CmaCh05G006840 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh05G006840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSyntaxin-6_N domain-containing protein
LocationCma_Chr05: 3564582 .. 3565950 (+)
RNA-Seq ExpressionCmaCh05G006840
SyntenyCmaCh05G006840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCTGTGTGAGCTGTGTGTCCCTTTGTATTCATCTCTGTTCTTGCTTCTCTCAACCACCCATCACAGGAATTGCTCAAACAATCCAACCCTTTAGCTCCCCGCCACCAACATTTGATTTCCCGATTTTGATCTTTGATTTCTTAACCCTTTTCTTTCTTATTTCATCGTCTTTGCTCTGTTTTTCCTACCCCTCCGGTTTGCCCTCTTATCCCTCGATGTTAGTTGCAAATAGTTTCGATTTGTGGAAGAAGGATGGGTTCTTTTCTGCCGCCGAGCAGGTCCAAGAATCTGCCGATACGTACGTTTTTTACTCTCTGTTTGATTTGGGGGTTTTCCCCTTCTTTTTCTTTCTCTCGATGTTTAATTGAATTCTGTTTTGATTTGTTTTGGAGGATGTTTTGTTCTAATGATTTGGTGTTCTGGGTTCGTTTTATTTGAGTCTGGAATGATCTGTTTATGGTGATTCGTTTTAATGTTAGTTTCCTATTCTGTGTCTAAGTTGAATGAGTTTCTACTATAGTGATGGTTCTAGAACCTGAATTTTATCTGCCCTGGATTCTACAAGTTTGTGTGCTTACCTGGGTTTAGAGGGTTCTACAAATTTCTCCTATATTGATACTCATATTGGTTTATGATTTTAGAATGGAGTTTGCATATAGGACATGGGTGAGAGAGATGAGAGAAGGGCTAAGTCCTGATGATTTGGATGAACTTCGACGCGAGGTTCAAACAGCTCTTGGCACAGCCAAATGGCAGGTAGGATACTGAATTTAACGAAATTATGCCATCAAAATATCATAATGGAATGATAATTAGGATACTTAGATGATAAGCCTGATTTTAAGAACAGTGACAACTGACCATTAGTCTTGTTTGCTAGTCAAGCTATGATTATACATTGACTTATATGAACCTATGGCTCTACTTTTATAAAACATAGTAACAAGTGTTGTTTTTTACGGTCTATAATTAGCTGGAAGAGTTTGAGAAAGCTGTTAGAGTTAGCTATCGTGCTCAAAGTGAAGAACATTTGTTGGAAAGACATAGGCTATTTATTGCAGCCATTGGAAACCAAATTTCTCATGTTGAAGCTGCTTTAAGAGAATCTTATGACAAAGAGGGCAAGAAGCCTCTTCGATGGGTGAATTTAAACAAGGAAGAATGCGACGATTTGGCTACGTTTCTCTCTGGCACATGCCAAGTACCACAAAGCGCAAAAACTGAATCATCTGTGTGTTGTTCTTCAGCAAATGGGGAAGAATGCGACGATTTGGCTACATTTAGAAGAGTGGATGATGGACTACGCAAAATGGATAGATCAACAAAGGCAAGGAGAGCGAGCTCGCCAAGCGCTCCTGATCTGTAA

mRNA sequence

ATTTCTGTGTGAGCTGTGTGTCCCTTTGTATTCATCTCTGTTCTTGCTTCTCTCAACCACCCATCACAGGAATTGCTCAAACAATCCAACCCTTTAGCTCCCCGCCACCAACATTTGATTTCCCGATTTTGATCTTTGATTTCTTAACCCTTTTCTTTCTTATTTCATCGTCTTTGCTCTGTTTTTCCTACCCCTCCGGTTTGCCCTCTTATCCCTCGATGTTAGTTGCAAATAGTTTCGATTTGTGGAAGAAGGATGGGTTCTTTTCTGCCGCCGAGCAGGTCCAAGAATCTGCCGATACAATGGAGTTTGCATATAGGACATGGGTGAGAGAGATGAGAGAAGGGCTAAGTCCTGATGATTTGGATGAACTTCGACGCGAGGTTCAAACAGCTCTTGGCACAGCCAAATGGCAGCTGGAAGAGTTTGAGAAAGCTGTTAGAGTTAGCTATCGTGCTCAAAGTGAAGAACATTTGTTGGAAAGACATAGGCTATTTATTGCAGCCATTGGAAACCAAATTTCTCATGTTGAAGCTGCTTTAAGAGAATCTTATGACAAAGAGGGCAAGAAGCCTCTTCGATGGGTGAATTTAAACAAGGAAGAATGCGACGATTTGGCTACGTTTCTCTCTGGCACATGCCAAGTACCACAAAGCGCAAAAACTGAATCATCTGTGTGTTGTTCTTCAGCAAATGGGGAAGAATGCGACGATTTGGCTACATTTAGAAGAGTGGATGATGGACTACGCAAAATGGATAGATCAACAAAGGCAAGGAGAGCGAGCTCGCCAAGCGCTCCTGATCTGTAA

Coding sequence (CDS)

ATGTTAGTTGCAAATAGTTTCGATTTGTGGAAGAAGGATGGGTTCTTTTCTGCCGCCGAGCAGGTCCAAGAATCTGCCGATACAATGGAGTTTGCATATAGGACATGGGTGAGAGAGATGAGAGAAGGGCTAAGTCCTGATGATTTGGATGAACTTCGACGCGAGGTTCAAACAGCTCTTGGCACAGCCAAATGGCAGCTGGAAGAGTTTGAGAAAGCTGTTAGAGTTAGCTATCGTGCTCAAAGTGAAGAACATTTGTTGGAAAGACATAGGCTATTTATTGCAGCCATTGGAAACCAAATTTCTCATGTTGAAGCTGCTTTAAGAGAATCTTATGACAAAGAGGGCAAGAAGCCTCTTCGATGGGTGAATTTAAACAAGGAAGAATGCGACGATTTGGCTACGTTTCTCTCTGGCACATGCCAAGTACCACAAAGCGCAAAAACTGAATCATCTGTGTGTTGTTCTTCAGCAAATGGGGAAGAATGCGACGATTTGGCTACATTTAGAAGAGTGGATGATGGACTACGCAAAATGGATAGATCAACAAAGGCAAGGAGAGCGAGCTCGCCAAGCGCTCCTGATCTGTAA

Protein sequence

MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWVREMREGLSPDDLDELRREVQTALGTAKWQLEEFEKAVRVSYRAQSEEHLLERHRLFIAAIGNQISHVEAALRESYDKEGKKPLRWVNLNKEECDDLATFLSGTCQVPQSAKTESSVCCSSANGEECDDLATFRRVDDGLRKMDRSTKARRASSPSAPDL
Homology
BLAST of CmaCh05G006840 vs. TAIR 10
Match: AT4G30240.1 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-43
Identity = 89/151 (58.94%), Postives = 112/151 (74.17%), Query Frame = 0

Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWVREMREGLSPDDLDELRREVQTAL 60
           M+VANSFDLW+KD FFSAAE+VQESAD ME AYR W +E R+G    + DEL +E+Q AL
Sbjct: 1   MMVANSFDLWQKDVFFSAAEEVQESADIMESAYRLWFKEKRDGRVSVESDELCKELQAAL 60

Query: 61  GTAKWQLEEFEKAVRVSYRAQSEEHLLERHRLFIAAIGNQISHVEAALRESYDKEGKKPL 120
            TAKWQLEEFE+AV +S+    ++  L RH+ F+ AI NQI  VE+ L ES  + GK+PL
Sbjct: 61  STAKWQLEEFERAVSLSHGNCRDDTTLTRHKQFVTAIENQIYQVESTLLESLSENGKQPL 120

Query: 121 RWVNLNKEECDDLATFLSGTCQVPQSAKTES 152
           RWV+LNKEE DDLA FLSG+ Q  +S  ++S
Sbjct: 121 RWVDLNKEERDDLAMFLSGSSQTSESLNSDS 151

BLAST of CmaCh05G006840 vs. TAIR 10
Match: AT2G18860.1 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-42
Identity = 89/154 (57.79%), Postives = 112/154 (72.73%), Query Frame = 0

Query: 1   MLVANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWVREMREGLSPDDLDELRREVQTAL 60
           M+V NSFDLW+KD FFSAAE+VQ+S D ME AYR W+RE +        DE+ +E+Q AL
Sbjct: 1   MMVVNSFDLWQKDVFFSAAEEVQKSTDIMESAYRLWIREKK--------DEICKELQAAL 60

Query: 61  GTAKWQLEEFEKAVRVSY-RAQSEEHLLERHRLFIAAIGNQISHVEAALRESYDKEGKKP 120
           GTAKWQLEEFEKAVR+S+ R    +    RH+ F+ AI NQI  VE +L+E+Y + GKKP
Sbjct: 61  GTAKWQLEEFEKAVRLSHKRCGDNDSSSTRHKQFVTAIENQIHRVETSLQEAYSENGKKP 120

Query: 121 LRWVNLNKEECDDLATFLSGTCQVPQSAKTESSV 154
           LRWV+LN+EE DDLA FLSG+ +  QS   ESS+
Sbjct: 121 LRWVDLNEEERDDLAMFLSGSSRTSQSFSGESSI 146

BLAST of CmaCh05G006840 vs. TAIR 10
Match: AT2G18860.2 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 129.0 bits (323), Expect = 4.1e-30
Identity = 69/126 (54.76%), Postives = 88/126 (69.84%), Query Frame = 0

Query: 29  MEFAYRTWVREMREGLSPDDLDELRREVQTALGTAKWQLEEFEKAVRVSY-RAQSEEHLL 88
           ME AYR W+RE +        DE+ +E+Q ALGTAKWQLEEFEKAVR+S+ R    +   
Sbjct: 10  MESAYRLWIREKK--------DEICKELQAALGTAKWQLEEFEKAVRLSHKRCGDNDSSS 69

Query: 89  ERHRLFIAAIGNQISHVEAALRESYDKEGKKPLRWVNLNKEECDDLATFLSGTCQVPQSA 148
            RH+ F+ AI NQI  VE +L+E+Y + GKKPLRWV+LN+EE DDLA FLSG+ +  QS 
Sbjct: 70  TRHKQFVTAIENQIHRVETSLQEAYSENGKKPLRWVDLNEEERDDLAMFLSGSSRTSQSF 127

Query: 149 KTESSV 154
             ESS+
Sbjct: 130 SGESSI 127

BLAST of CmaCh05G006840 vs. TAIR 10
Match: AT1G27700.1 (Syntaxin/t-SNARE family protein )

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-29
Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = 0

Query: 3   VANSFDLWKKDGFFSAAEQVQESADTMEFAYRTWVREMREGLSPDDLDELRREVQTALGT 62
           +  S D W+KD FF AAE+VQESAD ME AYRTW+   R+     D ++L R++  ALGT
Sbjct: 1   MTTSLDRWEKDPFFPAAEEVQESADRMESAYRTWLNGKRDSSKVWDSEQLHRDLHAALGT 60

Query: 63  AKWQLEEFEKAVRVSYRAQSEEHLLERHRLFIAAIGNQISHVEAALRESYDKEGKKPLRW 122
            KWQL+EF+KAV+ SY  +  +   +RHR F   +  Q+S +E +L+E+   +GK   RW
Sbjct: 61  TKWQLDEFQKAVKSSYDNRLSDETRDRHREFTFVMEAQVSKIEKSLKEAAQSDGKGTPRW 120

Query: 123 VNLNKEECDDLATFLSG 140
           V L++++ ++LA FL+G
Sbjct: 121 VRLDEDDRNELALFLTG 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT4G30240.11.1e-4358.94Syntaxin/t-SNARE family protein [more]
AT2G18860.11.6e-4257.79Syntaxin/t-SNARE family protein [more]
AT2G18860.24.1e-3054.76Syntaxin/t-SNARE family protein [more]
AT1G27700.11.2e-2945.26Syntaxin/t-SNARE family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015260Syntaxin 6, N-terminalPFAMPF09177Syntaxin-6_Ncoord: 13..105
e-value: 6.8E-19
score: 68.3
NoneNo IPR availableGENE3D1.20.58.90coord: 11..112
e-value: 4.0E-15
score: 57.8
NoneNo IPR availablePANTHERPTHR34949OS05G0443700 PROTEINcoord: 1..159
NoneNo IPR availablePANTHERPTHR34949:SF3SYNTAXIN/T-SNARE FAMILY PROTEINcoord: 1..159
IPR010989SNARESUPERFAMILY47661t-snare proteinscoord: 12..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G006840.1CmaCh05G006840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0015031 protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane