CmaCh05G005780 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh05G005780
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	early nodulin-93-like
Location	Cma_Chr05: 2871232 .. 2873567 (+)
RNA-Seq Expression	CmaCh05G005780
Synteny	CmaCh05G005780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAGGCGGCGCCGATGATTAGGAGACGAAACCAAATTTGATTGGATGTCTTCCAATTTAAAAAATGAAAAGAGAGCAAATAAATTAACCATGTTCTTTGGACAGAATAGATCTATTCAACTGCGCTGAATTTTGCGAATCGGTCTCCGACGACGATAATGGGAATTCCATCGGATTTGAGGGATCTATGGGTGGAAAGAAGGAATGCTCTTGTAATTCCATCGCCGGCTGAAGAACGGAAAATATCGAACGCGAAGCTTTGTACTCAAGGTCTGTTACTGCGCTCTCGATTCCTTGATCCTTCGTTTCTTTGATTTCACGTCCTTCAAGCTTTGTGGAGTTGGTTGAAATTTAGAATTCTTATTAAAAACAACGGAATCTCGATGTTAACGCAATGGATTCGATCTTCTTCAGCTGCTGTACTAATTGTCACTGGATAATTTGTAGGGAAAATGTGAAAATATCTGACTCCATGTTTTGTTTCATTATGATGAGAATTGTTGGTGAAATTTCTAATCTGTTTATTGCTGAGCATTCATTCCCATGATCGCTTCTCTCACTTCTTTCTTTTTTTGGAGCTGGAGATGCAAGTGCGATCAATGTTTTTTTTTCTTTTAAGTCAATGCTTTTAGATTTTGCTTATTTACAAGTTTTATTTGATTATTAATCGCATCATCTCTTGTTCATAACATTAGTTAGCCTTTGTATACTTTTCAGAAGGTGTTCGTGCTGGTTTCAAGAATGCTTCTATTGCATGTGTGGCCAGTGCAGTGCCTACGGTATTCGTTCTGACATAATAAGCTTTGAGTTTAATCTGTTTTGATGTCTGTTTATTCTGTATTTGTAGTTTAAAGTAGCATGAATTTGACCATATTAGTATGTTGCCCATTAACAAAAGGCATAAAGCTCATTAATAGCGTAAAGCTTTCTTCCAATTACTTTGTGTTGGTTTGAGTAATGTCTTCGCAGTATAGGCACTCTATTTTGGCCCATTCCATGTAATTACTTGCCTGCACTTGTTTTATAGATACATATATTTCGTCTTCTCCCAAATCGGTCAGTCTAAACTGCCAGTGCAGATAATCGAACATGTTAATGGTTACCGGACAAAAGGTTGAAAGGATTTAAGAGTAGACTATCTGATTCTTTCATCATGTTTGTGAAAGAAAGGACATAGACAGAAGTAGAATATGATTGTTGATCTCCATATGGTAGATTTAGTAAGAAAAACGCTATTATTTCGGTGCTGGTGGGTTGAAGAAAATTATTTGGTTTTATTTCTTTAAGGATATCTTCTTTGGAAATCACATTTAGAGTTTGCTGGGGATTGATTCTTTTGTAATAAAAGCTTTCCCCCATTGTTTATTTGAACAGGCAAACTATTTGCTACATAAAATGCAGAGTATCAATACCACCTTATTAGTCCCTTGTGCTATTTTGTGGTAGTGGTAATGCCTAAGACATTGCAGAATTTAAATAGGAGAAAAATTTGTAAAATCACCTTTTTGTGGTCAATGAGGTCCTAAGTGTTTTAAGAGAAATCTTTTAGGAAGTGAAGATTTAGACTGAATTTTGATAAGAGAAATCTCTTCTTCATTTTCGGGCATTAAAGAGGAATAGTTATAAAAAACTATATTAAAGGAAACAAAACTTCTTCGATGAGGTTTGTTGAAAGGTGAAATTCCCCCAATATAAAAAATTGAAGACTAGTCTTGGTTAACAAGCTTTAATCAGTCTGATACCAACTGCAACAAAGATCCCATATTGACAACCATTTGAAGTAATGTGTGGGGCATTTCCTGAGCAAGTCTTAGCTAAATTGAGACTTATTCTCACAGCATTTGGGATGTGTGTGTGTCTTTGTGTGTGTGAATTTATGTTTATAGTTTAATATTACTTCTTCTCCTCCATCCTCAGTTGGTTGCTGTTCGAGTAGTTCCTTGGGCCAAAGCAAACCTTAATTATACTGCTCAGGCACTCATCATTTCTGCAGGTATAGTGCTTATGTACAAACTTGTGATTAACCAATTGTCATCATCTATTTCAAACCCAGAAAAGCCTAAAGAGTTAAATCTGTGAACTCCTAGTAAGTATGAGCCCATTCCATTTTTCTGCCCCCTAGGAAAGTAAAAGAAAATGCTAAAAACTATTATGGAAGCATCTTTAGAAAGGGGTCGAATTAACTTGGTATTACTTATTGTAGGAATTAACATTTTACTTTTAATTTGTGAACAGCGTCTATTGCTGCGTACTTCATCACTGCTGATAAAACCATCTTAGAATGTGCAAGAAGAAACTCTCAGTTAGAGCATGCCTTGAGGCGCCAAGGATCATGA

mRNA sequence

AACAGGCGGCGCCGATGATTAGGAGACGAAACCAAATTTGATTGGATGTCTTCCAATTTAAAAAATGAAAAGAGAGCAAATAAATTAACCATGTTCTTTGGACAGAATAGATCTATTCAACTGCGCTGAATTTTGCGAATCGGTCTCCGACGACGATAATGGGAATTCCATCGGATTTGAGGGATCTATGGGTGGAAAGAAGGAATGCTCTTGTAATTCCATCGCCGGCTGAAGAACGGAAAATATCGAACGCGAAGCTTTGTACTCAAGAAGGTGTTCGTGCTGGTTTCAAGAATGCTTCTATTGCATGTGTGGCCAGTGCAGTGCCTACGTTGGTTGCTGTTCGAGTAGTTCCTTGGGCCAAAGCAAACCTTAATTATACTGCTCAGGCACTCATCATTTCTGCAGCGTCTATTGCTGCGTACTTCATCACTGCTGATAAAACCATCTTAGAATGTGCAAGAAGAAACTCTCAGTTAGAGCATGCCTTGAGGCGCCAAGGATCATGA

Coding sequence (CDS)

ATGGGAATTCCATCGGATTTGAGGGATCTATGGGTGGAAAGAAGGAATGCTCTTGTAATTCCATCGCCGGCTGAAGAACGGAAAATATCGAACGCGAAGCTTTGTACTCAAGAAGGTGTTCGTGCTGGTTTCAAGAATGCTTCTATTGCATGTGTGGCCAGTGCAGTGCCTACGTTGGTTGCTGTTCGAGTAGTTCCTTGGGCCAAAGCAAACCTTAATTATACTGCTCAGGCACTCATCATTTCTGCAGCGTCTATTGCTGCGTACTTCATCACTGCTGATAAAACCATCTTAGAATGTGCAAGAAGAAACTCTCAGTTAGAGCATGCCTTGAGGCGCCAAGGATCATGA

Protein sequence

MGIPSDLRDLWVERRNALVIPSPAEERKISNAKLCTQEGVRAGFKNASIACVASAVPTLVAVRVVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEHALRRQGS

Homology

[Close]

BLAST of CmaCh05G005780 vs. ExPASy Swiss-Prot
Match: Q02921 (Early nodulin-93 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-20
Identity = 51/80 (63.75%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 26  ERKISNAKLCTQEGVRAGFKNASIACVASAVPTLVAVRVVPWAKANLNYTAQALIISAAS 85
           ++K++ AK C+ EGV AG K A +A VASA+PTL +VR++PWA+ANLN+TAQALIIS A+
Sbjct: 17  DQKLAFAKRCSHEGVLAGAKAAVVASVASAIPTLASVRMLPWARANLNHTAQALIISTAT 76

Query: 86  IAAYFITADKTILECARRNS 106
            AAYFI ADKT+L  AR+NS
Sbjct: 77  AAAYFIVADKTVLATARKNS 96

[Close]

BLAST of CmaCh05G005780 vs. TAIR 10
Match: AT5G25940.1 (early nodulin-related )

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-24
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 0


Query: 14  RRNALVIPSPAEERKISNAKLCTQEGVRAGFKNASIACVASAVPTLVAVRVVPWAKANLN 73
           ++N  VI SP E  KI  A+   Q G  AG K A++A VASA+PT+ AVR+ PWAKANLN
Sbjct: 12  QQNLFVIASPDEIAKIHRAETSKQAGAIAGAKAAAVAAVASAIPTVAAVRMFPWAKANLN 71

Query: 74  YTAQALIISAASIAAYFITADKTILECARRNSQLE 109
           YTAQALIIS+ASIAA+FITADKTIL+ ARRN++ +
Sbjct: 72  YTAQALIISSASIAAFFITADKTILQGARRNTEAQ 106

The following BLAST results are available for this feature:

BLAST of CmaCh05G005780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q02921	3.8e-20	63.75	Early nodulin-93 OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of CmaCh05G005780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25940.1	1.5e-24	63.16	early nodulin-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005050	Early nodulin 93 ENOD93 protein	PFAM	PF03386	ENOD93	coord: 28..105 e-value: 4.6E-40 score: 135.4
IPR005050	Early nodulin 93 ENOD93 protein	PANTHER	PTHR33605	EARLY NODULIN-93	coord: 1..108
None	No IPR available	PANTHER	PTHR33605:SF3	EARLY NODULIN-LIKE PROTEIN	coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G005780.1	CmaCh05G005780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane