFYTSLKS-SLKPASV----SVSSVHCYSSRSKTAKSKMSKSSVSVSDSDKEKDAFF 87

Query: 93  VVRKGDVVGVYRSFTDCQAQIGSSICDLPVSVYKGHSLPKDTKEYLASVGLKNALYTIQA 152
           VVRKGD+VG+Y+   DCQAQ+GSS+ D PVSVYKG+SL KDT+E L++VGLK  LY  +A
Sbjct: 88  VVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKPLYVFRA 147

Query: 153 ADMRPDLFSSLVPCTFHDEATSLKGEASGQDAIKKRSRETIVSKNIGSTVLTPTSKDPLR 212
            D++ D+F +L PC F D+                                 P++   + 
Sbjct: 148 LDLKEDMFGALTPCLFQDQ--------------------------------LPSASMSVE 207

Query: 213 KHVKLEDSVVSRAPSNHESCFLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGIAT 272
           K  +LE S    A +++E+C +EFDGASKGNPG +GA AVL+  DGS+I ++R+GLGIAT
Sbjct: 208 KLAELEPS----ADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIAT 267

Query: 273 NNVAEYRAILLGLKYALEKGFTRIHVQGDSKLVCMQVQGLWKVKNENISELCNEVMKLKD 332
           NN AEY  ++LGLK+A+EKG+T+I V+ DSKLVCMQ++G WKV +E +S+L  E  +L D
Sbjct: 268 NNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSD 320

Query: 333 KFLSFEISHVLRNLNSEADAQANLAISLPDGEAQ 367
           K LSFEISHVLR+LNS+AD QAN+A  L +GE +
Sbjct: 328 KCLSFEISHVLRSLNSDADEQANMAARLSEGEVE 320

[Close]

BLAST of CmaCh05G009250 vs. TAIR 10
Match: AT5G51080.3 (RNase H family protein )

HSP 1 Score: 276.9 bits (707), Expect = 2.3e-74
Identity = 141/276 (51.09%), Postives = 189/276 (68.48%), Query Frame = 0


Query: 91  FFVVRKGDVVGVYRSFTDCQAQIGSSICDLPVSVYKGHSLPKDTKEYLASVGLKNALYTI 150
           FFVVRKGD+VG+Y+   DCQAQ+GSS+ D PVSVYKG+SL KDT+E L++VGLK  LY  
Sbjct: 18  FFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKPLYVF 77

Query: 151 QAADMRPDLFSSLVPCTFHDEATSLKGEASGQDAIKKRSRETIVSKNIGSTVLTPTSKDP 210
           +A D++ D+F +L PC F D+                                 P++   
Sbjct: 78  RALDLKEDMFGALTPCLFQDQ--------------------------------LPSASMS 137

Query: 211 LRKHVKLEDSVVSRAPSNHESCFLEFDGASKGNPGQAGAGAVLRAHDGSVICRLREGLGI 270
           + K  +LE S    A +++E+C +EFDGASKGNPG +GA AVL+  DGS+I ++R+GLGI
Sbjct: 138 VEKLAELEPS----ADTSYETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGI 197

Query: 271 ATNNVAEYRAILLGLKYALEKGFTRIHVQGDSKLVCMQVQGLWKVKNENISELCNEVMKL 330
           ATNN AEY  ++LGLK+A+EKG+T+I V+ DSKLVCMQ++G WKV +E +S+L  E  +L
Sbjct: 198 ATNNAAEYHGLILGLKHAIEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQL 257

Query: 331 KDKFLSFEISHVLRNLNSEADAQANLAISLPDGEAQ 367
            DK LSFEISHVLR+LNS+AD QAN+A  L +GE +
Sbjct: 258 SDKCLSFEISHVLRSLNSDADEQANMAARLSEGEVE 257

[Close]

BLAST of CmaCh05G009250 vs. TAIR 10
Match: AT3G01410.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 276.6 bits (706), Expect = 3.0e-74
Identity = 141/292 (48.29%), Postives = 198/292 (67.81%), Query Frame = 0


Query: 84  MEPDMGDFFVVRKGDVVGVYRSFTDCQAQIGSSICDLPVSVYKGHSLPKDTKEYLASVGL 143
           ME +   F++VRKGD++GVYRS ++CQ Q GSS+    +SVYKG+  PK  ++ L+S G+
Sbjct: 5   MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64

Query: 144 KNALYTIQAADMRPDLFSSLVPCTFHDEATSLKGEASGQDAIKKRSRETIVSKNIGSTVL 203
           KNAL+++ A+ ++ D F  L+PC     ++S +GE+  + +  KR ++      +GS   
Sbjct: 65  KNALFSVNASHVKDDAFGKLIPCPVQQPSSS-QGESLNKSSPSKRLQD------MGSGES 124

Query: 204 TPTSKDPLRKHVKLEDSVVSRAPSN---------HESCFLEFDGASKGNPGQAGAGAVLR 263
              S  P +K +K+E+ ++ R PS+         ++SC +EFDGASKGNPG+AGAGAVLR
Sbjct: 125 GSFSPSPPQKQLKIENDMLRRIPSSLLTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLR 184

Query: 264 AHDGSVICRLREGLGIATNNVAEYRAILLGLKYALEKGFTRIHVQGDSKLVCMQVQGLWK 323
           A D SV+  LREG+G ATNNVAEYRA+LLGL+ AL+KGF  +HV GDS LVCMQVQG WK
Sbjct: 185 ASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWK 244

Query: 324 VKNENISELCNEVMKLKDKFLSFEISHVLRNLNSEADAQANLAISLPDGEAQ 367
             +  ++ELC +  +L + F +F+I H+ R  NSEAD QAN AI L DG+ Q
Sbjct: 245 TNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQANSAIFLADGQTQ 289

The following BLAST results are available for this feature:

BLAST of CmaCh05G009250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P9WLH5	5.6e-17	42.86	Bifunctional protein Rv2228c OS=Mycobacterium tuberculosis (strain ATCC 25618 / ...	[more]
P9WLH4	5.6e-17	42.86	Uncharacterized protein MT2287 OS=Mycobacterium tuberculosis (strain CDC 1551 / ...	[more]
P64956	5.6e-17	42.86	Uncharacterized protein Mb2253c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF...	[more]
Q9HSF6	9.5e-17	40.65	Ribonuclease HI OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC...	[more]
P54162	1.1e-07	33.06	14.7 kDa ribonuclease H-like protein OS=Bacillus subtilis (strain 168) OX=224308...	[more]

BLAST of CmaCh05G009250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24090.1	1.2e-86	48.79	RNase H family protein	[more]
AT5G51080.1	8.4e-77	46.71	RNase H family protein	[more]
AT5G51080.2	8.4e-77	46.71	RNase H family protein	[more]
AT5G51080.3	2.3e-74	51.09	RNase H family protein	[more]
AT3G01410.1	3.0e-74	48.29	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 232..361 e-value: 2.9E-37 score: 129.7
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 236..357 e-value: 7.4E-30 score: 103.3
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 228..359 score: 16.422771
IPR011320	Ribonuclease H1, N-terminal	PFAM	PF01693	Cauli_VI	coord: 91..113 e-value: 5.5E-4 score: 20.1
None	No IPR available	PANTHER	PTHR46387	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 101..366
None	No IPR available	PANTHER	PTHR46387:SF14	PUTATIVE-RELATED	coord: 101..366
None	No IPR available	CDD	cd09279	RNase_HI_like	coord: 232..359 e-value: 8.52044E-53 score: 169.19
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 231..355

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G009250.1	CmaCh05G009250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity