CmaCh05G007590 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G007590
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionIsopentenyl-diphosphate Delta-isomerase
LocationCma_Chr05: 4407947 .. 4415507 (+)
RNA-Seq ExpressionCmaCh05G007590
SyntenyCmaCh05G007590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGCGACGTGAGACAGCGCGGCAGTTATTCACGCCACCTCCGATCTTCTTCAAAAGGCGATTTGCAGGTCATTTGATCCTCAAATGGTGGATTCCCCAATTCCCCAATGTTTCTAATAACCTCTCACCTCCTCAAAACCCCTCTCTCATTCCCCCCTCCCATTTCCTTCTCTTCCAAATGTCGTTTCGCTTCTTCTGTTTCCCCCTCTCGCCCCCTCTTCGCTAGGGTCTCCCGCTGCTATCTCTCCACCAACACCACCATGGATTCCGCTGCTGATGCTTCCATGGATGCCGTTCAGCGGCGCCTTATGTTCGATGACGAGTGCGTTTCTTGTTAATTTCCCTTCCCTTCCCGATTTCTGTTCTGGGTTTCTTTTGTTTGGTCTAAATTTTGGATTATTTTTGTTTGCTTGAGTTCTTTTGATTTCCGTTTCTACCATGGATGCTGATATTCGTCTTTTTTTTTTTGTTGTTTGGCTTCTGGAAGGAGTTCGATTGTTTTGTTAAATTGCTAAGGATTCTGTTTTCTAGCCGTATAAAGCTTTGTCTAGTTTGACAGTTTTATGAATGAAGAAGCTCATTGTTCATGGATGGTTGTGAATGTCTAAATATTTGGCAGGCCAGGAGTAAGAAATTGCTACTTGCTACTCTAATCTAAGAATTCAGCCATTTATGTGTGGCTATTGGTTAAATCTTTGAAATTAATCAAGCTAGAGGGCTTTGGTGGAACCCCCATTGAATTAAATTAAGGGTTCTTTGTGTTTATCAGCAAATTCCATATTGGTGAAGTTAAGTTTGAGTTAATGGTGCATGAGCTAAGGTAGATGGCCATTTGTTAGTCACATGGACAAGAATTCAAATGCACCTTATTGTGAACCATGGTGACCATATGAGAAATTATTGGATATATGTGATACCAAAATCTAGATACCCCACATTTACCTACAGTCCTATATATTGAAACTTTCTATATCACTATTCGTTTAGGATTAGTTAATTTATCTTTGCATATGAACTTACTCTTTCTGCCTAGTGATTTTCATTTCAAGATTGACTTCCAAGCTCAATTTTATTCGCCTCATTTTCTTGATACTTTTCTTCTTTCTTTAGAGACTTCTATCATTATGCTCTGATTGTTTAATGGCGTAATCATGCCAGAAATTGATGAATTCTCTTTAATTGAAACCTTGCAGATGCATTTTGGTGGATGAAAGTGATAATATTGTTGGTCACGATTCTAAATATAATTGTAAGTACTGCCTGGGTAACCCTCATTTTATTTATTATGTGTTATGTATCTTTAAGCAGACTTTTAAACCTCGAACCCAGCGAGGTAAAAAGGGTTTGTTTATGGATTTACTCATTATTTTTGTATTATGAACATATAATTATGTTGTACTTTCTTTTTCAAATGGGCGTGGATGTAAATGTTCTATACCCCTTGTATTTCCACCTCGCTTCTCCTCCTTTTCCCCTAATTATGCTATGAATTTGTAGGATTTCAACTTAAAATATCAACAAGGCATTGCAAAGCGAATTGTCCATACGTAAAATCATAATTATTGATACGGGCCTTTTCCACATAATCCACATAAAAAGGGAATCTTTTGTTACAATAGAAGCATAAGTGACCAAATCCTTCTAGAGCCCAAACCTCCATTTCTCCCACCCGTTGTCCGCCTTGCTTGGCCCTTCCTCTAAGGGGTTGTTGTGTAACAAGTGCATAATGTCCACTGGAACGTCCGTGTATTTTATCATCAACTTGATGAATTAATTTCAAGATATAAGGCTGTATTTGATGCATTACATCTATTACACCTATCAAGTTAGGTAAAATTTCATGTGATTCAGTAAACATAATCTAAATTCCATCATTGCTAAATCGATCTCCTTGTTTCTTCTTGTTGTTCAAACTTTTATTCTGATCATCTTGATTTCTTTTTGGTCTTATAATTTGCAGGTCACTTGATGGATAATATTGAGTCAAACAAAGCACTCCATAGAGCCTTCAGTGTCTTCTTATTTAACAATAAATTTGAGTTGCTTCTTCAGGTATGTAGTAACAATAATTTGGGTCTTAATCTGTATACTTACAGCATGGGGTTGCATGTTCTCTTCCGTTTTTTAAGACCATCTCCAACCATTAATTAACTCATACTAAAACCATCTTCATTTTGTTTCCTTTCCCAAAAGGAAGAAGTAAAAAACGTACTAAAGGAAGATAAAAGCTGGCTCTTTTCCAGAAAATTTTGACACTTGAACAGCTTCTGCCTATACCAAATACACAAATAGAACACATGACATTAGACCAGGCGAGAACGAGCAATGGAACTCAAAATGAACTTCCCACTTGCTCTCATGCTTCAGCGCATGGAAGTGGCGATGGACCACTTATCCTCATGTGTGACATGTGCAGCTTATTCAAGCAAACAGCCAATGAAACTTATCTCTCTTTAACTCTACCTGGGGTTGGTGGTGTTGACAAAAGGCCACCTCGAAGTGATGGCCTAAATTTCAAACCATAGCATCACTTGAAATAAATTCATAACGACCACAGAGAATTCAGAATGATGTTGTAATAACCTATGATATAATACTGTTTTAGTATTTCTTATTTTCACTTAGGCATGCATGAAAGCCATGAACCAAAAGGGAAAAGGACTGATAAATCCCTAGATCTAACGCATTTACACTGGCATACATATAATATATGCTGTAACAAACTTTTTTTTCTTCTTATTTTGTTAGCAACGTTCTGCGACAAAAGTAACATTCCCTCTTGTTTGGACGAACACCTGCTGCAGCCATCCATTGTACAGAGAATCAGAGCTTATTGAGGAGGATGCACTTGGTATGTGTTGGATTTCCTTTTATGCTATGCATGTATTCCTTATTTATATTTGTAATATTTCTTTCCTTATTGGTTGATGGTCTTTCTTCTATATAAGAGTACCTTGTATTTGTTTTAGATGAGTAAGAAGAAATACAATAATATTATTCTTCTTCCTAAGTTTAAGATGGTATTAGAGCATATGCAACTCCTAGCTGCCTTTAAAACCCTCACCATTTTTTGGAACCATAGTCACCGCCTTTGGAACCCTGGTTGCCATTCTTGACTGGTGCATCCTACTTGTATCGTTGTTGGTTTAATTTTCCTTGACCCATATGCTTCTATCGTCACATTCCGACCATAACTAGGGACCTTCGTGTTCGTCTTCAATCATAACCCATTATTGACTTAGTCAAGACTTCGTATATGGTCTTCGCTAGAGGTGTTTGGGTCTCCGTCGCTCATCTTTGTTGTTCGCCGTGGTCCTTGTCATAGTTGTTGCAATTTCGTTGGATCATCACTGAGGATTCCTCGCAACCCTAGTTTGTCGTCGTCGTGTCTCTCTGCCATCATCGCTGTCTGTGTCTTCTGCCACCGCTTTCAATTTCTGGTTTGTGATTGATTTGCATTCAACATTGGTTCAAGCATTCGTGTTTTTTGGTTTGGTTCAAACTTGGTTGGTTCAATTTGAGATCTAATTCAGATCGGTTCAAGATCTGATTCGATTCACTATTTGATTGGTTAGGACGGTTTGGTGAAAAAAAGAAATTTGGTTTTTTTTTTCTAACTAAGGTGATTTTTATGTCATTGTTGTGACTCAAGTTTCTACCTTAAAACGTTTATTTACCAATTCATTTAAAAATGGTAATTGCTCCATTTCATTCCAAACCGTTATAGTTAATTCATAGTGATGTTTGGGGTCCTTCTTAAGTTTTGACTCACTTTTATTAATGATCACACGTGTCTATCTTGGGTCTATTTAATTACAAATAGTGTGAGGTTAAAAAATATTTCTATAATCTGATTGAAATCCAATTTCAAATAACAATCAACATTTTACACACTGACAATAGAGCTGAATATTTCAACGGGTACTTGAATGATTTTTTACATCAATCTACTTGTTGAGTTACCTATCAACAAAATGGGATTGATTATAAAAAAAAAAAAATAGGCACTTACGAGAGGTTGCACATGCCATAGTTTTTTCTATGTATGTTCCTAAGCATTTATGGGAGAAAGCTATACTCACCGCTACTTAATAAATTCCTGTTCAAGTATTAAGTTTTAGTGCATCTCTTGAATGCCTTGAGACTGATTTTCCAAATGGTCGTACACATTCTGTTCACATACTGGTTTTTTTACGATCAAAACTTAATCACAGGGCTACTAAATGCACATTTTTGGGTTATGCTTCTAATCAAAAGGTGTATAGATGCTTTGATCCTTAGTCAAAAAGGTTTTATATGAGCATGGACGTGTGTTTTTTAGAAAACCAACCATATTTGACCTAAAATTCTTTTTCGAGGGAGAATCAAATATAGAAGATAATTTATGGGATCTATTTGAACCCTTCCTTATGTCATTCATCTCGACTTGTCTATCCTTAGTCCTTTGATATCAAGTATATAAACTTCTCATTTAGGAGGAATAATACTACAAAATGACTCTAGGTCAAATTTCTTAATTAAAGTTTTATGCTAGAAGATCAGTCGATCAAAGGAACGAAGGTCTATTAGTCCCTCTTACGTTCTTCCTAATCTTTCGGATGTTCAAAATGCCTTTCCTATTATTTTTTTATCTTGATGTTCCTATTGCTATTAGGAAAAGTACTTGAACCTGTACTAAATCTCCCATTGCAGATACTATCTCATAAGCAAAATTTTCAAATAGTCATAATAGAACTGTTATATTAATTGTCTATGTTGATGATATTATCACAAGTAATGATGAAGATGGATAAGTCGATTTTAAGAACAAATTTGCAAGTGAGTTTCAAATAAGAATCTTGGGGGACCTTGAAATACTTTTTAGAGATGGAGTTTGCTAAGAACTCCTATCGAACCGAATGTCATGCAAGAATTAAAGGCCAAAGACATATACCAAAAGCTTGTGACTAGGCCAGTCTATTTAACTCACACTCATTCATAAATAGCATTTTAGTAACTAGGGTGAGTCAATTCATGCATTCACTTAAACCGATTCATTATGAAGCAGTGGATAGAATTTTGAGATATCTGGAAGGAACTTTAGGTAAAGGTATATTATTTTAGAACCATGATAATTTTCAAGTTGAAGTGTTTACTGATGTAGATGGGGCTGAAAGCATTATGGATAGAAGATCTACTTTTGGTTATAGTTTGTTTTGTTGGAGGAAATTTACTTACATGGCATAATAGAGAACAAAATGTAGTGGTCAGAAGTAGTGCCGAAGTAAAGTTTAGAGCCTTAGCATATGAAATTTGTGAACGACATGGATTATCACAATACTTAATGAATTGAAAATGTCTAAAAAAAACACCTATACGGGTCTATTGTGACCTTGCCATAACACATAATCCTGTCCTACAAGATAGGACAAACCAAATGAAGTTGACAAGCATTTCATAAAAGGGAAGATTGATGATGTAATGTGCATATCTTATCTTCCGACGACAGAACAAACGACTCAATATGTGAACTAAATCTGTCAAAACGACAATTTGATAACTTATCAACAAGCTGACTATGGAGGATATCTACAAACCAGCTTGAGGAGAAGTGTTGGATTTCCTTTTATGTCTTTTGTATAATTGCTTGTGTATTAGGTATATATCCCTTATTTATATTTGTAATTTTTCTTTCCTTATTGGTTGATGGATGAACTGTAGGAGTAAGGAATGCTGCACAGAGAAAACTTTTTGATGAACTTGGCATTGCTGCTGAAGACGTACCAGTTGATCAATTCACATCCATTGGTCGCATTCTCTATAAGGCTCCATCTGATGGAAAATGGGGAGAGCATGAGCGTAAATATTCCAACTCTATCGCTATCGTTGTGAATTCATCTGTTCACTGAATTTATTAACATGTTGTCTGCGTGATTCTGGAAGTCTTTTAGTTTGATCCCCTGCCTTGATCAGATGATCAGAGGACTAGTTATTGCACTATATTTAGACTCTTGAATTGAGTTCGTGTCGTTCATCCTATCAGTTTCAGCTTTTAAGTTTTGAATCGAGTTTAGTGACGAATATGACATTAAAAAAGGATCTACATTCAAACACCTATAATAGTTCTTCACTTGTCGGGTTTTCTGCGAATTCCTGATCCGTAGATGGTAGAGGCTGTTAAGAACATATATAAACAGTTTAACCTTTTTGTGTATCCTGATAATTCGACCGTTGCCATATATCTTGTTGCTTGCAGTCGATTATCTCCTATTCGTGGTTCGGAATGTCCATGTGAATCCAAACCCGGACGAAGTGGCGGATATCAAATATGTGAACCAGGAACAGTTGAAAGAACTGGTGAGGAAAGCAGATGCCGGAGAGGGTGGACTGAAGCTTTCACCTTGGTTCAGGCTAGTTGTGAACAGCTTCTTATATAAATGGTGGGATCATCTTCAGAAAGGAACTCTCAATGAAGTTGTCGACATGAAAACCATTCACAAGCTTACCTGAATCCATTCACTGTGTGTGGTTATTATGCTTTAGGAACAAAGATGAGTTCAATAATTGGGATATCGACACAGGTAGACTATTTATGTAACATTTTTCTTACCAAAATGCTTGAAATTTTAGAAATTCATAGACTTTGGTCCACAAGTGACCTGAATTTACGATCATATGCAAAATCTTAAATGAGTAACTCCGAGTAAGAATGACTTTTGTAGTCGATTTATACGTCTACCATTTTAGGACAAGAGAACAATAGGTCACATTTTCTCATTGGTTCGAGACAAACTTAGTCTATAGTTGAATTATAAATAAATTATTTAGTATAGAATCAGTGGTATTAATAAAATTTTGGCAATCACTCGACCACCTCCATTCCATCTCACAACTTCCTCATTGTTCCCTTGAAAAATCTCATTTTGATCTTTATGTTTCACAAGTGAGATTCCGCCGGTAAAGATTCTAACATTGTTTCTCTTAATTACTTTGAGATTTAGATTCCAACCATCCTTCAATAGTCTTAACAGGTGCTTATTCTTCTACTTTCTACAGCTTAGCACACGGTCTAAGCCACTCGAAGGCGTCAGCTCACACGCGAGCTTGGAGACGGCTCAGAGGTGGCTTACCCCAAGCATCGACCCACATGCGGCTCAATCCAAGCTGCTCTCGTACGGTTTGGACAAGTCACGTCCCTTGCAACCGACTTGGCTATGTCTTTAGTGACTCCTTTTTAACACAACTTTGACAGCTTAGACGACTCTGTTTTTTTTATTTCTGACTTTGTTCTACCATTTTGGATGGAAGTATTTGAGGTTGGTAAGTTGTTTTGTCGAATTGTTTTGGATTAAGTAGAAGAGTTAGGTGAAATTAGTGCAGTTTAATGTTATGGAACATCACAAGTGGAATCAGACCATGACGATCAGAATTAGACTAGTAAAAGCTAAGGAAATTTAGTGACATCTGCTTACTATCAGAATGTCTTCGGACTAGGTCAGGTAAATTGTATGTTCTATGAACAACGCATGCTATGTGACTTATCTATATGTTATTTCTTGTATTATGTTATGTTTAAGAAATTT

mRNA sequence

TCGCGACGTGAGACAGCGCGGCAGTTATTCACGCCACCTCCGATCTTCTTCAAAAGGCGATTTGCAGGTCATTTGATCCTCAAATGGTGGATTCCCCAATTCCCCAATGTTTCTAATAACCTCTCACCTCCTCAAAACCCCTCTCTCATTCCCCCCTCCCATTTCCTTCTCTTCCAAATGTCGTTTCGCTTCTTCTGTTTCCCCCTCTCGCCCCCTCTTCGCTAGGGTCTCCCGCTGCTATCTCTCCACCAACACCACCATGGATTCCGCTGCTGATGCTTCCATGGATGCCGTTCAGCGGCGCCTTATGTTCGATGACGAATGCATTTTGGTGGATGAAAGTGATAATATTGTTGGTCACGATTCTAAATATAATTGTCACTTGATGGATAATATTGAGTCAAACAAAGCACTCCATAGAGCCTTCAGTGTCTTCTTATTTAACAATAAATTTGAGTTGCTTCTTCAGCAACGTTCTGCGACAAAAGTAACATTCCCTCTTGTTTGGACGAACACCTGCTGCAGCCATCCATTGTACAGAGAATCAGAGCTTATTGAGGAGGATGCACTTGGAGTAAGGAATGCTGCACAGAGAAAACTTTTTGATGAACTTGGCATTGCTGCTGAAGACGTACCAGTTGATCAATTCACATCCATTGGTCGCATTCTCTATAAGGCTCCATCTGATGGAAAATGGGGAGAGCATGAGCTCGATTATCTCCTATTCGTGGTTCGGAATGTCCATGTGAATCCAAACCCGGACGAAGTGGCGGATATCAAATATGTGAACCAGGAACAGTTGAAAGAACTGGTGAGGAAAGCAGATGCCGGAGAGGGTGGACTGAAGCTTTCACCTTGGTTCAGGCTAGTTGTGAACAGCTTCTTATATAAATGGTGGGATCATCTTCAGAAAGGAACTCTCAATGAAGTTGTCGACATGAAAACCATTCACAAGCTTACCTGAATCCATTCACTGTGTGTGGTTATTATGCTTTAGGAACAAAGATGAGTTCAATAATTGGGATATCGACACAGCTTAGCACACGGTCTAAGCCACTCGAAGGCGTCAGCTCACACGCGAGCTTGGAGACGGCTCAGAGGTGGCTTACCCCAAGCATCGACCCACATGCGGCTCAATCCAAGCTGCTCTCGTACGGTTTGGACAAGTCACGTCCCTTGCAACCGACTTGGCTATGTCTTTAGTGACTCCTTTTTAACACAACTTTGACAGCTTAGACGACTCTGTTTTTTTTATTTCTGACTTTGTTCTACCATTTTGGATGGAAGTATTTGAGGTTGGTAAGTTGTTTTGTCGAATTGTTTTGGATTAAGTAGAAGAGTTAGGTGAAATTAGTGCAGTTTAATGTTATGGAACATCACAAGTGGAATCAGACCATGACGATCAGAATTAGACTAGTAAAAGCTAAGGAAATTTAGTGACATCTGCTTACTATCAGAATGTCTTCGGACTAGGTCAGGTAAATTGTATGTTCTATGAACAACGCATGCTATGTGACTTATCTATATGTTATTTCTTGTATTATGTTATGTTTAAGAAATTT

Coding sequence (CDS)

ATGTTTCTAATAACCTCTCACCTCCTCAAAACCCCTCTCTCATTCCCCCCTCCCATTTCCTTCTCTTCCAAATGTCGTTTCGCTTCTTCTGTTTCCCCCTCTCGCCCCCTCTTCGCTAGGGTCTCCCGCTGCTATCTCTCCACCAACACCACCATGGATTCCGCTGCTGATGCTTCCATGGATGCCGTTCAGCGGCGCCTTATGTTCGATGACGAATGCATTTTGGTGGATGAAAGTGATAATATTGTTGGTCACGATTCTAAATATAATTGTCACTTGATGGATAATATTGAGTCAAACAAAGCACTCCATAGAGCCTTCAGTGTCTTCTTATTTAACAATAAATTTGAGTTGCTTCTTCAGCAACGTTCTGCGACAAAAGTAACATTCCCTCTTGTTTGGACGAACACCTGCTGCAGCCATCCATTGTACAGAGAATCAGAGCTTATTGAGGAGGATGCACTTGGAGTAAGGAATGCTGCACAGAGAAAACTTTTTGATGAACTTGGCATTGCTGCTGAAGACGTACCAGTTGATCAATTCACATCCATTGGTCGCATTCTCTATAAGGCTCCATCTGATGGAAAATGGGGAGAGCATGAGCTCGATTATCTCCTATTCGTGGTTCGGAATGTCCATGTGAATCCAAACCCGGACGAAGTGGCGGATATCAAATATGTGAACCAGGAACAGTTGAAAGAACTGGTGAGGAAAGCAGATGCCGGAGAGGGTGGACTGAAGCTTTCACCTTGGTTCAGGCTAGTTGTGAACAGCTTCTTATATAAATGGTGGGATCATCTTCAGAAAGGAACTCTCAATGAAGTTGTCGACATGAAAACCATTCACAAGCTTACCTGA

Protein sequence

MFLITSHLLKTPLSFPPPISFSSKCRFASSVSPSRPLFARVSRCYLSTNTTMDSAADASMDAVQRRLMFDDECILVDESDNIVGHDSKYNCHLMDNIESNKALHRAFSVFLFNNKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGVRNAAQRKLFDELGIAAEDVPVDQFTSIGRILYKAPSDGKWGEHELDYLLFVVRNVHVNPNPDEVADIKYVNQEQLKELVRKADAGEGGLKLSPWFRLVVNSFLYKWWDHLQKGTLNEVVDMKTIHKLT
Homology
[Close]
BLAST of CmaCh05G007590 vs. ExPASy Swiss-Prot
Match: O48964 (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata OX=16922 GN=IPI1 PE=2 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 1.3e-114
Identity = 190/232 (81.90%), Postives = 217/232 (93.53%), Query Frame = 0 

Query: 53  DSAADASMDAVQRRLMFDDECILVDESDNIVGHDSKYNCHLMDNIESNKALHRAFSVFLF 112
           D+A DA MDAVQ+RLMF+D+CILVDE+DN+VGHD+KYNCHLM+ IES   LHRAFSVFLF
Sbjct: 3   DAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLF 62

Query: 113 NNKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGVRNAAQRKLFDELGIA 172
           N+K+ELLLQQRSATKVTFPLVWTNTCCSHPLYRESELI+E+ALG RNAAQRKL DELGI 
Sbjct: 63  NSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIP 122

Query: 173 AEDVPVDQFTSIGRILYKAPSDGKWGEHELDYLLFVVRNVHVNPNPDEVADIKYVNQEQL 232
           AEDVPVDQF  +GRILYKAPSDGKWGEHELDYLLF+VR+V+VNPNPDEVADIKYV ++QL
Sbjct: 123 AEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVTRDQL 182

Query: 233 KELVRKADAGEGGLKLSPWFRLVVNSFLYKWWDHLQKGTLNEVVDMKTIHKL 285
           KEL+RKADAGE GLKLSPWFRLVV++FL+KWWDH++KGT++E  DMK+IHKL
Sbjct: 183 KELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234

[Close]
BLAST of CmaCh05G007590 vs. ExPASy Swiss-Prot
Match: O48965 (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata OX=16922 GN=IPI2 PE=2 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 3.8e-114
Identity = 206/296 (69.59%), Postives = 239/296 (80.74%), Query Frame = 0 

Query: 3   LITSHLLKTPLSFPPPISF---SSKCR----FASSVSPSRPLFARVSRCYLS------TN 62
           L +S L    L   P +SF   SS  R      S    S  L  RVS  + S      T+
Sbjct: 14  LSSSFLASPKLKLHPRLSFFFHSSSFRNHIITRSVFCSSSHLSVRVSSYHSSVAAKATTS 73

Query: 63  TTMDSAADASMDAVQRRLMFDDECILVDESDNIVGHDSKYNCHLMDNIESNKALHRAFSV 122
              D+A DA MDAVQRRLMF+DECILVDE+D++VGHD+KYNCHLM+ IES+  LHRAFSV
Sbjct: 74  AMGDTATDAGMDAVQRRLMFEDECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSV 133

Query: 123 FLFNNKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGVRNAAQRKLFDEL 182
           FLFN+K+ELLLQQRSATKVTFPLVWTNTCCSHP YRESEL++E+ALGVRNAAQRKL DEL
Sbjct: 134 FLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDEL 193

Query: 183 GIAAEDVPVDQFTSIGRILYKAPSDGKWGEHELDYLLFVVRNVHVNPNPDEVADIKYVNQ 242
           GI AEDVPVDQF  +GR+LYKAPSDGKWGEHELDYLLF++R+V+V+PNPDEVAD+KYVNQ
Sbjct: 194 GIPAEDVPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKYVNQ 253

Query: 243 EQLKELVRKADAGEGGLKLSPWFRLVVNSFLYKWWDHLQKGTLNEVVDMKTIHKLT 286
           +QLK+L+RK DAGE GLKLSPWFRLVV +FL+KWWDH++KGTL +  DMKTIHKLT
Sbjct: 254 DQLKDLLRKVDAGEEGLKLSPWFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309

[Close]
BLAST of CmaCh05G007590 vs. ExPASy Swiss-Prot
Match: Q42553 (Isopentenyl-diphosphate Delta-isomerase II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IPP2 PE=1 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 5.0e-114
Identity = 204/270 (75.56%), Postives = 231/270 (85.56%), Query Frame = 0 

Query: 20  SFSSKCRFA----SSVSPSR-PLFARVSRCYLSTNTTMDSAADASMDAVQRRLMFDDECI 79
           SFSS  RFA    SS+SP + P F   S       T M    DA MDAVQRRLMF+DECI
Sbjct: 22  SFSS-FRFAHRPLSSISPRKLPNFRAFS------GTAMTDTKDAGMDAVQRRLMFEDECI 81

Query: 80  LVDESDNIVGHDSKYNCHLMDNIESNKALHRAFSVFLFNNKFELLLQQRSATKVTFPLVW 139
           LVDE+D +VGHDSKYNCHLM+NIE+   LHRAFSVFLFN+K+ELLLQQRS TKVTFPLVW
Sbjct: 82  LVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVW 141

Query: 140 TNTCCSHPLYRESELIEEDALGVRNAAQRKLFDELGIAAEDVPVDQFTSIGRILYKAPSD 199
           TNTCCSHPLYRESELI+++ALGVRNAAQRKL DELGI AEDVPVD+FT +GR+LYKAPSD
Sbjct: 142 TNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSD 201

Query: 200 GKWGEHELDYLLFVVRNVHVNPNPDEVADIKYVNQEQLKELVRKADAGEGGLKLSPWFRL 259
           GKWGEHELDYLLF+VR+V V PNPDEVA+IKYV++E+LKELV+KADAGE GLKLSPWFRL
Sbjct: 202 GKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRL 261

Query: 260 VVNSFLYKWWDHLQKGTLNEVVDMKTIHKL 285
           VV++FL KWWDH++KGTL E +DMKTIHKL
Sbjct: 262 VVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284

[Close]
BLAST of CmaCh05G007590 vs. ExPASy Swiss-Prot
Match: Q39471 (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri OX=36903 GN=IPI2 PE=3 SV=2)

HSP 1 Score: 412.1 bits (1058), Expect = 5.0e-114
Identity = 207/291 (71.13%), Postives = 238/291 (81.79%), Query Frame = 0 

Query: 4   ITSHLLKTPLS----------FPPPISFSSKCRFASSVSPSRPLFARVSRCYLSTNTTMD 63
           +TS L K  LS           PPP+  S   R A+ +S    L   +S   ++T+  M 
Sbjct: 3   LTSRLYKLRLSSLHSFGSLPILPPPLRSS---RIAAPLS----LRVSLSTRSIATSIAMG 62

Query: 64  SAADASMDAVQRRLMFDDECILVDESDNIVGHDSKYNCHLMDNIESNKALHRAFSVFLFN 123
            AADA MDAVQRRLMFDDECILVDE D +VGH+SKYNCH+ + IES   LHRAFSVFLFN
Sbjct: 63  EAADAGMDAVQRRLMFDDECILVDEVDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFN 122

Query: 124 NKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGVRNAAQRKLFDELGIAA 183
           +KFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELI+E+ LGVRNAAQRKL DELGI A
Sbjct: 123 SKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPA 182

Query: 184 EDVPVDQFTSIGRILYKAPSDGKWGEHELDYLLFVVRNVHVNPNPDEVADIKYVNQEQLK 243
           EDVPVD+FT + R+LYKAPSDGKWGEHELDYLLF+VR+V V+PNPDEVA+IKYVN+EQLK
Sbjct: 183 EDVPVDEFTPLSRMLYKAPSDGKWGEHELDYLLFIVRDVAVHPNPDEVAEIKYVNREQLK 242

Query: 244 ELVRKADAGEGGLKLSPWFRLVVNSFLYKWWDHLQKGTLNEVVDMKTIHKL 285
           EL++KADAGE GLKLSPWFRLVV++FL KWWDH++KGTL+E VDMK+IHKL
Sbjct: 243 ELLKKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286

[Close]
BLAST of CmaCh05G007590 vs. ExPASy Swiss-Prot
Match: Q39664 (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana OX=3938 GN=IPI2 PE=3 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 9.3e-113
Identity = 209/289 (72.32%), Postives = 237/289 (82.01%), Query Frame = 0 

Query: 4   ITSHLLKTPL-SFPPPISFSS----KCRFASSVSPSRPLFARVSRCYLSTNTTM---DSA 63
           +TS L K  L S P   SF +         SS  P+ PL  R S    S  T++   ++A
Sbjct: 3   LTSRLYKPRLFSLPSQHSFRALPILSPPLRSSCIPA-PLSVRASLSTRSIATSIAMGEAA 62

Query: 64  ADASMDAVQRRLMFDDECILVDESDNIVGHDSKYNCHLMDNIESNKALHRAFSVFLFNNK 123
           ADA MDAVQRRLMFDDECILVDE D +VGH+SKYNCHL + IES   LHRAF+VFLFN+K
Sbjct: 63  ADAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSK 122

Query: 124 FELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGVRNAAQRKLFDELGIAAED 183
           FELLLQQRSATKVTFPLVWTNTCCSHPLYRESELI+E+ LGVRNAAQRKL DELGI AED
Sbjct: 123 FELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAED 182

Query: 184 VPVDQFTSIGRILYKAPSDGKWGEHELDYLLFVVRNVHVNPNPDEVADIKYVNQEQLKEL 243
           VPVD+FT + R+LYKAPSDGKWGEHELDYLLF+VR+V ++PNPDEVADIKYVN+EQLKEL
Sbjct: 183 VPVDEFTPVSRMLYKAPSDGKWGEHELDYLLFIVRDVGIHPNPDEVADIKYVNREQLKEL 242

Query: 244 VRKADAGEGGLKLSPWFRLVVNSFLYKWWDHLQKGTLNEVVDMKTIHKL 285
           +RKADAGE GLKLSPWFRLVV++FL KWWDH++KGTL+E VDMKTIH L
Sbjct: 243 LRKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290

[Close]
BLAST of CmaCh05G007590 vs. TAIR 10
Match: AT3G02780.1 (isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 )

HSP 1 Score: 412.1 bits (1058), Expect = 3.5e-115
Identity = 204/270 (75.56%), Postives = 231/270 (85.56%), Query Frame = 0 

Query: 20  SFSSKCRFA----SSVSPSR-PLFARVSRCYLSTNTTMDSAADASMDAVQRRLMFDDECI 79
           SFSS  RFA    SS+SP + P F   S       T M    DA MDAVQRRLMF+DECI
Sbjct: 22  SFSS-FRFAHRPLSSISPRKLPNFRAFS------GTAMTDTKDAGMDAVQRRLMFEDECI 81

Query: 80  LVDESDNIVGHDSKYNCHLMDNIESNKALHRAFSVFLFNNKFELLLQQRSATKVTFPLVW 139
           LVDE+D +VGHDSKYNCHLM+NIE+   LHRAFSVFLFN+K+ELLLQQRS TKVTFPLVW
Sbjct: 82  LVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVW 141

Query: 140 TNTCCSHPLYRESELIEEDALGVRNAAQRKLFDELGIAAEDVPVDQFTSIGRILYKAPSD 199
           TNTCCSHPLYRESELI+++ALGVRNAAQRKL DELGI AEDVPVD+FT +GR+LYKAPSD
Sbjct: 142 TNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSD 201

Query: 200 GKWGEHELDYLLFVVRNVHVNPNPDEVADIKYVNQEQLKELVRKADAGEGGLKLSPWFRL 259
           GKWGEHELDYLLF+VR+V V PNPDEVA+IKYV++E+LKELV+KADAGE GLKLSPWFRL
Sbjct: 202 GKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRL 261

Query: 260 VVNSFLYKWWDHLQKGTLNEVVDMKTIHKL 285
           VV++FL KWWDH++KGTL E +DMKTIHKL
Sbjct: 262 VVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284

[Close]
BLAST of CmaCh05G007590 vs. TAIR 10
Match: AT5G16440.1 (isopentenyl diphosphate isomerase 1 )

HSP 1 Score: 402.9 bits (1034), Expect = 2.1e-112
Identity = 200/290 (68.97%), Postives = 234/290 (80.69%), Query Frame = 0 

Query: 1   MFLITSHLLKTPLSFPPPISFSSKCRFASSVSPSR--PLFARVSRCYLSTN----TTMDS 60
           +F   S  L++ L      S SS  RFA    P R  P+ +   R  LS       TM  
Sbjct: 6   LFSFPSFHLRSLLPSLSSSSSSSSSRFA----PPRLSPIRSPAPRTQLSVRAFSAVTMTD 65

Query: 61  AADASMDAVQRRLMFDDECILVDESDNIVGHDSKYNCHLMDNIESNKALHRAFSVFLFNN 120
           + DA MDAVQRRLMF+DECILVDE+D +VGHD+KYNCHLM+ IE+   LHRAFSVFLFN+
Sbjct: 66  SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNS 125

Query: 121 KFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIEEDALGVRNAAQRKLFDELGIAAE 180
           K+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEE+ LGVRNAAQRKLFDELGI AE
Sbjct: 126 KYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAE 185

Query: 181 DVPVDQFTSIGRILYKAPSDGKWGEHELDYLLFVVRNVHVNPNPDEVADIKYVNQEQLKE 240
           DVPVD+FT +GR+LYKAPSDGKWGEHE+DYLLF+VR+V + PNPDEVA+IKYV++E+LKE
Sbjct: 186 DVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSREELKE 245

Query: 241 LVRKADAGEGGLKLSPWFRLVVNSFLYKWWDHLQKGTLNEVVDMKTIHKL 285
           LV+KADAG+  +KLSPWFRLVV++FL KWWDH++KGT+ E  DMKTIHKL
Sbjct: 246 LVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 291

The following BLAST results are available for this feature:
BLAST of CmaCh05G007590 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
O489641.3e-11481.90Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata OX=16922 GN=I... [more]
O489653.8e-11469.59Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata OX=16922 GN=... [more]
Q425535.0e-11475.56Isopentenyl-diphosphate Delta-isomerase II, chloroplastic OS=Arabidopsis thalian... [more]
Q394715.0e-11471.13Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri OX=36903 GN=IPI2 P... [more]
Q396649.3e-11372.32Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana OX=3938 GN=IPI2 P... [more]
BLAST of CmaCh05G007590 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G02780.13.5e-11575.56isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 [more]
AT5G16440.12.1e-11268.97isopentenyl diphosphate isomerase 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000086NUDIX hydrolase domainPFAMPF00293NUDIXcoord: 103..241
e-value: 8.4E-21
score: 74.4
IPR000086NUDIX hydrolase domainPROSITEPS51462NUDIXcoord: 102..254
score: 17.676727
IPR011876Isopentenyl-diphosphate delta-isomerase, type 1TIGRFAMTIGR02150TIGR02150coord: 73..255
e-value: 2.7E-58
score: 194.3
IPR011876Isopentenyl-diphosphate delta-isomerase, type 1CDDcd02885IPP_Isomerasecoord: 70..256
e-value: 7.58648E-83
score: 244.396
NoneNo IPR availableGENE3D3.90.79.10Nucleoside Triphosphate Pyrophosphohydrolasecoord: 42..284
e-value: 4.4E-95
score: 319.8
NoneNo IPR availablePIRSRPIRSR017340-1PIRSR017340-1coord: 62..234
e-value: 2.2E-9
score: 35.4
NoneNo IPR availablePANTHERPTHR10885ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASEcoord: 38..284
NoneNo IPR availablePANTHERPTHR10885:SF14ISOPENTENYL-DIPHOSPHATE DELTA-ISOMERASE I-LIKEcoord: 38..284
IPR015797NUDIX hydrolase-like domain superfamilySUPERFAMILY55811Nudixcoord: 72..267

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G007590.1CmaCh05G007590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0050992 dimethylallyl diphosphate biosynthetic process
biological_process GO:0009240 isopentenyl diphosphate biosynthetic process
biological_process GO:0008299 isoprenoid biosynthetic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004452 isopentenyl-diphosphate delta-isomerase activity