CmaCh05G008040 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G008040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	late embryogenesis abundant protein 7
Location	Cma_Chr05: 5120679 .. 5121510 (+)
RNA-Seq Expression	CmaCh05G008040
Synteny	CmaCh05G008040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATTAAAAAATTAAAAAAATTAAAAAATGGGAAGCTCCACCCTCTTCAAAAGCCTTCCAAAGTTTGGTCATTTTGGGGCAGCAGTCATTGCATGGAGATCACCCACTTCCAACACTTCCCTCCGTTTCGCTTCCAACCCCAAATTTATTCATGTAAGTAATTTGTTCGTACATTGAATCATTGGTAAGGTTCTTACTTCTTTTTGATGTTCGACAACAAGTCAGAGCTTCGAATCTCATATATATTTTTGTGTGTTTTTTTGACAGACAAATCCACCACAAGATGGGTCAGAAGCCAAAGATGCCATAAACCCAGAGGCAAATGAAGGAATGACATCGGGTGAACAAATGATGCAGGACAAGGCTTACTCTACTGCAGAACACGTAATCAAAACTCCCCCAACTTTTTATTTTATTTTTTAAACCAACTGAATCGAAGCTACGAATGAGAGCGATGTTGATGTTGAAGATAGATAAGTAAGGTAAATTTGAGAATGCAGGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTAAGTGCAAGAGCGCAAGAGGTATCGGCAAAGGCAAAGCAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACTCAGTGGTTGAGACTACCAAAGACTCCAAGCAATTTGTCAAAGCCAACGCAAAGACCGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAATTTCCCTTTTTTTCCCTTCTAATAAACCCATATAGACCTATATGGAATTTTTTTCAATCCAAAAAATGGTTTAGAAGTGAGTTATGAGCTAATGTGCTTAATTCTTTGATTTGGACGAG

mRNA sequence

AAAAAATTAAAAAATTAAAAAAATTAAAAAATGGGAAGCTCCACCCTCTTCAAAAGCCTTCCAAAGTTTGGTCATTTTGGGGCAGCAGTCATTGCATGGAGATCACCCACTTCCAACACTTCCCTCCGTTTCGCTTCCAACCCCAAATTTATTCATACAAATCCACCACAAGATGGGTCAGAAGCCAAAGATGCCATAAACCCAGAGGCAAATGAAGGAATGACATCGGGTGAACAAATGATGCAGGACAAGGCTTACTCTACTGCAGAACACGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTAAGTGCAAGAGCGCAAGAGGTATCGGCAAAGGCAAAGCAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACTCAGTGGTTGAGACTACCAAAGACTCCAAGCAATTTGTCAAAGCCAACGCAAAGACCGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAATTTCCCTTTTTTTCCCTTCTAATAAACCCATATAGACCTATATGGAATTTTTTTCAATCCAAAAAATGGTTTAGAAGTGAGTTATGAGCTAATGTGCTTAATTCTTTGATTTGGACGAG

Coding sequence (CDS)

ATGGGAAGCTCCACCCTCTTCAAAAGCCTTCCAAAGTTTGGTCATTTTGGGGCAGCAGTCATTGCATGGAGATCACCCACTTCCAACACTTCCCTCCGTTTCGCTTCCAACCCCAAATTTATTCATACAAATCCACCACAAGATGGGTCAGAAGCCAAAGATGCCATAAACCCAGAGGCAAATGAAGGAATGACATCGGGTGAACAAATGATGCAGGACAAGGCTTACTCTACTGCAGAACACGTGAGTGAGAAGACAAGGGATATGGCAGGGATGCTAAGTGCAAGAGCGCAAGAGGTATCGGCAAAGGCAAAGCAGGCAATGGAAGCAGCAAAGGACTCAGCCCATAGGGCAAAGGACTCAGTGGTTGAGACTACCAAAGACTCCAAGCAATTTGTCAAAGCCAACGCAAAGACCGTTGAGAAGTGCATGAACACCAAGAACCGTTCTTAA

Protein sequence

MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEANEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKDSVVETTKDSKQFVKANAKTVEKCMNTKNRS

Homology

[Close]

BLAST of CmaCh05G008040 vs. ExPASy TrEMBL
Match: A0A6J1ICL4 (uncharacterized protein At4g13230 OS=Cucurbita maxima OX=3661 GN=LOC111472556 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 6.7e-73
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA 60
           MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA
Sbjct: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA 60

Query: 61  NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD 120
           NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD
Sbjct: 61  NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD 120

Query: 121 SVVETTKDSKQFVKANAKTVEKCMNTKNRS 151
           SVVETTKDSKQFVKANAKTVEKCMNTKNRS
Sbjct: 121 SVVETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of CmaCh05G008040 vs. ExPASy TrEMBL
Match: A0A6J1F3W7 (uncharacterized protein At4g13230 OS=Cucurbita moschata OX=3662 GN=LOC111439943 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 142/150 (94.67%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA 60
           MGSSTLFKSLPKFGHFGA  IA RSPTSNTSL FASNPKFIHTNPPQDGSEAKDAINPEA
Sbjct: 1   MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKFIHTNPPQDGSEAKDAINPEA 60

Query: 61  NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD 120
           NEGMT GE MMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAK+AMEAAKDSAHRAKD
Sbjct: 61  NEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAHRAKD 120

Query: 121 SVVETTKDSKQFVKANAKTVEKCMNTKNRS 151
           +VVETTKDSKQFVKANAKTVEKCMNTKNRS
Sbjct: 121 TVVETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of CmaCh05G008040 vs. ExPASy TrEMBL
Match: A0A6J1CSM2 (uncharacterized protein At4g13230-like OS=Momordica charantia OX=3673 GN=LOC111014202 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 6.2e-34
Identity = 97/154 (62.99%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQD-----GSEAKDA 60
           M S TL K+LPKF H GAA IA RS  SN  L   SNPKF+HT  PQD       EAKDA
Sbjct: 1   MASFTLLKTLPKFCHLGAA-IARRSTASNPILLLPSNPKFMHTGSPQDAINPGAPEAKDA 60

Query: 61  INPEANEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSA 120
           INP ANE M  GE MM + AYSTA+HV EK  DM GM+ +   E+S KAKQ MEAA DSA
Sbjct: 61  INPGANEAMMPGESMMTE-AYSTAQHVREKASDMGGMVXS---EISEKAKQTMEAAWDSA 120

Query: 121 HRAKDSVVETTKDSKQFVKANAKTVEKCMNTKNR 150
            RAKD+VVE TK+SK+FVKANA++V+K MNTKNR
Sbjct: 121 QRAKDTVVEATKESKEFVKANAESVKKSMNTKNR 149

[Close]

BLAST of CmaCh05G008040 vs. ExPASy TrEMBL
Match: A0A2N9J2L7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58716 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 9.2e-22
Identity = 76/153 (49.67%), Postives = 107/153 (69.93%), Query Frame = 0


Query: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIH-TNPPQDGSEAKDAINPE 60
           M S +L   LPKFGH GAA+   R  T N  L  ASNP+ I  ++ P+  S A DA+   
Sbjct: 1   MASLSLVTCLPKFGHAGAAIA--RRNTWNPRLFVASNPRLIQASSNPEASSVATDALKQG 60

Query: 61  ANEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQ-AMEA---AKDSA 120
           AN+   +G+  +++KA+STAEHV++KT+DMAGM+SA AQ+V+ KAKQ A EA   AKD+A
Sbjct: 61  ANDAKKTGD-TVKNKAFSTAEHVTQKTKDMAGMMSATAQDVTEKAKQTAQEAWGTAKDTA 120

Query: 121 HRAKDSVVETTKDSKQFVKANAKTVEKCMNTKN 149
            +AKD+V+   ++SK+ +K NA+TV++ MNTKN
Sbjct: 121 QKAKDTVLGKAEESKECIKENAETVKESMNTKN 150

[Close]

BLAST of CmaCh05G008040 vs. ExPASy TrEMBL
Match: A0A7N2KQQ7 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.6e-20
Identity = 73/153 (47.71%), Postives = 101/153 (66.01%), Query Frame = 0


Query: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIH-TNPPQDGSEAKDAINPE 60
           M S TL  SLPKFGH G+A++  R  T N  L  A  P+ I  ++ P+  S A DA+   
Sbjct: 1   MASLTLIVSLPKFGHAGSAIV--RRSTWNPRLFAACTPRPIQASSNPEASSPATDALKQG 60

Query: 61  ANEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQ----AMEAAKDSA 120
           ANE   +GE  ++DKA STAEHVS+ T+DMAG +SA AQ+V+ K KQ    A  +AKD+A
Sbjct: 61  ANEAKKTGE-TVKDKANSTAEHVSQNTKDMAGKMSATAQDVTEKVKQTAQEAWGSAKDTA 120

Query: 121 HRAKDSVVETTKDSKQFVKANAKTVEKCMNTKN 149
            +AKD+V+  T++SK+ +K +A+ V+  MNTKN
Sbjct: 121 QKAKDNVLGKTEESKESIKESAEAVKNSMNTKN 150

[Close]

BLAST of CmaCh05G008040 vs. NCBI nr
Match: XP_022973925.1 (uncharacterized protein At4g13230 [Cucurbita maxima])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA 60
           MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA
Sbjct: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA 60

Query: 61  NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD 120
           NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD
Sbjct: 61  NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD 120

Query: 121 SVVETTKDSKQFVKANAKTVEKCMNTKNRS 151
           SVVETTKDSKQFVKANAKTVEKCMNTKNRS
Sbjct: 121 SVVETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of CmaCh05G008040 vs. NCBI nr
Match: XP_022933143.1 (uncharacterized protein At4g13230 [Cucurbita moschata])

HSP 1 Score: 265.4 bits (677), Expect = 3.0e-67
Identity = 142/150 (94.67%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA 60
           MGSSTLFKSLPKFGHFGA  IA RSPTSNTSL FASNPKFIHTNPPQDGSEAKDAINPEA
Sbjct: 1   MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKFIHTNPPQDGSEAKDAINPEA 60

Query: 61  NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD 120
           NEGMT GE MMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAK+AMEAAKDSAHRAKD
Sbjct: 61  NEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAHRAKD 120

Query: 121 SVVETTKDSKQFVKANAKTVEKCMNTKNRS 151
           +VVETTKDSKQFVKANAKTVEKCMNTKNRS
Sbjct: 121 TVVETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of CmaCh05G008040 vs. NCBI nr
Match: KAG6598970.1 (hypothetical protein SDJN03_08748, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 140/150 (93.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA 60
           MGS TLFKSLPKFGHFGA  IA RSPTSNTSL FASNPK IHTNPPQDGSEAKDAINPEA
Sbjct: 1   MGSYTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKSIHTNPPQDGSEAKDAINPEA 60

Query: 61  NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD 120
           NEGMT GE MMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAK+AMEAAKDSAHRAKD
Sbjct: 61  NEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAHRAKD 120

Query: 121 SVVETTKDSKQFVKANAKTVEKCMNTKNRS 151
           +VVETTKDSKQFVKANAKTVEKCMNTKNRS
Sbjct: 121 TVVETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of CmaCh05G008040 vs. NCBI nr
Match: XP_023546410.1 (uncharacterized protein At4g13230 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.7 bits (657), Expect = 6.3e-65
Identity = 139/150 (92.67%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA 60
           MGSSTLFKSLPKFGHFGA  IA RSPTSNTSL FASNPK IHTNPPQDG EAKDAI PEA
Sbjct: 1   MGSSTLFKSLPKFGHFGAPAIARRSPTSNTSLLFASNPKSIHTNPPQDGLEAKDAIKPEA 60

Query: 61  NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEAAKDSAHRAKD 120
           NEGMT GE MMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAK+AMEAAKDSAHRAKD
Sbjct: 61  NEGMTPGEHMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKEAMEAAKDSAHRAKD 120

Query: 121 SVVETTKDSKQFVKANAKTVEKCMNTKNRS 151
           +VVETTKDSKQFVKANAKTVEKCMNTKNRS
Sbjct: 121 TVVETTKDSKQFVKANAKTVEKCMNTKNRS 150

[Close]

BLAST of CmaCh05G008040 vs. NCBI nr
Match: XP_038889268.1 (uncharacterized protein At4g13230-like [Benincasa hispida])

HSP 1 Score: 205.7 bits (522), Expect = 2.8e-49
Identity = 118/154 (76.62%), Postives = 129/154 (83.77%), Query Frame = 0


Query: 1   MGSSTLFKSLPKFGHFGAAVIAWRSPTSNTSLRFASNPKFIHTNPPQDGSEAKDAINPEA 60
           M SSTLFK+LPKFGHFGAA I  RS TSNT+L  ASNPKFIHTN  QDGSEAKDAINP A
Sbjct: 1   MASSTLFKNLPKFGHFGAA-ITRRSTTSNTTLILASNPKFIHTNLSQDGSEAKDAINPGA 60

Query: 61  NEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAMEA----AKDSAH 120
           NEGM  GE MM+DKAYSTAEHVSEKT+DMAGM+SA+A  VSAKAKQAMEA    AKD+A 
Sbjct: 61  NEGMMPGENMMKDKAYSTAEHVSEKTKDMAGMVSAKAHAVSAKAKQAMEAAWDSAKDTAQ 120

Query: 121 RAKDSVVETTKDSKQFVKANAKTVEKCMNTKNRS 151
           RAKD++V+T  DSKQFVKAN K+VEK MNTKN S
Sbjct: 121 RAKDTLVDTANDSKQFVKANVKSVEKSMNTKNHS 153

[Close]

BLAST of CmaCh05G008040 vs. TAIR 10
Match: AT4G13230.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 7.8e-05
Identity = 34/99 (34.34%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 50  SEAKDAINPEANEGMTSGEQMMQDKAYSTAEHVSEKTRDMAGMLSARAQEVSAKAKQAME 109
           S  KD++  +A E         Q K    A+  ++   D AG L  +A+     A++A +
Sbjct: 31  STRKDSVCDKATEA--------QQKVAKKADEGAQTISDAAGNLKDKAKNT---AEEAWD 90

Query: 110 AAKDSAHRAKDSVVETTKDSKQFVKANAKTVEKCMNTKN 149
             KD+  + KD+V   T+++K+ +KA AKTVE+ MNTKN
Sbjct: 91  KVKDTTEKIKDTVTGKTEETKESIKATAKTVERSMNTKN 118

The following BLAST results are available for this feature:

BLAST of CmaCh05G008040 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh05G008040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ICL4	6.7e-73	100.00	uncharacterized protein At4g13230 OS=Cucurbita maxima OX=3661 GN=LOC111472556 PE...	[more]
A0A6J1F3W7	1.5e-67	94.67	uncharacterized protein At4g13230 OS=Cucurbita moschata OX=3662 GN=LOC111439943 ...	[more]
A0A6J1CSM2	6.2e-34	62.99	uncharacterized protein At4g13230-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A2N9J2L7	9.2e-22	49.67	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58716 PE=4 SV=1	[more]
A0A7N2KQQ7	6.6e-20	47.71	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CmaCh05G008040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973925.1	1.4e-72	100.00	uncharacterized protein At4g13230 [Cucurbita maxima]	[more]
XP_022933143.1	3.0e-67	94.67	uncharacterized protein At4g13230 [Cucurbita moschata]	[more]
KAG6598970.1	1.3e-65	93.33	hypothetical protein SDJN03_08748, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023546410.1	6.3e-65	92.67	uncharacterized protein At4g13230 [Cucurbita pepo subsp. pepo]	[more]
XP_038889268.1	2.8e-49	76.62	uncharacterized protein At4g13230-like [Benincasa hispida]	[more]

BLAST of CmaCh05G008040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13230.1	7.8e-05	34.34	Late embryogenesis abundant protein (LEA) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..128
None	No IPR available	PANTHER	PTHR47372:SF21	LATE EMBRYOGENESIS ABUNDANT PROTEIN, GROUP 3-LIKE	coord: 2..148
None	No IPR available	PANTHER	PTHR47372	DAUER UP-REGULATED-RELATED	coord: 2..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G008040.1	CmaCh05G008040.1	mRNA