CmaCh05G006370 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G006370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	selenoprotein H-like
Location	Cma_Chr05: 3198069 .. 3201399 (-)
RNA-Seq Expression	CmaCh05G006370
Synteny	CmaCh05G006370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGGAGACCGGCGCCATTTCTGGGACTTCGTGCCGCCACTTTCTTCCAGAGAAGAAACCAAGTGGAACTGCGTGGACGTCGTACGACCACCCAGTCGACGGCCACGATCCATTCTCAAAGTGCCAATCCATCTCCACGGTCTCTTCAAAATCCCACCGTCGGTTCCAAAGCGCGGGAAAAAGACCCATAGCCTCTGTGCATCACTGTAAACTAACGGTCACGTACATATCTCTCATTGGAGGTCGATCCGTAAGAAGCCGATAAGGTTACTTTCTTCTCAAAGTAGCTCTGTGTTTTTCTTTCTAGGGTTTCAGGTCTTCTTTCATGGCGCCGAGGAAGCGAAGCAAGAATCAAGAAGACAAGCCGGCGGCGGCGGCGGAGGAGAAGCCGGCCCCGGTGTCGTCGATGGTGACTCGGAGATCGCCCCGGCTGGCGGTGAACTCCATGGCTGATTTGGTGGTGGAAGAGGCTGTGACGGAGTTGCCGAAGAGTAAGAAGGTGAAACGTGCTCCGAAGGAGAATGGGAAGGCGAAGGAGGTTGGAAATGAGGGGGAGGAAATTGATGCTGCTTCGAAGAAACTAAGCAAGGATGCGAAGAACAGAACGGTTGTGATTGAATTTTGGTGAGTTTTTTTTCTTTTTGATTTGATTTGTTGCTCGGAGATCGGTGAGGAACTGAAATTAGGTTAGTTAATTTGAAGATGAAGCGTCGAGGGTTTTGAAATGCTTGATTTATTGATTGCTTTCTGGTTCCATTTTTATCCAAATTCTTAGTTCCATTGGTGAGCTTTTAGGTTAGATTTTCTTCCCTTGAAATGCGGATTTACATTTTTAGGGTTTCGTAGAATGAGGGTTTTGACTTTCATCGCATTATTCTGGTGTTGGTCTACCGCCTGCGCCTCCCATGGCTTCTTCTGCTTCCTTCCTCTACCACTGTTACGTGCGGTGTTTGTCTTATGGCACTTTTCCTTGTTTTGTTGTAGCAAACAGTGCCAATCGTTCAAGAAAAGGGCCATCCAGGTGCAAAGTGGTCTAGAGAATGGTGTTTCTGGAATTACTGTGCTGCTCAATCCTAATAAGGTAACCTTTTGACCAGTTCAACTCTTACATGTTGTTCTTAACAAAAAAAAAAATAATAATAATAAATAAAAAAATAAAAATAAAAAAGGAAGATAATTTGTCTTATTTCTATGCCTGAATATAATCCTTGTATTATTTTTTGCTGAATATAAATGTATTTCTTGACATTGTTATCCTTTTGTTTTCACTGCCTTCCGCTGATTCACGCGTAATTTATCGATAGTTTTTTGTGTCATGAGCAATGGAGGAATTAGAATTCTCTTTGGAAATCAAGGAGTATCTTTTGTTTTGTTGGTTTAGGGTGACGTCAAAGCTAATCTCTATATTACATGGTTAGATTGACGGTATCGAGTATGTGAACAAAAGTAAAAAATACTTAGGAAGCATGAGTTCTGCTATTTGATAATTTTAAAATAAAATCATGAGAGCTTATGCTCAAGGTGGACAATATCCTATCATGGTAGAGTTATGATGAAGTGTTTATTGTCCCTTACCAGTGGTATGAGAGTCATGCCTCTGACTTTGATGTGTTGGTATACCTCAATGACATAGTCATGGTGATCCTCGGTTGAGCTAATCAAAATAGTGAGTGTGCTTTAGTGAAGAGGATGACTATTTGAAGGGAGGCTTGGTCATCCATTGTTCGAGGGGTGCATTGTTGGGAATGCAACCGAAGTTCTAATTCTCCTTTAATATGAAGTCTTTTGAATGATTCAAAAAAACAAAATCATGAGGGCTTATGTCTATGATTTAGGATATTAGAATCCTATGGTTTCAACTATCCGTCTGTATCAACTCGATTGACTCCTAACCGATATAATATATTACTGAGATTCTTGTGCAGAAAACTGTAAAGTCGATAGTGAATATGTTTTGTTCAGTGAAATTGTTGTTTTTCCTCCTCATTTTGTTGTTTATTTTTTAATATGCAGCCAAGAAAGGGTTGCTTTGAAATTCGGAGTGATGATGGCGAGAAGTTTATCAGTCTTCTGGTAATTACTACCTTTAACTTCAATTATAGAAAATTTTCATTTCCAGTTAATTTGACATTTGCTGAATATTCAAGCTCAACGGTTTAGAATCTAATTGCTGATAGGCGAAAATGTCCTTACTCTTTGGTTAAATTGAAAGAAAAAGTGATATGGAATCAACCTAAGGGAAAGTTTTGGAACGGATTACCTTGATGATAAAGATCAAGAGTAAAGGAAACTCGTAATTCGATTCACTTTACAAGAGGTTTGGTCAATACCAAGAGAAAGTTTTGGAACAGATTATCTTGATGATCAAGATCAAGAGTAAAAAAACTCGTTTTTAAATTTGTGATTAGAATCACTCTACAAAGGGTTTGATCAATACCAGTTGAATGACTCTAGCATGCAAGTTCTAAATAGAATAATTTGCAAAGTAAAAGCTTACCTCTCAACAAAGCTAAAATAGAAACTCTATTCTTTTCAATTCCAAAATGTGTTTAAAACTTGCATACTAGAGTCATTCAAGTGATATTGATCAAACCTTTTATGGAGTGATTCGAATCGCGAGTTTAGAAAAAAGTTTTCTTTACTCTTGATCTTGGTCGTCAAGGTAATCCGTTCCAAAACTTTTCCTTAGGTTGATTCCACACCATTTTGTATCAGAGCTTCCCTTGGGTTGATTTCTTATCATTTGGTATTAAAGCTTTCCCTTGAGTTGATTCCTTATCATTTTGTATTTTACATATGTTATTTCTCGGTGAAATATTGATATTGTTTGCTAATAAAAAAACGATCTATACTTGCTCGATTAAACAATTTTCAGAATTTTGTTTGATATTAGATATATATTTTAGTAATATTATCTTCAAACTTTATTAATTTATTTTTTTTAGTGTAATAAAGTGGGAGGATGAATATTTGAACCTCCAACCTCGGAGGAGATGGTAGATGACTTTTAACGGCTCATATTGGCCTGAATTTTGAACTCTTGATCTTTACCATACCATTTTCACAAATGGATGGATATGTGGACGTATAAGGGATTCCTCGACCTTTCGACATCTTTAGATTATGCGTTTGCAATCGGTCAAGCCATCCAATTTTGCCTACTTATTCTGACAAGTCCTCGTTTCAATTATACACTTAGATGATCTAAAGCTGTTCGATAACATCATCCATTTCATTTATAGGATATGAAACGACCATTTACTCGTATGAAGGAGCTGAACATGGAGGAAGTGATTTCAGATATCATTGAGAAGATAAAAGGATGA

mRNA sequence

ATGGTGGTGGAGACCGGCGCCATTTCTGGGACTTCGTGCCGCCACTTTCTTCCAGAGAAGAAACCAAGTGGAACTGCGTGGACGTCGTACGACCACCCAGTCGACGGCCACGATCCATTCTCAAAGTGCCAATCCATCTCCACGGTCTCTTCAAAATCCCACCGTCGGTTCCAAAGCGCGGGAAAAAGACCCATAGCCTCTGTGCATCACTGTAAACTAACGGTCACGTACATATCTCTCATTGGAGGTCGATCCGGTTTCAGGTCTTCTTTCATGGCGCCGAGGAAGCGAAGCAAGAATCAAGAAGACAAGCCGGCGGCGGCGGCGGAGGAGAAGCCGGCCCCGGTGTCGTCGATGGTGACTCGGAGATCGCCCCGGCTGGCGGTGAACTCCATGGCTGATTTGGTGGTGGAAGAGGCTGTGACGGAGTTGCCGAAGAGTAAGAAGGTGAAACGTGCTCCGAAGGAGAATGGGAAGGCGAAGGAGGTTGGAAATGAGGGGGAGGAAATTGATGCTGCTTCGAAGAAACTAAGCAAGGATGCGAAGAACAGAACGGTTGTGATTGAATTTTGCAAACAGTGCCAATCGTTCAAGAAAAGGGCCATCCAGGTGCAAAGTGGTCTAGAGAATGGTGTTTCTGGAATTACTGTGCTGCTCAATCCTAATAAGCCAAGAAAGGGTTGCTTTGAAATTCGGAGTGATGATGGCGAGAAGTTTATCAGTCTTCTGGATATGAAACGACCATTTACTCGTATGAAGGAGCTGAACATGGAGGAAGTGATTTCAGATATCATTGAGAAGATAAAAGGATGA

Coding sequence (CDS)

ATGGTGGTGGAGACCGGCGCCATTTCTGGGACTTCGTGCCGCCACTTTCTTCCAGAGAAGAAACCAAGTGGAACTGCGTGGACGTCGTACGACCACCCAGTCGACGGCCACGATCCATTCTCAAAGTGCCAATCCATCTCCACGGTCTCTTCAAAATCCCACCGTCGGTTCCAAAGCGCGGGAAAAAGACCCATAGCCTCTGTGCATCACTGTAAACTAACGGTCACGTACATATCTCTCATTGGAGGTCGATCCGGTTTCAGGTCTTCTTTCATGGCGCCGAGGAAGCGAAGCAAGAATCAAGAAGACAAGCCGGCGGCGGCGGCGGAGGAGAAGCCGGCCCCGGTGTCGTCGATGGTGACTCGGAGATCGCCCCGGCTGGCGGTGAACTCCATGGCTGATTTGGTGGTGGAAGAGGCTGTGACGGAGTTGCCGAAGAGTAAGAAGGTGAAACGTGCTCCGAAGGAGAATGGGAAGGCGAAGGAGGTTGGAAATGAGGGGGAGGAAATTGATGCTGCTTCGAAGAAACTAAGCAAGGATGCGAAGAACAGAACGGTTGTGATTGAATTTTGCAAACAGTGCCAATCGTTCAAGAAAAGGGCCATCCAGGTGCAAAGTGGTCTAGAGAATGGTGTTTCTGGAATTACTGTGCTGCTCAATCCTAATAAGCCAAGAAAGGGTTGCTTTGAAATTCGGAGTGATGATGGCGAGAAGTTTATCAGTCTTCTGGATATGAAACGACCATTTACTCGTATGAAGGAGCTGAACATGGAGGAAGTGATTTCAGATATCATTGAGAAGATAAAAGGATGA

Protein sequence

MVVETGAISGTSCRHFLPEKKPSGTAWTSYDHPVDGHDPFSKCQSISTVSSKSHRRFQSAGKRPIASVHHCKLTVTYISLIGGRSGFRSSFMAPRKRSKNQEDKPAAAAEEKPAPVSSMVTRRSPRLAVNSMADLVVEEAVTELPKSKKVKRAPKENGKAKEVGNEGEEIDAASKKLSKDAKNRTVVIEFCKQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIKG

Homology

[Close]

BLAST of CmaCh05G006370 vs. ExPASy Swiss-Prot
Match: Q3UQA7 (Selenoprotein H OS=Mus musculus OX=10090 GN=Selenoh PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 6.8e-04
Identity = 28/92 (30.43%), Postives = 47/92 (51.09%), Query Frame = 0


Query: 176 KLSKDAKNRTVVIEFCKQCQSFKKRAIQVQSGLENGVSGITVLLNPNKPRKGCFEI---R 235
           K  K A+  TVVIE C   + + + A  +   L+     + V +NP+KPR+G FE+   R
Sbjct: 20  KREKLAEGATVVIEHCTSXRVYGRHAAALSQALQLEAPELPVQVNPSKPRRGSFEVTLLR 79

Query: 236 SDDGEKFISLLDMKRPFTRMKELNMEEVISDI 265
           SD+    +     K P  ++K    +EV+ ++
Sbjct: 80  SDNSRVELWTGIKKGPPRKLKFPEPQEVVEEL 111

[Close]

BLAST of CmaCh05G006370 vs. TAIR 10
Match: AT2G24440.1 (selenium binding )

HSP 1 Score: 132.9 bits (333), Expect = 3.9e-31
Identity = 83/175 (47.43%), Postives = 107/175 (61.14%), Query Frame = 0


Query: 102 EDKPAAAAEEKPAPVSSMVTRRSPRLAVNSMADLVVEEAVTELPKSKKVKR--APKENGK 161
           E K  A A  +        TR   +   +S   + +E    +  K+ K K   A K+  K
Sbjct: 9   EGKGKAIANTRMLRSMDRKTRSDTKRDGSSSKLMKIESPEKKKRKTTKAKNVGAAKKKVK 68

Query: 162 AKEVG-----NEGEEIDAASKKLSKDAKNRTVVIEFCKQCQSFKKRAIQVQSGLENGVSG 221
            +EV       E E+ DAA K+   D+  + +VIE CKQC+SFK+RA +V+ GLE  V G
Sbjct: 69  KEEVAVKIEKEEEEDDDAAEKEEDDDSDKKKIVIEHCKQCKSFKERANEVKEGLEEAVPG 128

Query: 222 ITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIEKIK 270
           I V +NP+KPR+GCFEIR + GE FISLL MKRPFT MKELNMEEVI+DI+EKIK
Sbjct: 129 IIVTVNPDKPRRGCFEIREEGGETFISLLAMKRPFTPMKELNMEEVIADIVEKIK 183

[Close]

BLAST of CmaCh05G006370 vs. TAIR 10
Match: AT4G31360.1 (selenium binding )

HSP 1 Score: 122.9 bits (307), Expect = 4.0e-28
Identity = 79/183 (43.17%), Postives = 107/183 (58.47%), Query Frame = 0


Query: 104 KPAAAAEEKPAPVSSMVTRRSPRLAVNSMADLVVEEAV-----TELPKSKKVKR--APKE 163
           K  A  EEK  P++++ + R  R   +       +           P +KK KR  +  E
Sbjct: 5   KSKADGEEKAKPLTTLASSRVTRSMDSRTRSQTQQNGAKAAGSATKPATKKAKRKNSAIE 64

Query: 164 NGKAKEVGNEGEEI----DAASKKLSK------DAKNRTVVIEFCKQCQSFKKRAIQVQS 223
            G+AK+ G + EE+    +A  +++ K      D     +VIE CKQC +FK RAIQV+ 
Sbjct: 65  TGRAKK-GKKEEEVEEPEEAVEEEVEKEEPEVEDPTRTKIVIEHCKQCNAFKTRAIQVKE 124

Query: 224 GLENGVSGITVLLNPNKPRKGCFEIRSDDGEKFISLLDMKRPFTRMKELNMEEVISDIIE 270
            LE  V G+TV LNP KPR+GCFEIR + G+ FISLL+MKRPF  MK L+MEEVI DII+
Sbjct: 125 ALEGAVPGVTVSLNPEKPRRGCFEIREEGGQTFISLLEMKRPFAPMKALDMEEVIEDIIK 184

The following BLAST results are available for this feature:

BLAST of CmaCh05G006370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3UQA7	6.8e-04	30.43	Selenoprotein H OS=Mus musculus OX=10090 GN=Selenoh PE=1 SV=2	[more]

BLAST of CmaCh05G006370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24440.1	3.9e-31	47.43	selenium binding	[more]
AT4G31360.1	4.0e-28	43.17	selenium binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 181..256 e-value: 9.5E-6 score: 27.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..171
None	No IPR available	PANTHER	PTHR33638	SELENOPROTEIN H	coord: 92..269

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G006370.1	CmaCh05G006370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005794	Golgi apparatus